| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dyella japonica UNC79MFTsu3.2 | 1.0 | ABZR86_RS07060 | | ABC transporter transmembrane domain-containing protein | 1.0 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.41 | 16 |
| Rhodanobacter denitrificans FW104-10B01 | 0.83 | LRK54_RS17125 | | ABC transporter transmembrane domain-containing protein | 0.81 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.80 | OKGIIK_07760 | mdlB | ABC transporter | 0.82 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.79 | LRK55_RS16835 | | ABC transporter transmembrane domain-containing protein | 0.82 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 63 |
| Lysobacter sp. OAE881 | 0.58 | ABIE51_RS13785 | | ABC transporter transmembrane domain-containing protein | 0.60 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.57 | Xcc-8004.3417.1 | | ABC-type multidrug transport system, ATPase and permease components | 0.61 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 74 |
| Caulobacter crescentus NA1000 Δfur | 0.51 | CCNA_03383 | | multidrug/protein/lipid ABC transporter family, ATP-binding and permease protein | 0.14 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | low | > 67 |
| Caulobacter crescentus NA1000 | 0.51 | CCNA_03383 | | multidrug/protein/lipid ABC transporter family, ATP-binding and permease protein | 0.14 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | low | > 66 |
| Herbaspirillum seropedicae SmR1 | 0.50 | HSERO_RS17210 | | ABC transporter | 0.40 | HSERO_RS14825 | | 23S rRNA methyltransferase | low | > 78 |
| Agrobacterium fabrum C58 | 0.50 | Atu3744 | | ABC transporter permease | 0.14 | Atu0735 | | RNA methyltransferase | low | > 89 |
| Paraburkholderia sabiae LMG 24235 | 0.50 | QEN71_RS20770 | | ABC transporter transmembrane domain-containing protein | 0.40 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 153 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.50 | A4249_RS08845 | | ABC transporter transmembrane domain-containing protein | 0.12 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | low | > 48 |
| Rhodopseudomonas palustris CGA009 | 0.49 | TX73_004740 | | ABC transporter transmembrane domain-containing protein | 0.14 | TX73_004885 | | methyltransferase | — | — |
| Burkholderia phytofirmans PsJN | 0.48 | BPHYT_RS20895 | | ABC transporter | 0.39 | BPHYT_RS09125 | | 23S rRNA methyltransferase | low | > 109 |
| Azospirillum sp. SherDot2 | 0.48 | MPMX19_01923 | | Putative multidrug export ATP-binding/permease protein | 0.14 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.48 | PGA1_c22190 | | lipid A export ATP-binding/permease protein MsbA | 0.13 | PGA1_c34810 | | putative RNA methyltransferase | — | — |
| Variovorax sp. SCN45 | 0.47 | GFF4767 | | Efflux ABC transporter, permease/ATP-binding protein | 0.38 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.47 | GFF3699 | | ABC transporter ATP-binding protein | 0.37 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 90 |
| Sinorhizobium meliloti 1021 | 0.46 | SMc03991 | | ABC transporter ATP-binding protein | 0.15 | SMc00974 | | RNA methyltransferase | — | — |
| Acidovorax sp. GW101-3H11 | 0.46 | Ac3H11_1436 | | ABC transporter, ATP binding/permease protein | 0.38 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 79 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.45 | Psyr_1830 | | ABC transporter, transmembrane region:ABC transporter | 0.34 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.31 | 69 |
| Pseudomonas syringae pv. syringae B728a | 0.45 | Psyr_1830 | | ABC transporter, transmembrane region:ABC transporter | 0.34 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 86 |
| Dinoroseobacter shibae DFL-12 | 0.44 | Dshi_0852 | | lipid A ABC exporter family, fused ATPase and inner membrane subunits (RefSeq) | 0.14 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | low | > 64 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_3232 | | lipid ABC transporter ATPase/inner membrane protein (RefSeq) | 0.34 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 73 |
| Sphingomonas koreensis DSMZ 15582 | 0.44 | Ga0059261_3276 | | ABC-type multidrug transport system, ATPase and permease components | 0.12 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | low | > 68 |
| Shewanella oneidensis MR-1 | 0.44 | SO3665 | | ABC transporter, ATP-binding/permease protein, putative (NCBI ptt file) | 0.33 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens SBW25-INTG | 0.44 | PFLU_RS07625 | | ABC transporter ATP-binding protein/permease | 0.37 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 109 |
