Conservation of cofitness between Sama_0811 and Sama_2491 in Shewanella amazonensis SB2B

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0811 deoxyribodipyrimidine photo-lyase (RefSeq) 1.0 Sama_2491 hypothetical protein (RefSeq) 0.33 11
Shewanella oneidensis MR-1 0.57 SO3384 phrB deoxyribodipyrimidine photolyase (NCBI ptt file) 0.82 SO3369 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_1166 deoxyribodipyrimidine photo-lyase type I (RefSeq) 0.84 Shewana3_1180 hypothetical protein (RefSeq) low > 73
Serratia liquefaciens MT49 0.45 IAI46_06200 deoxyribodipyrimidine photo-lyase 0.74 IAI46_21470 oxidative damage protection protein low > 86
Dickeya dadantii 3937 0.43 DDA3937_RS06405 deoxyribodipyrimidine photo-lyase 0.77 DDA3937_RS04895 oxidative damage protection protein low > 74
Pectobacterium carotovorum WPP14 0.43 HER17_RS14995 deoxyribodipyrimidine photo-lyase 0.74 HER17_RS16630 oxidative damage protection protein low > 75
Rahnella sp. WP5 0.43 EX31_RS23365 deoxyribodipyrimidine photo-lyase 0.72 EX31_RS02740 oxidative damage protection protein low > 89
Shewanella loihica PV-4 0.43 Shew_1479 deoxyribodipyrimidine photo-lyase (RefSeq) 0.77 Shew_1122 hypothetical protein (RefSeq) low > 60
Dickeya dianthicola ME23 0.43 DZA65_RS06795 deoxyribodipyrimidine photo-lyase 0.77 DZA65_RS05240 oxidative damage protection protein low > 75
Dickeya dianthicola 67-19 0.43 HGI48_RS06450 deoxyribodipyrimidine photo-lyase 0.76 HGI48_RS04905 oxidative damage protection protein low > 71
Pantoea sp. MT58 0.42 IAI47_13815 deoxyribodipyrimidine photo-lyase 0.70 IAI47_03555 oxidative damage protection protein low > 76
Escherichia fergusonii Becca 0.42 EFB2_03395 Deoxyribodipyrimidine photo-lyase 0.74 EFB2_00940 putative Fe(2+)-trafficking protein low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF4612 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.75 GFF3066 FIG001341: Probable Fe(2+)-trafficking protein YggX low > 78
Klebsiella michiganensis M5al 0.42 BWI76_RS08335 deoxyribodipyrimidine photo-lyase 0.74 BWI76_RS24160 Fe(2+)-trafficking protein — —
Enterobacter sp. TBS_079 0.42 MPMX20_01343 Deoxyribodipyrimidine photo-lyase 0.77 MPMX20_03819 putative Fe(2+)-trafficking protein low > 85
Escherichia coli Nissle 1917 0.42 ECOLIN_RS03790 deoxyribodipyrimidine photo-lyase 0.73 ECOLIN_RS16475 oxidative damage protection protein low > 52
Erwinia tracheiphila SCR3 0.42 LU632_RS16155 phrB deoxyribodipyrimidine photo-lyase 0.68 LU632_RS05415 oxidative damage protection protein low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_03009 Deoxyribodipyrimidine photo-lyase 0.74 OHPLBJKB_00754 putative Fe(2+)-trafficking protein low > 73
Escherichia coli ECRC98 0.42 JDDGAC_10680 phrB deoxyribodipyrimidine photo-lyase 0.74 JDDGAC_22825 yggX oxidative damage protection protein — —
Escherichia coli ECRC101 0.42 MCAODC_26245 phrB deoxyribodipyrimidine photo-lyase 0.74 MCAODC_09715 yggX oxidative damage protection protein — —
Escherichia coli ECRC99 0.42 KEDOAH_20940 phrB deoxyribodipyrimidine photo-lyase 0.74 KEDOAH_08945 yggX oxidative damage protection protein — —
Escherichia coli ECRC102 0.42 NIAGMN_05080 phrB deoxyribodipyrimidine photo-lyase 0.74 NIAGMN_16960 yggX oxidative damage protection protein — —
Escherichia coli ECRC101 0.42 OKFHMN_07025 phrB deoxyribodipyrimidine photo-lyase 0.74 OKFHMN_19195 yggX oxidative damage protection protein — —
