Conservation of cofitness between Sama_0255 and Sama_0327 in Shewanella amazonensis SB2B

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0255 acetylornithine deacetylase (RefSeq) 1.0 Sama_0327 radC DNA repair protein RadC (RefSeq) 0.44 17
Shewanella loihica PV-4 0.76 Shew_0201 acetylornithine deacetylase (RefSeq) 0.82 Shew_3481 DNA repair protein RadC (RefSeq) low > 60
Enterobacter sp. TBS_079 0.58 MPMX20_04523 Acetylornithine deacetylase 0.43 MPMX20_00097 hypothetical protein low > 85
Escherichia coli ECOR27 0.58 NOLOHH_05735 argE acetylornithine deacetylase 0.45 NOLOHH_07500 radC DNA repair protein RadC low > 75
Escherichia coli BW25113 0.58 b3957 argE acetylornithine deacetylase (NCBI) 0.45 b3638 radC DNA repair protein (VIMSS) low > 76
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4419 acetylornithine deacetylase (ArgE) 0.44 EX28DRAFT_3888 DNA repair protein radc low > 76
Escherichia coli Nissle 1917 0.58 ECOLIN_RS22840 acetylornithine deacetylase 0.45 ECOLIN_RS20730 DNA repair protein RadC low > 55
Escherichia coli BL21 0.58 ECD_03842 acetylornithine deacetylase 0.45 ECD_03495 UPF0758 family protein low > 61
Escherichia fergusonii Becca 0.58 EFB2_04657 Acetylornithine deacetylase 0.45 EFB2_00175 hypothetical protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_04093 Acetylornithine deacetylase 0.45 OHPLBJKB_00064 hypothetical protein low > 73
Escherichia coli ECOR38 0.58 HEPCGN_12235 argE acetylornithine deacetylase 0.45 HEPCGN_14445 radC DNA repair protein RadC low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2343 Acetylornithine deacetylase (EC 3.5.1.16) 0.46 GFF371 DNA repair protein RadC low > 78
Escherichia coli ECRC62 0.57 BNILDI_05790 argE acetylornithine deacetylase 0.45 BNILDI_04015 radC DNA repair protein RadC low > 75
Escherichia coli ECRC102 0.57 NIAGMN_11340 argE acetylornithine deacetylase 0.45 NIAGMN_13380 radC DNA repair protein RadC — —
Escherichia coli ECRC101 0.57 MCAODC_04090 argE acetylornithine deacetylase 0.45 MCAODC_06130 radC DNA repair protein RadC low > 87
Escherichia coli ECRC100 0.57 OKFHMN_13590 argE acetylornithine deacetylase 0.45 OKFHMN_15620 radC DNA repair protein RadC low > 80
Escherichia coli ECRC98 0.57 JDDGAC_17215 argE acetylornithine deacetylase 0.45 JDDGAC_19245 radC DNA repair protein RadC low > 86
Pectobacterium carotovorum WPP14 0.57 HER17_RS20635 acetylornithine deacetylase 0.46 HER17_RS20830 DNA repair protein RadC low > 75
Escherichia coli ECRC99 0.57 KEDOAH_14570 argE acetylornithine deacetylase 0.45 KEDOAH_12530 radC DNA repair protein RadC — —
Serratia liquefaciens MT49 0.57 IAI46_24520 acetylornithine deacetylase 0.49 IAI46_24825 DNA repair protein RadC low > 86
Klebsiella michiganensis M5al 0.57 BWI76_RS00840 acetylornithine deacetylase 0.44 BWI76_RS27365 hypothetical protein low > 92
Rahnella sp. WP5 0.56 EX31_RS14195 acetylornithine deacetylase 0.46 EX31_RS14470 JAB domain-containing protein low > 89
Dickeya dianthicola ME23 0.56 DZA65_RS00930 acetylornithine deacetylase 0.49 DZA65_RS00755 JAB domain-containing protein low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS00870 acetylornithine deacetylase 0.49 HGI48_RS00700 DNA repair protein RadC low > 71
Dickeya dadantii 3937 0.56 DDA3937_RS20355 acetylornithine deacetylase 0.50 DDA3937_RS20515 DNA repair protein RadC low > 74
Pantoea sp. MT58 0.55 IAI47_00900 acetylornithine deacetylase 0.46 IAI47_00620 DNA repair protein RadC low > 76
Erwinia tracheiphila SCR3 0.55 LU632_RS19620 argE acetylornithine deacetylase 0.45 LU632_RS21995 radC DNA repair protein RadC low > 74
Pseudomonas stutzeri RCH2 0.50 Psest_4001 acetylornithine deacetylase (ArgE) 0.59 Psest_3803 DNA repair protein radc low > 67
Pseudomonas sp. RS175 0.49 PFR28_04309 Acetylornithine deacetylase 0.56 PFR28_04412 hypothetical protein low > 88
Pseudomonas putida KT2440 0.49 PP_5186 acetylornithine deacetylase 0.51 PP_5284 UPF0758 protein PP_5284 low > 96
Marinobacter adhaerens HP15 0.49 HP15_3315 acetylornithine deacetylase (ArgE) 0.55 HP15_3321 DNA repair protein RadC-like protein low > 73
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_13080 acetylornithine deacetylase 0.54 AO356_12545 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_2242 Acetylornithine deacetylase (EC 3.5.1.16) 0.55 Pf1N1B4_2126 DNA repair protein RadC low > 87
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_4496 Acetylornithine deacetylase (EC 3.5.1.16) 0.55 Pf6N2E2_4377 DNA repair protein RadC low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_0253 acetylornithine deacetylase 0.53 Psyr_0222 DNA replication and repair protein RadC low > 86
