| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dinoroseobacter shibae DFL-12 | 1.0 | Dshi_1938 | | tRNA pseudouridine synthase A (RefSeq) | 1.0 | Dshi_1525 | | transcriptional regulator, AraC family (RefSeq) | 0.45 | 5 |
| Phaeobacter inhibens DSM 17395 | 0.72 | PGA1_c05650 | | tRNA pseudouridine synthase A | 0.74 | PGA1_c15870 | | transcriptional regulator, AraC family | low | > 62 |
| Rhizobium sp. OAE497 | 0.53 | ABIE40_RS01915 | | tRNA pseudouridine(38-40) synthase TruA | 0.42 | ABIE40_RS11210 | | GlxA family transcriptional regulator | low | > 107 |
| Azospirillum sp. SherDot2 | 0.53 | MPMX19_02005 | | tRNA pseudouridine synthase A | 0.41 | MPMX19_04745 | | HTH-type transcriptional regulator CdhR | — | — |
| Agrobacterium fabrum C58 | 0.50 | Atu0368 | | tRNA pseudouridine synthase I | 0.43 | Atu1767 | | transcriptional regulator, AraC family | low | > 89 |
| Caulobacter crescentus NA1000 Δfur | 0.50 | CCNA_00280 | | tRNA pseudouridine synthase A | 0.20 | CCNA_03054 | | AraC-family transcriptional regulator | low | > 67 |
| Caulobacter crescentus NA1000 | 0.50 | CCNA_00280 | | tRNA pseudouridine synthase A | 0.20 | CCNA_03054 | | AraC-family transcriptional regulator | low | > 66 |
| Sinorhizobium meliloti 1021 | 0.49 | SMc01099 | | tRNA pseudouridine synthase A | 0.42 | SMc04169 | | transcriptional regulator | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.48 | Ga0059261_0647 | | tRNA pseudouridine(38-40) synthase | 0.15 | Ga0059261_1673 | | transcriptional regulator, AraC family with amidase-like domain | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.47 | TX73_003225 | | tRNA pseudouridine(38-40) synthase TruA | 0.19 | TX73_012535 | | GlxA family transcriptional regulator | low | > 86 |
| Bosea sp. OAE506 | 0.44 | ABIE41_RS00165 | | tRNA pseudouridine(38-40) synthase TruA | 0.16 | ABIE41_RS09540 | | transcriptional regulator FtrA | low | > 77 |
| Paraburkholderia sabiae LMG 24235 | 0.37 | QEN71_RS17635 | | tRNA pseudouridine(38-40) synthase TruA | 0.36 | QEN71_RS08305 | | GlxA family transcriptional regulator | low | > 153 |
| Ralstonia solanacearum IBSBF1503 | 0.36 | RALBFv3_RS02595 | | tRNA pseudouridine(38-40) synthase TruA | 0.16 | RALBFv3_RS23400 | | AraC family transcriptional regulator | — | — |
| Ralstonia solanacearum UW163 | 0.36 | UW163_RS11130 | | tRNA pseudouridine(38-40) synthase TruA | 0.16 | UW163_RS16650 | | AraC family transcriptional regulator | — | — |
| Ralstonia solanacearum GMI1000 | 0.35 | RS_RS09975 | | tRNA pseudouridine(38-40) synthase TruA | 0.36 | RS_RS17455 | | GlxA family transcriptional regulator | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.35 | ABZR87_RS14510 | | tRNA pseudouridine(38-40) synthase TruA | 0.19 | ABZR87_RS16980 | | GlxA family transcriptional regulator | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_004807 | | tRNA pseudouridine38-40 synthase | 0.37 | ABIE53_006139 | | transcriptional regulator GlxA family with amidase domain | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.34 | H281DRAFT_06069 | | tRNA pseudouridine38-40 synthase | 0.36 | H281DRAFT_03176 | | transcriptional regulator, AraC family with amidase-like domain | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS33885 | | tRNA pseudouridine synthase A | 0.36 | BPHYT_RS25175 | | AraC family transcriptional regulator | — | — |
| Pseudomonas sp. S08-1 | 0.33 | OH686_04450 | | tRNA pseudouridine(38-40) synthase | 0.30 | OH686_21280 | | Arginine pathway regulatory protein ArgR, repressor of arg regulon | low | > 80 |
