Conservation of cofitness between A4249_RS11465 and A4249_RS14825 in Brevundimonas sp. GW460-12-10-14-LB2

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Brevundimonas sp. GW460-12-10-14-LB2 1.0 A4249_RS11465 Cys-tRNA(Pro) deacylase 1.0 A4249_RS14825 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 9
Agrobacterium fabrum C58 0.66 Atu0275 hypothetical protein 0.44 Atu2776 hypothetical protein — —
Rhizobium sp. OAE497 0.64 ABIE40_RS01230 Cys-tRNA(Pro) deacylase 0.41 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 107
Caulobacter crescentus NA1000 Δfur 0.62 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.70 CCNA_03546 rRNA large subunit methyltransferase low > 67
Caulobacter crescentus NA1000 0.62 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.70 CCNA_03546 rRNA large subunit methyltransferase low > 66
Sinorhizobium meliloti 1021 0.62 SMc00385 hypothetical protein 0.41 SMc03781 rRNA large subunit methyltransferase low > 103
Rhodospirillum rubrum S1H 0.61 Rru_A3668 hypothetical protein (NCBI) 0.35 Rru_A1235 Protein of unknown function DUF163 (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.57 AMB_RS00065 Cys-tRNA(Pro) deacylase 0.38 AMB_RS20655 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 64
Rhodopseudomonas palustris CGA009 0.52 TX73_022270 Cys-tRNA(Pro) deacylase 0.39 TX73_000870 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 86
Pantoea sp. MT58 0.41 IAI47_14410 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.22 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 76
Pectobacterium carotovorum WPP14 0.40 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.25 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 75
Acinetobacter radioresistens SK82 0.39 MPMX26_01615 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H — —
Azospirillum sp. SherDot2 0.38 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.39 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H low > 112
Rahnella sp. WP5 0.38 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.24 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 89
Azospirillum brasilense Sp245 0.38 AZOBR_RS00470 hypothetical protein 0.41 AZOBR_RS04060 50S rRNA methyltransferase low > 97
Serratia liquefaciens MT49 0.37 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.24 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase 0.25 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH — —
Shewanella amazonensis SB2B 0.37 Sama_0531 YbaK/EbsC protein (RefSeq) 0.23 Sama_2587 rRNA large subunit methyltransferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.37 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) 0.23 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.37 Shewana3_0957 ybaK/ebsC protein (RefSeq) 0.23 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) low > 73
Klebsiella michiganensis M5al 0.37 BWI76_RS06870 aminoacyl-tRNA deacylase 0.24 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 92
Escherichia coli Nissle 1917 0.36 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECRC102 0.36 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECRC98 0.36 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia fergusonii Becca 0.36 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 EFB2_03456 Ribosomal RNA large subunit methyltransferase H low > 86
Escherichia coli ECRC99 0.36 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECRC100 0.36 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 80
Escherichia coli ECRC101 0.36 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 87
Enterobacter sp. TBS_079 0.36 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.25 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H — —
Escherichia coli BL21 0.36 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase 0.23 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent — —
Escherichia coli ECOR27 0.36 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 75
Escherichia coli ECOR38 0.36 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 87
Escherichia coli BW25113 0.36 b0481 ybaK hypothetical protein (NCBI) 0.23 b0636 ybeA hypothetical protein (NCBI) low > 76
Escherichia coli ECRC62 0.36 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_3903 Conserved hypothetical protein 11 0.22 Psyr_4366 Protein of unknown function DUF163 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_3903 Conserved hypothetical protein 11 0.22 Psyr_4366 Protein of unknown function DUF163 low > 86
Marinobacter adhaerens HP15 0.36 HP15_3802 conserved hypothetical protein CHP00011 0.25 HP15_604 conserved hypothetical protein CHP00246 low > 73
Castellaniella sp019104865 MT123 0.35 ABCV34_RS00510 aminoacyl-tRNA deacylase 0.27 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 48
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF4401 Cys-tRNA(Pro) deacylase YbaK 0.24 GFF4549 LSU m3Psi1915 methyltransferase RlmH low > 78
