Conservation of cofitness between A4249_RS08425 and A4249_RS15570 in Brevundimonas sp. GW460-12-10-14-LB2

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Brevundimonas sp. GW460-12-10-14-LB2 1.0 A4249_RS08425 class I SAM-dependent RNA methyltransferase 1.0 A4249_RS15570 chemotaxis protein CheW 0.56 10
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.66 CCNA_00443 chemotaxis protein cheW low > 67
Caulobacter crescentus NA1000 0.57 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.66 CCNA_00443 chemotaxis protein cheW low > 66
Bosea sp. OAE506 0.38 ABIE41_RS22255 RNA methyltransferase 0.37 ABIE41_RS12290 chemotaxis protein CheW — —
Agrobacterium fabrum C58 0.36 Atu0735 RNA methyltransferase 0.49 Atu2075 chemotaxis protein low > 89
Rhodopseudomonas palustris CGA009 0.36 TX73_004885 methyltransferase 0.22 TX73_000720 chemotaxis protein CheW low > 86
Rhizobium sp. OAE497 0.36 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.66 ABIE40_RS02880 chemotaxis protein CheW low > 107
Phaeobacter inhibens DSM 17395 0.34 PGA1_c34810 putative RNA methyltransferase 0.41 PGA1_262p02110 putative chemotaxis protein CheW low > 62
Sinorhizobium meliloti 1021 0.32 SMc00974 RNA methyltransferase 0.67 SMc03008 chemotaxis protein low > 103
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.34 Ga0059261_1119 Chemotaxis signal transduction protein low > 68
Magnetospirillum magneticum AMB-1 0.26 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.21 AMB_RS01645 chemotaxis protein CheW low > 64
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.33 CSW01_19540 chemotaxis protein CheW low > 62
Erwinia tracheiphila SCR3 0.17 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 LU632_RS13555 cheW chemotaxis protein CheW low > 74
Pectobacterium carotovorum WPP14 0.17 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 HER17_RS08105 chemotaxis protein CheW low > 75
Pantoea sp. MT58 0.17 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 IAI47_08305 chemotaxis protein CheW low > 76
Serratia liquefaciens MT49 0.17 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 IAI46_16035 chemotaxis protein CheW low > 86
Escherichia coli ECOR38 0.16 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 HEPCGN_04545 cheW chemotaxis protein CheW low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.34 GFF1668 Positive regulator of CheA protein activity (CheW) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 OHPLBJKB_01841 Chemotaxis protein CheW low > 73
Shewanella sp. ANA-3 0.16 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.35 Shewana3_2217 CheW protein (RefSeq) low > 73
Escherichia coli BW25113 0.16 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.34 b1887 cheW purine-binding chemotaxis protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.16 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 ECOLIN_RS10775 chemotaxis protein CheW low > 55
Escherichia coli BL21 0.16 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.34 ECD_01858 purine-binding chemotaxis protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.34 Psyr_3428 CheW-like protein low > 86
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.34 Psyr_3428 CheW-like protein low > 86
Escherichia fergusonii Becca 0.16 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 EFB2_02056 Chemotaxis protein CheW low > 86
Enterobacter asburiae PDN3 0.16 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.34 EX28DRAFT_0663 Chemotaxis signal transduction protein low > 76
Shewanella amazonensis SB2B 0.16 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.38 Sama_3496 biotin synthase (RefSeq) low > 62
Escherichia coli ECRC101 0.16 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 MCAODC_19280 cheW chemotaxis protein CheW low > 87
Escherichia coli ECOR27 0.16 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 NOLOHH_16565 cheW chemotaxis protein CheW low > 75
Escherichia coli ECRC99 0.16 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 KEDOAH_01980 cheW chemotaxis protein CheW — —
Dickeya dadantii 3937 0.16 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 DDA3937_RS13540 chemotaxis protein CheW low > 74
Escherichia coli ECRC98 0.16 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 JDDGAC_00700 cheW chemotaxis protein CheW low > 86
Escherichia coli ECRC62 0.16 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 BNILDI_15355 cheW chemotaxis protein CheW low > 75
Escherichia coli ECRC100 0.16 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 OKFHMN_26125 cheW chemotaxis protein CheW low > 80
Escherichia coli ECRC102 0.16 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 NIAGMN_01935 cheW chemotaxis protein CheW — —
Pseudomonas stutzeri RCH2 0.15 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.33 Psest_1749 Chemotaxis signal transduction protein low > 67