Escherichia coli BW25113 0.42 b0708 phr deoxyribodipyrimidine photolyase, FAD-binding (NCBI) 0.74 b2962 yggX hypothetical protein (NCBI) low > 76
Escherichia coli ECOR38 0.41 HEPCGN_01190 phrB deoxyribodipyrimidine photo-lyase 0.74 HEPCGN_18465 yggX oxidative damage protection protein low > 85
Escherichia coli BL21 0.41 ECD_00668 deoxyribodipyrimidine photolyase, FAD-binding 0.74 ECD_02792 oxidative damage protective factor for iron-sulfur proteins low > 60
Escherichia coli ECOR27 0.41 NOLOHH_23405 phrB deoxyribodipyrimidine photo-lyase 0.74 NOLOHH_11055 yggX oxidative damage protection protein low > 57
Escherichia coli ECRC62 0.41 BNILDI_21400 phrB deoxyribodipyrimidine photo-lyase 0.74 BNILDI_09640 yggX oxidative damage protection protein — —
Marinobacter adhaerens HP15 0.41 HP15_715 deoxyribodipyrimidine photolyase 0.49 HP15_3016 Ion traffic superfamily protein low > 73
Enterobacter asburiae PDN3 0.40 EX28DRAFT_2278 Deoxyribodipyrimidine photolyase 0.77 EX28DRAFT_2999 Fe-S cluster protector protein low > 76
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_14320 deoxyribodipyrimidine photo-lyase 0.76 CSW01_02405 Fe(2+)-trafficking protein — —
Pseudomonas sp. S08-1 0.39 OH686_07850 Deoxyribodipyrimidine photolyase 0.52 OH686_14545 Probable Fe(2+)-trafficking protein YggX low > 80
Pseudomonas putida KT2440 0.38 PP_0739 deoxyribodipyrimidine photolyase 0.50 PP_0285 Fe(2+)-trafficking protein — —
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0961 deoxyribodipyrimidine photo-lyase type I 0.50 Psyr_4902 Protein of unknown function DUF495 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0961 deoxyribodipyrimidine photo-lyase type I 0.50 Psyr_4902 Protein of unknown function DUF495 low > 86
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_5228 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.48 Pf6N2E2_3847 FIG001341: Probable Fe(2+)-trafficking protein YggX low > 103
Pseudomonas stutzeri RCH2 0.37 Psest_2397 Deoxyribodipyrimidine photolyase 0.50 Psest_0144 Fe-S cluster protector protein low > 67
Pseudomonas sp. RS175 0.37 PFR28_03648 Deoxyribodipyrimidine photo-lyase 0.46 PFR28_04924 putative Fe(2+)-trafficking protein low > 88
Pseudomonas simiae WCS417 0.37 PS417_03665 deoxyribodipyrimidine photolyase 0.46 PS417_01540 iron transporter — —
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_14820 deoxyribodipyrimidine photolyase 0.47 AO353_12045 iron transporter low > 101
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_2927 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.46 Pf1N1B4_1632 FIG001341: Probable Fe(2+)-trafficking protein YggX low > 87
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_1589 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.47 PfGW456L13_367 FIG001341: Probable Fe(2+)-trafficking protein YggX low > 87
Pseudomonas fluorescens SBW25 0.36 PFLU_RS03715 deoxyribodipyrimidine photo-lyase 0.46 PFLU_RS01585 oxidative damage protection protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS03715 deoxyribodipyrimidine photo-lyase 0.46 PFLU_RS01585 oxidative damage protection protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_16530 deoxyribodipyrimidine photolyase 0.48 AO356_09835 iron transporter low > 104
Acinetobacter radioresistens SK82 0.35 MPMX26_01004 Deoxyribodipyrimidine photo-lyase 0.44 MPMX26_00184 putative Fe(2+)-trafficking protein low > 36