Pseudomonas sp. S08-1 0.35 OH686_20370 Cys-tRNA(Pro) deacylase YbaK 0.21 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH low > 80
Dickeya dadantii 3937 0.35 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.25 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Bifidobacterium breve UCC2003 0.34 BBR_RS16795 Cys-tRNA(Pro) deacylase 0.27 BBR_RS19685 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 34
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS04270 membrane protein 0.29 HSERO_RS17780 50S rRNA methyltransferase low > 78
Ralstonia solanacearum PSI07 0.34 RPSI07_RS12155 Cys-tRNA(Pro) deacylase 0.24 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 81
Ralstonia solanacearum GMI1000 0.34 RS_RS12760 Cys-tRNA(Pro) deacylase 0.24 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS00800 Cys-tRNA(Pro) deacylase 0.26 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 80
Erwinia tracheiphila SCR3 0.33 LU632_RS15310 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.24 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 74
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS03340 membrane protein 0.24 RR42_RS04710 50S rRNA methyltransferase low > 128
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04124 Cys-tRNA(Pro) deacylase 0.28 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase low > 103
Ralstonia solanacearum UW163 0.33 UW163_RS08480 Cys-tRNA(Pro) deacylase 0.25 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Pseudomonas stutzeri RCH2 0.33 Psest_1454 ybaK/ebsC protein 0.21 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH low > 67
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05145 Cys-tRNA(Pro) deacylase 0.25 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 76
Shewanella loihica PV-4 0.32 Shew_0016 ybaK/ebsC protein (RefSeq) 0.24 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) — —
Pseudomonas putida KT2440 0.32 PP_1077 Cys-tRNAPro deacylase 0.22 PP_4808 23S rRNA m3psi1915 methyltransferase low > 96
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS15940 membrane protein 0.28 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H low > 109
Alteromonas macleodii MIT1002 0.32 MIT1002_01641 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.19 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H — —
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS02420 Cys-tRNA(Pro) deacylase 0.29 HMPREF1078_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 61
Pseudomonas sp. RS175 0.32 PFR28_03366 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.22 PFR28_03869 Ribosomal RNA large subunit methyltransferase H low > 88
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS02765 Cys-tRNA(Pro) deacylase 0.30 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 153
Pseudomonas simiae WCS417 0.32 PS417_05585 hypothetical protein 0.21 PS417_24730 50S rRNA methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.21 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 109
Pseudomonas fluorescens SBW25 0.32 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.21 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF288 Transcriptional regulator 0.25 GFF4529 LSU m3Psi1915 methyltransferase RlmH — —
Variovorax sp. SCN45 0.31 GFF3103 Cys-tRNA(Pro) deacylase YbaK 0.28 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) low > 127
Acidovorax sp. GW101-3H11 0.31 Ac3H11_2624 Transcriptional regulator 0.26 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH low > 79
Variovorax sp. OAS795 0.30 ABID97_RS21705 aminoacyl-tRNA deacylase 0.28 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 91
Dechlorosoma suillum PS 0.30 Dsui_1216 ybaK/ebsC protein 0.23 Dsui_0451 hypothetical protein low > 51
Dickeya dianthicola ME23 0.30 DZA65_RS06215 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.25 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 75
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS15180 Cys-tRNA(Pro) deacylase 0.31 HMPREF1181_RS10755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 56
Dickeya dianthicola 67-19 0.30 HGI48_RS05880 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.26 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS15335 Cys-tRNA(Pro) deacylase 0.28 ABI39_RS11895 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 72
Bacteroides ovatus ATCC 8483 0.30 BACOVA_03702 YbaK/EbsC protein 0.30 BACOVA_04305 putative rRNA large subunit m3Psi methyltransferase RlmH low > 94
Bacteroides thetaiotaomicron VPI-5482 0.28 BT0579 putative transcription regulator (NCBI ptt file) 0.30 BT1562 conserved hypothetical protein (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS01730 Cys-tRNA(Pro) deacylase 0.28 HMPREF1058_RS15935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 67

Not shown: 8 genomes with orthologs for A4249_RS11465 only; 16 genomes with orthologs for A4249_RS14825 only