Enterobacter sp. TBS_079 0.15 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 MPMX20_02797 Chemotaxis protein CheW low > 85
Rahnella sp. WP5 0.15 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 EX31_RS11400 chemotaxis protein CheW low > 89
Marinobacter adhaerens HP15 0.15 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.33 HP15_2292 purine-binding chemotaxis protein CheW low > 73
Dickeya dianthicola ME23 0.15 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 DZA65_RS14070 chemotaxis protein CheW 0.47 35
Rhodanobacter sp. FW510-T8 0.14 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 OKGIIK_02895 Chemotaxis protein CheW low > 52
Shewanella loihica PV-4 0.14 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.39 Shew_0112 CheW protein (RefSeq) low > 60
Pseudomonas sp. S08-1 0.14 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.32 OH686_02685 Positive regulator of CheA protein activity (CheW) low > 80
Dechlorosoma suillum PS 0.14 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.35 Dsui_1709 chemotaxis signal transduction protein low > 51
Xanthomonas campestris pv. campestris strain 8004 0.14 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.37 Xcc-8004.2882.1 Positive regulator of CheA protein activity (CheW) low > 74
Castellaniella sp019104865 MT123 0.14 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 ABCV34_RS05830 chemotaxis protein CheW low > 48
Dickeya dianthicola 67-19 0.14 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 HGI48_RS13585 chemotaxis protein CheW low > 71
Hydrogenophaga sp. GW460-11-11-14-LB1 0.14 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.36 GFF2450 Positive regulator of CheA protein activity (CheW) low > 90
Pseudomonas putida KT2440 0.14 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 PP_4332 Chemotaxis protein CheW low > 96
Ralstonia solanacearum IBSBF1503 0.14 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 RALBFv3_RS17395 chemotaxis protein CheW low > 76
Ralstonia solanacearum UW163 0.14 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 UW163_RS21755 chemotaxis protein CheW — —
Ralstonia sp. UNC404CL21Col 0.14 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 ABZR87_RS17965 chemotaxis protein CheW low > 80
Alteromonas macleodii MIT1002 0.13 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 MIT1002_01110 Chemotaxis protein CheW low > 70
Ralstonia solanacearum GMI1000 0.13 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 RS_RS23915 chemotaxis protein CheW low > 80
Ralstonia solanacearum PSI07 0.13 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 RPSI07_RS06250 chemotaxis protein CheW low > 81
Pseudomonas fluorescens SBW25 0.13 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 PFLU_RS21615 chemotaxis protein CheW low > 109
Pseudomonas fluorescens SBW25-INTG 0.13 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 PFLU_RS21615 chemotaxis protein CheW low > 109
Pseudomonas fluorescens FW300-N1B4 0.13 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.32 Pf1N1B4_3635 Positive regulator of CheA protein activity (CheW) — —
Pseudomonas fluorescens FW300-N2E2 0.13 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.32 Pf6N2E2_2564 Positive regulator of CheA protein activity (CheW) low > 103
Acidovorax sp. GW101-3H11 0.13 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.36 Ac3H11_1422 Positive regulator of CheA protein activity (CheW) low > 79
Pseudomonas fluorescens FW300-N2C3 0.13 AO356_19055 23S rRNA methyltransferase 0.32 AO356_03685 chemotaxis protein CheW low > 104
Herbaspirillum seropedicae SmR1 0.13 HSERO_RS14825 23S rRNA methyltransferase 0.37 HSERO_RS14950 purine-binding chemotaxis protein low > 78
Pseudomonas simiae WCS417 0.13 PS417_20155 23S rRNA methyltransferase 0.32 PS417_19650 chemotaxis protein CheW low > 88
Lysobacter sp. OAE881 0.12 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.33 ABIE51_RS16920 chemotaxis protein CheW low > 62
Pseudomonas sp. RS175 0.12 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 PFR28_00861 Chemotaxis protein CheW low > 88
Cupriavidus basilensis FW507-4G11 0.12 RR42_RS13170 23S rRNA methyltransferase 0.38 RR42_RS35800 chemotaxis protein CheW 0.47 52
Pseudomonas fluorescens GW456-L13 0.12 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.32 PfGW456L13_4321 Positive regulator of CheA protein activity (CheW) low > 87
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_02715 23S rRNA methyltransferase 0.32 AO353_18830 chemotaxis protein CheW low > 101
Variovorax sp. SCN45 0.12 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.37 GFF5724 Positive regulator of CheA protein activity (CheW) — —
Desulfovibrio vulgaris Hildenborough JW710 0.11 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) 0.32 DVU1904 cheW-2 chemotaxis protein CheW (TIGR) low > 55

Not shown: 17 genomes with orthologs for A4249_RS08425 only; 3 genomes with orthologs for A4249_RS15570 only