Conservation of cofitness between Sama_0255 and Sama_0963 in Shewanella amazonensis SB2B

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0255 acetylornithine deacetylase (RefSeq) 1.0 Sama_0963 pseudouridylate synthase (RefSeq) 0.46 8
Shewanella loihica PV-4 0.76 Shew_0201 acetylornithine deacetylase (RefSeq) 0.78 Shew_2825 tRNA pseudouridine synthase B (RefSeq) low > 60
Escherichia coli BW25113 0.58 b3957 argE acetylornithine deacetylase (NCBI) 0.69 b3166 truB tRNA pseudouridine synthase B (NCBI) low > 76
Enterobacter sp. TBS_079 0.58 MPMX20_04523 Acetylornithine deacetylase 0.69 MPMX20_04071 tRNA pseudouridine synthase B low > 85
Escherichia coli ECOR27 0.58 NOLOHH_05735 argE acetylornithine deacetylase 0.69 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli BL21 0.58 ECD_03842 acetylornithine deacetylase 0.69 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase low > 61
Escherichia fergusonii Becca 0.58 EFB2_04657 Acetylornithine deacetylase 0.69 EFB2_00657 tRNA pseudouridine synthase B 0.33 59
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_04093 Acetylornithine deacetylase 0.69 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 73
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4419 acetylornithine deacetylase (ArgE) 0.69 EX28DRAFT_3217 tRNA pseudouridine(55) synthase low > 76
Escherichia coli Nissle 1917 0.58 ECOLIN_RS22840 acetylornithine deacetylase 0.69 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB low > 55
Escherichia coli ECOR38 0.58 HEPCGN_12235 argE acetylornithine deacetylase 0.69 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2343 Acetylornithine deacetylase (EC 3.5.1.16) 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 78
Escherichia coli ECRC62 0.57 BNILDI_05790 argE acetylornithine deacetylase 0.69 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli ECRC100 0.57 OKFHMN_13590 argE acetylornithine deacetylase 0.69 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB low > 80
Escherichia coli ECRC99 0.57 KEDOAH_14570 argE acetylornithine deacetylase 0.69 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC101 0.57 MCAODC_04090 argE acetylornithine deacetylase 0.69 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB low > 87
Escherichia coli ECRC102 0.57 NIAGMN_11340 argE acetylornithine deacetylase 0.69 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC98 0.57 JDDGAC_17215 argE acetylornithine deacetylase 0.69 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB low > 86
Pectobacterium carotovorum WPP14 0.57 HER17_RS20635 acetylornithine deacetylase 0.65 HER17_RS18200 tRNA pseudouridine(55) synthase TruB low > 75
Serratia liquefaciens MT49 0.57 IAI46_24520 acetylornithine deacetylase 0.71 IAI46_01945 tRNA pseudouridine(55) synthase TruB low > 86
Klebsiella michiganensis M5al 0.57 BWI76_RS00840 acetylornithine deacetylase 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase low > 92
Rahnella sp. WP5 0.56 EX31_RS14195 acetylornithine deacetylase 0.64 EX31_RS08530 tRNA pseudouridine(55) synthase TruB low > 89
Dickeya dianthicola ME23 0.56 DZA65_RS00930 acetylornithine deacetylase 0.67 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS00870 acetylornithine deacetylase 0.67 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB low > 71
Dickeya dadantii 3937 0.56 DDA3937_RS20355 acetylornithine deacetylase 0.67 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB low > 74
Pantoea sp. MT58 0.55 IAI47_00900 acetylornithine deacetylase 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB low > 76
Erwinia tracheiphila SCR3 0.55 LU632_RS19620 argE acetylornithine deacetylase 0.65 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB low > 74
Pseudomonas stutzeri RCH2 0.50 Psest_4001 acetylornithine deacetylase (ArgE) 0.47 Psest_0983 tRNA pseudouridine 55 synthase — —
Pseudomonas sp. RS175 0.49 PFR28_04309 Acetylornithine deacetylase 0.46 PFR28_00092 tRNA pseudouridine synthase B — —
Pseudomonas putida KT2440 0.49 PP_5186 acetylornithine deacetylase 0.45 PP_4710 tRNA pseudouridine 55 synthase low > 96
Marinobacter adhaerens HP15 0.49 HP15_3315 acetylornithine deacetylase (ArgE) 0.48 HP15_3065 tRNA pseudouridine synthase B low > 73
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_13080 acetylornithine deacetylase 0.46 AO356_07400 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_4496 Acetylornithine deacetylase (EC 3.5.1.16) 0.46 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_2242 Acetylornithine deacetylase (EC 3.5.1.16) 0.46 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_0253 acetylornithine deacetylase 0.45 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_0253 acetylornithine deacetylase 0.45 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_912 Acetylornithine deacetylase (EC 3.5.1.16) 0.46 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas simiae WCS417 0.48 PS417_27200 acetylornithine deacetylase 0.45 PS417_23960 pseudouridine synthase — —