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_0253 acetylornithine deacetylase 0.53 Psyr_0222 DNA replication and repair protein RadC low > 86
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_912 Acetylornithine deacetylase (EC 3.5.1.16) 0.53 PfGW456L13_798 DNA repair protein RadC low > 87
Pseudomonas simiae WCS417 0.48 PS417_27200 acetylornithine deacetylase 0.56 PS417_27770 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.47 PFLU_RS28860 acetylornithine deacetylase 0.56 PFLU_RS29445 JAB domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS28860 acetylornithine deacetylase 0.56 PFLU_RS29445 JAB domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_08690 acetylornithine deacetylase 0.57 AO353_09220 hypothetical protein low > 101
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_13385 acetylornithine deacetylase 0.57 CSW01_01155 DNA repair protein RadC low > 62
Pseudomonas sp. S08-1 0.46 OH686_11125 acetylornithine deacetylase (ArgE) 0.55 OH686_13620 UPF0758 family protein low > 80
Ralstonia solanacearum GMI1000 0.26 RS_RS08270 acetylornithine deacetylase 0.50 RS_RS12270 JAB domain-containing protein low > 80
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_1675 acetylornithine deacetylase (ArgE) 0.23 Ga0059261_3175 DNA repair protein radc low > 68
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_04940 acetylornithine deacetylase 0.43 H281DRAFT_04066 DNA replication and repair protein RadC 0.32 25
Bosea sp. OAE506 0.25 ABIE41_RS04320 acetylornithine deacetylase 0.24 ABIE41_RS13815 DNA repair protein RadC low > 77
Phaeobacter inhibens DSM 17395 0.25 PGA1_c07830 acetylornithine deacetylase ArgE 0.29 PGA1_c34550 DNA repair protein RadC low > 62
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS13940 acetylornithine deacetylase 0.42 HSERO_RS05945 hypothetical protein low > 78
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS11720 acetylornithine deacetylase 0.42 BPHYT_RS15625 hypothetical protein — —
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS01450 acetylornithine deacetylase 0.50 RALBFv3_RS04710 JAB domain-containing protein low > 76
Ralstonia solanacearum UW163 0.24 UW163_RS14760 acetylornithine deacetylase 0.50 UW163_RS08960 JAB domain-containing protein — —
Paraburkholderia graminis OAS925 0.24 ABIE53_001520 acetylornithine deacetylase 0.43 ABIE53_003289 DNA repair protein RadC low > 113
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS13245 acetylornithine deacetylase 0.51 ABZR87_RS00330 DNA repair protein RadC low > 80
Ralstonia solanacearum PSI07 0.24 RPSI07_RS16035 acetylornithine deacetylase 0.50 RPSI07_RS12675 JAB domain-containing protein low > 81
Variovorax sp. OAS795 0.23 ABID97_RS04175 acetylornithine deacetylase 0.43 ABID97_RS07700 DNA repair protein RadC low > 91
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS22070 acetylornithine deacetylase 0.45 QEN71_RS03085 DNA repair protein RadC low > 153
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS07840 acetylornithine deacetylase 0.52 RR42_RS16995 hypothetical protein low > 128
Variovorax sp. SCN45 0.23 GFF5006 Uncharacterized deacetylase 0.41 GFF5700 UPF0758 family protein 0.42 32
Acidovorax sp. GW101-3H11 0.23 Ac3H11_4519 Acetylornithine deacetylase (EC 3.5.1.16) 0.41 Ac3H11_1774 DNA repair protein RadC low > 79
Azospirillum brasilense Sp245 0.20 AZOBR_RS31030 acetylornithine deacetylase 0.22 AZOBR_RS04400 DNA repair protein RadC low > 97
Dyella japonica UNC79MFTsu3.2 0.14 ABZR86_RS08710 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) 0.50 ABZR86_RS15615 DNA repair protein RadC low > 74
Rhodanobacter sp. FW510-T8 0.13 OKGIIK_09445 acetylornithine deacetylase 0.49 OKGIIK_15660 radC DNA repair protein RadC low > 52
Rhodanobacter denitrificans MT42 0.13 LRK55_RS02150 acetylornithine deacetylase 0.50 LRK55_RS08695 DNA repair protein RadC low > 63
Rhodanobacter denitrificans FW104-10B01 0.12 LRK54_RS02395 acetylornithine deacetylase 0.50 LRK54_RS09165 DNA repair protein RadC low > 59
Parabacteroides merdae CL09T00C40 0.10 HMPREF1078_RS05835 M20 family metallo-hydrolase 0.28 HMPREF1078_RS04930 DNA repair protein RadC low > 61
Bacteroides stercoris CC31F 0.09 HMPREF1181_RS02880 M20 family metallo-hydrolase 0.28 HMPREF1181_RS03225 DNA repair protein RadC low > 56

Not shown: 8 genomes with orthologs for Sama_0255 only; 25 genomes with orthologs for Sama_0327 only