| Dechlorosoma suillum PS | 0.32 | Dsui_3194 | | pseudouridylate synthase I | 0.19 | Dsui_3428 | | transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | low | > 51 |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS08440 | | tRNA pseudouridine(38-40) synthase TruA | 0.16 | ABID97_RS26935 | | GlxA family transcriptional regulator | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_1532 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.14 | Ac3H11_1323 | | Transcriptional regulator, AraC family | low | > 79 |
| Rahnella sp. WP5 | 0.31 | EX31_RS19600 | | tRNA pseudouridine(38-40) synthase TruA | 0.20 | EX31_RS11395 | | transcriptional regulator FtrA | low | > 89 |
| Pseudomonas putida KT2440 | 0.31 | PP_1994 | | tRNA pseudouridine (38-40)synthase | 0.39 | PP_0298 | | AraC-family transcriptional regulator | low | > 96 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_0286 | | tRNA pseudouridine(38-40) synthase | 0.19 | EX28DRAFT_1218 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | low | > 76 |
| Serratia liquefaciens MT49 | 0.31 | IAI46_17840 | | tRNA pseudouridine(38-40) synthase TruA | 0.17 | IAI46_16615 | | helix-turn-helix domain-containing protein | low | > 86 |
| Enterobacter sp. TBS_079 | 0.31 | MPMX20_03253 | | tRNA pseudouridine synthase A | 0.20 | MPMX20_02247 | | HTH-type transcriptional regulator CdhR | low | > 85 |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS04265 | | tRNA pseudouridine(38-40) synthase TruA | 0.35 | ABCV34_RS06395 | | GlxA family transcriptional regulator | low | > 48 |
| Klebsiella michiganensis M5al | 0.30 | BWI76_RS20380 | | tRNA pseudouridine(38-40) synthase TruA | 0.18 | BWI76_RS15355 | | transcriptional regulator FtrA | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS06990 | | tRNA pseudouridine(38-40) synthase TruA | 0.19 | HER17_RS21035 | | transcriptional regulator FtrA | low | > 75 |
| Escherichia coli ECRC99 | 0.30 | KEDOAH_05525 | truA | aspartate-semialdehyde dehydrogenase | 0.16 | KEDOAH_27380 | ftrA | transcriptional regulator FtrA | — | — |
| Escherichia coli ECRC101 | 0.30 | OKFHMN_22670 | truA | aspartate-semialdehyde dehydrogenase | 0.16 | OKFHMN_01050 | ftrA | transcriptional regulator FtrA | — | — |
| Escherichia coli ECRC101 | 0.30 | MCAODC_13710 | truA | aspartate-semialdehyde dehydrogenase | 0.16 | MCAODC_16875 | ftrA | transcriptional regulator FtrA | — | — |
| Shewanella loihica PV-4 | 0.30 | Shew_2306 | | tRNA pseudouridine synthase A (RefSeq) | 0.17 | Shew_3186 | | AraC family transcriptional regulator (RefSeq) | — | — |
| Escherichia coli ECOR38 | 0.30 | HEPCGN_21875 | truA | aspartate-semialdehyde dehydrogenase | 0.16 | HEPCGN_26900 | ftrA | transcriptional regulator FtrA | low | > 85 |
| Escherichia coli ECRC102 | 0.30 | NIAGMN_20445 | truA | aspartate-semialdehyde dehydrogenase | 0.16 | NIAGMN_25195 | ftrA | transcriptional regulator FtrA | — | — |
| Escherichia coli ECRC98 | 0.30 | JDDGAC_26630 | truA | aspartate-semialdehyde dehydrogenase | 0.16 | JDDGAC_03560 | ftrA | transcriptional regulator FtrA | — | — |
| Dickeya dianthicola 67-19 | 0.30 | HGI48_RS14435 | | tRNA pseudouridine(38-40) synthase TruA | 0.17 | HGI48_RS21675 | | helix-turn-helix domain-containing protein | low | > 71 |
| Dickeya dianthicola ME23 | 0.30 | DZA65_RS15370 | | tRNA pseudouridine(38-40) synthase TruA | 0.17 | DZA65_RS22660 | | helix-turn-helix domain-containing protein | low | > 75 |