| Pseudomonas simiae WCS417 | 0.44 | PS417_07545 | | ABC transporter ATP-binding protein | 0.36 | PS417_20155 | | 23S rRNA methyltransferase | 0.14 | 60 |
| Pseudomonas fluorescens SBW25 | 0.44 | PFLU_RS07625 | | ABC transporter ATP-binding protein/permease | 0.37 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_2295 | | Lipid A export ATP-binding/permease protein MsbA | 0.35 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 103 |
| Shewanella loihica PV-4 | 0.43 | Shew_3087 | | lipid ABC transporter ATPase/inner membrane protein (RefSeq) | 0.33 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 60 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_01105 | | Lipid A export ATP-binding/permease protein MsbA | 0.35 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_4046 | | Lipid A export ATP-binding/permease protein MsbA | 0.33 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_3896 | | Lipid A export ATP-binding/permease protein MsbA | 0.35 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_02355 | | ABC transporter ATP-binding protein | 0.35 | AO356_19055 | | 23S rRNA methyltransferase | low | > 104 |
| Pseudomonas sp. S08-1 | 0.42 | OH686_02040 | | Efflux ABC transporter, permease/ATP-binding protein | 0.37 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 80 |
| Pseudomonas putida KT2440 | 0.42 | PP_2119 | | putative ABC efflux transporter, permease/ATP-binding protein | 0.32 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.12 | 79 |
| Shewanella amazonensis SB2B | 0.41 | Sama_2908 | | ABC transporter, ATP-binding/permease protein, putative (RefSeq) | 0.30 | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 62 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_3709 | | lipid A ABC transporter ATPase/inner membrane protein | 0.47 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | low | > 73 |
| Pseudomonas fluorescens FW300-N2E3 | 0.40 | AO353_00535 | | ABC transporter ATP-binding protein | 0.34 | AO353_02715 | | 23S rRNA methyltransferase | low | > 101 |
| Alteromonas macleodii MIT1002 | 0.40 | MIT1002_01305 | | Putative multidrug export ATP-binding/permease protein | 0.25 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 70 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.39 | CA264_12740 | | multidrug ABC transporter ATP-binding protein | 0.18 | CA264_02005 | | 23S rRNA (uracil-5-)-methyltransferase RumA | — | — |
| Bosea sp. OAE506 | 0.38 | ABIE41_RS09345 | | ABC transporter transmembrane domain-containing protein | 0.14 | ABIE41_RS22255 | | RNA methyltransferase | low | > 77 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.37 | Echvi_1191 | | ABC-type multidrug transport system, ATPase and permease components | 0.18 | Echvi_0172 | | 23S rRNA (uracil-5-)-methyltransferase RumA | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_0367 | | ABC transporter related (RefSeq) | 0.18 | DvMF_1383 | | RNA methyltransferase, TrmA family (RefSeq) | — | — |
| Synechococcus elongatus PCC 7942 | 0.30 | Synpcc7942_0082 | mdlB | ATPase | 0.20 | Synpcc7942_0241 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA | — | — |
| Azospirillum brasilense Sp245 | 0.29 | AZOBR_RS21870 | | ABC transporter permease | 0.14 | AZOBR_RS01195 | | RNA methyltransferase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.29 | DVU1671 | msbA | ABC transporter, ATP-binding protein/permease protein (TIGR) | 0.17 | DVU0924 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.27 | BACOVA_01923 | | ABC transporter, ATP-binding protein | 0.18 | BACOVA_02267 | | 23S rRNA (uracil-5-)-methyltransferase RumA | — | — |
| Rhizobium sp. OAE497 | 0.27 | ABIE40_RS00590 | | ABC transporter ATP-binding protein | 0.14 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.27 | CA265_RS13260 | | ABC transporter | 0.15 | CA265_RS25340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.36 | 16 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.27 | BT3386 | | ABC transporter, ATP-binding protein (NCBI ptt file) | 0.16 | BT0643 | | RNA methyltransferase (NCBI ptt file) | — | — |
| Bacteroides stercoris CC31F | 0.26 | HMPREF1181_RS02515 | | ABC transporter ATP-binding protein | 0.17 | HMPREF1181_RS16525 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Castellaniella sp019104865 MT123 | 0.26 | ABCV34_RS13160 | | ABC transporter ATP-binding protein | 0.41 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 48 |
| Fusobacterium nucleatum SB010 | 0.25 | HUW76_07145 | | ABC transporter ATP-binding protein | 0.13 | HUW76_01255 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
Not shown: 4 genomes with orthologs for ABZR86_RS07060 only; 41 genomes with orthologs for ABZR86_RS07120 only