Pseudomonas fluorescens SBW25 0.47 PFLU_RS28860 acetylornithine deacetylase 0.45 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS28860 acetylornithine deacetylase 0.45 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_08690 acetylornithine deacetylase 0.46 AO353_05550 pseudouridine synthase low > 101
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_13385 acetylornithine deacetylase 0.67 CSW01_03400 tRNA pseudouridine(55) synthase TruB low > 62
Pseudomonas sp. S08-1 0.46 OH686_11125 acetylornithine deacetylase (ArgE) 0.45 OH686_17155 tRNA pseudouridine(55) synthase low > 80
Ralstonia solanacearum GMI1000 0.26 RS_RS08270 acetylornithine deacetylase 0.39 RS_RS06470 tRNA pseudouridine(55) synthase TruB low > 80
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_1675 acetylornithine deacetylase (ArgE) 0.22 Ga0059261_2142 tRNA pseudouridine(55) synthase low > 68
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_04940 acetylornithine deacetylase 0.40 H281DRAFT_05106 tRNA pseudouridine synthase B low > 103
Bosea sp. OAE506 0.25 ABIE41_RS04320 acetylornithine deacetylase 0.30 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB low > 77
Phaeobacter inhibens DSM 17395 0.25 PGA1_c07830 acetylornithine deacetylase ArgE 0.32 PGA1_c32950 tRNA pseudouridine synthase B low > 62
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS13940 acetylornithine deacetylase 0.40 HSERO_RS17985 tRNA pseudouridine synthase B low > 78
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS11720 acetylornithine deacetylase 0.40 BPHYT_RS08080 tRNA pseudouridine synthase B — —
Ralstonia solanacearum UW163 0.24 UW163_RS14760 acetylornithine deacetylase 0.39 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Agrobacterium fabrum C58 0.24 Atu3398 acetylornithine deacetylase 0.29 Atu0085 tRNA pseudouridine 55 synthase low > 89
Paraburkholderia graminis OAS925 0.24 ABIE53_001520 acetylornithine deacetylase 0.40 ABIE53_001832 tRNA pseudouridine55 synthase low > 113
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS01450 acetylornithine deacetylase 0.39 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB low > 76
Ralstonia solanacearum PSI07 0.24 RPSI07_RS16035 acetylornithine deacetylase 0.38 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB low > 81
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS13245 acetylornithine deacetylase 0.37 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB low > 80
Variovorax sp. OAS795 0.23 ABID97_RS04175 acetylornithine deacetylase 0.35 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB low > 91
Sinorhizobium meliloti 1021 0.23 SMa1836 acetylornithine deacetylase 0.29 SMc00321 tRNA pseudouridine synthase B low > 103
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS22070 acetylornithine deacetylase 0.41 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB 0.43 15
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS07840 acetylornithine deacetylase 0.39 RR42_RS12835 tRNA pseudouridine synthase B low > 128
Caulobacter crescentus NA1000 0.23 CCNA_03746 acetylornithine deacetylase 0.31 CCNA_00035 tRNA pseudouridine synthase B low > 66
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_03746 acetylornithine deacetylase 0.31 CCNA_00035 tRNA pseudouridine synthase B low > 67
Acidovorax sp. GW101-3H11 0.23 Ac3H11_4519 Acetylornithine deacetylase (EC 3.5.1.16) 0.32 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 79
Magnetospirillum magneticum AMB-1 0.23 AMB_RS11990 acetylornithine deacetylase 0.29 AMB_RS20810 tRNA pseudouridine(55) synthase TruB low > 64
Azospirillum sp. SherDot2 0.22 MPMX19_03397 Acetylornithine deacetylase 0.31 MPMX19_02524 tRNA pseudouridine synthase B 0.30 57
Rhizobium sp. OAE497 0.22 ABIE40_RS24525 acetylornithine deacetylase 0.28 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB low > 107
Dyella japonica UNC79MFTsu3.2 0.14 ABZR86_RS08710 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB low > 74
Rhodanobacter sp. FW510-T8 0.13 OKGIIK_09445 acetylornithine deacetylase 0.34 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB low > 52
Rhodanobacter denitrificans MT42 0.13 LRK55_RS02150 acetylornithine deacetylase 0.36 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB low > 63
Rhodanobacter denitrificans FW104-10B01 0.12 LRK54_RS02395 acetylornithine deacetylase 0.36 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB low > 59

Not shown: 5 genomes with orthologs for Sama_0255 only; 13 genomes with orthologs for Sama_0963 only