| Kangiella aquimarina DSM 16071 | 0.30 | B158DRAFT_1483 | | pseudouridylate synthase I | 0.17 | B158DRAFT_0570 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | low | > 40 |
| Dickeya dadantii 3937 | 0.30 | DDA3937_RS14465 | | tRNA pseudouridine(38-40) synthase TruA | 0.17 | DDA3937_RS21325 | | helix-turn-helix domain-containing protein | low | > 74 |
| Pseudomonas sp. RS175 | 0.29 | PFR28_02817 | | tRNA pseudouridine synthase A | 0.40 | PFR28_04161 | | HTH-type transcriptional regulator CdhR | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.29 | Pf1N1B4_7 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.42 | Pf1N1B4_5138 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.29 | PfGW456L13_3941 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.40 | PfGW456L13_2751 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.29 | Pf6N2E2_70 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.40 | Pf6N2E2_4686 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_21435 | | pseudouridine synthase | 0.40 | AO356_13825 | | AraC family transcriptional regulator | low | > 104 |
| Pantoea sp. MT58 | 0.29 | IAI47_06245 | | tRNA pseudouridine(38-40) synthase TruA | 0.18 | IAI47_21485 | | helix-turn-helix domain-containing protein | low | > 76 |
| Shewanella sp. ANA-3 | 0.29 | Shewana3_1479 | truA | tRNA pseudouridine synthase A (RefSeq) | 0.17 | Shewana3_2327 | | transcriptional regulator (RefSeq) | low | > 73 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_1662 | | tRNA pseudouridine synthase | 0.40 | Psyr_4708 | | transcriptional regulator, AraC family with amidase-like domain protein | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_20660 | | pseudouridine synthase | 0.40 | AO353_25045 | | AraC family transcriptional regulator | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_1662 | | tRNA pseudouridine synthase | 0.40 | Psyr_4708 | | transcriptional regulator, AraC family with amidase-like domain protein | low | > 86 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.28 | Xcc-8004.1961.1 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.18 | Xcc-8004.2184.1 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | 0.34 | 15 |
| Pseudomonas fluorescens SBW25 | 0.28 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | 0.41 | PFLU_RS11130 | | GlxA family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.28 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | 0.41 | PFLU_RS11130 | | GlxA family transcriptional regulator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_18565 | | pseudouridine synthase | 0.41 | PS417_10875 | | AraC family transcriptional regulator | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.27 | ABZR86_RS08015 | | tRNA pseudouridine(38-40) synthase TruA | 0.18 | ABZR86_RS14665 | | transcriptional regulator FtrA | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.25 | LRK55_RS01480 | | tRNA pseudouridine(38-40) synthase TruA | 0.12 | LRK55_RS16805 | | DJ-1/PfpI family protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.25 | LRK54_RS01700 | | tRNA pseudouridine(38-40) synthase TruA | 0.12 | LRK54_RS17095 | | helix-turn-helix domain-containing protein | low | > 59 |
| Desulfovibrio vulgaris Miyazaki F | 0.19 | DvMF_1395 | truA | tRNA pseudouridine synthase A (RefSeq) | 0.15 | DvMF_2560 | | transcriptional regulator, AraC family (RefSeq) | low | > 51 |
Not shown: 41 genomes with orthologs for Dshi_1938 only; 0 genomes with orthologs for Dshi_1525 only