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0621 Deoxyribodipyrimidine photolyase 0.53 B158DRAFT_0206 Fe-S cluster protector protein low > 40
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF647 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.56 GFF4297 FIG001341: Probable Fe(2+)-trafficking protein YggX low > 90
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS09280 deoxyribodipyrimidine photo-lyase 0.56 HSERO_RS17325 iron transporter — —
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS01855 deoxyribodipyrimidine photo-lyase 0.54 ABZR86_RS19970 oxidative damage protection protein low > 74
Acidovorax sp. GW101-3H11 0.29 Ac3H11_3983 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.57 Ac3H11_580 FIG001341: Probable Fe(2+)-trafficking protein YggX — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS15885 deoxyribodipyrimidine photolyase 0.54 RR42_RS13040 iron transporter low > 128
Variovorax sp. OAS795 0.28 ABID97_RS24680 deoxyribodipyrimidine photo-lyase 0.57 ABID97_RS15460 oxidative damage protection protein — —
Paraburkholderia graminis OAS925 0.28 ABIE53_004843 deoxyribodipyrimidine photo-lyase 0.56 ABIE53_002815 Fe-S cluster biosynthesis and repair protein YggX low > 113
Dechlorosoma suillum PS 0.28 Dsui_0591 deoxyribodipyrimidine photolyase 0.60 Dsui_1571 Fe-S cluster protector protein low > 51
Alteromonas macleodii MIT1002 0.28 MIT1002_02045 Deoxyribodipyrimidine photo-lyase 0.71 MIT1002_00240 putative Fe(2+)-trafficking protein low > 70
Rhodanobacter denitrificans MT42 0.28 LRK55_RS07250 deoxyribodipyrimidine photo-lyase 0.51 LRK55_RS13060 oxidative damage protection protein low > 63
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS17830 deoxyribodipyrimidine photo-lyase 0.56 QEN71_RS05615 oxidative damage protection protein low > 153
Variovorax sp. SCN45 0.28 GFF2156 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.59 GFF1246 FIG001341: Probable Fe(2+)-trafficking protein YggX low > 127
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_06033 deoxyribodipyrimidine photo-lyase type I 0.56 H281DRAFT_00443 Fe-S cluster biosynthesis and repair protein YggX — —
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS07510 DNA photolyase family protein 0.51 LRK54_RS13320 oxidative damage protection protein low > 59
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS33665 deoxyribodipyrimidine photo-lyase 0.54 BPHYT_RS12990 iron transporter low > 109
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS08600 deoxyribodipyrimidine photo-lyase 0.52 ABZR87_RS11010 oxidative damage protection protein low > 80
Ralstonia solanacearum UW163 0.27 UW163_RS00965 deoxyribodipyrimidine photo-lyase 0.53 UW163_RS12845 oxidative damage protection protein — —
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_13930 Deoxyribodipyrimidine photolyase 0.53 OKGIIK_02560 yggX oxidative damage protection protein low > 52
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS12600 deoxyribodipyrimidine photo-lyase 0.53 RALBFv3_RS15385 oxidative damage protection protein — —
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.3484.1 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.49 Xcc-8004.2121.1 FIG001341: Probable Fe(2+)-trafficking protein YggX — —
Lysobacter sp. OAE881 0.23 ABIE51_RS09260 deoxyribodipyrimidine photo-lyase 0.55 ABIE51_RS15145 oxidative damage protection protein — —

Not shown: 17 genomes with orthologs for Sama_0811 only; 3 genomes with orthologs for Sama_2491 only