Conservation of cofitness between SO1962 and SO0330 in Shewanella oneidensis MR-1

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 1.0 SO0330 conserved hypothetical protein (NCBI ptt file) 0.42 18
Shewanella sp. ANA-3 0.97 Shewana3_2482 4-hydroxyphenylpyruvate dioxygenase (RefSeq) 0.93 Shewana3_3841 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.86 Shew_2155 4-hydroxyphenylpyruvate dioxygenase (RefSeq) 0.78 Shew_0262 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.86 Sama_1568 4-hydroxyphenylpyruvate dioxygenase (RefSeq) 0.29 Sama_2755 hypothetical protein (RefSeq) low > 62
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_05849 4-hydroxyphenylpyruvate dioxygenase 0.38 H281DRAFT_00914 Uncharacterized conserved protein YdiU, UPF0061 family low > 103
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS18295 4-hydroxyphenylpyruvate dioxygenase 0.38 BPHYT_RS09550 hypothetical protein low > 109
Paraburkholderia graminis OAS925 0.44 ABIE53_000012 4-hydroxyphenylpyruvate dioxygenase 0.38 ABIE53_002149 uncharacterized protein YdiU (UPF0061 family) low > 113
Ralstonia solanacearum PSI07 0.44 RPSI07_RS09575 4-hydroxyphenylpyruvate dioxygenase 0.36 RPSI07_RS16295 YdiU family protein low > 81
Ralstonia solanacearum GMI1000 0.43 RS_RS15585 4-hydroxyphenylpyruvate dioxygenase 0.36 RS_RS08830 YdiU family protein low > 80
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS07685 4-hydroxyphenylpyruvate dioxygenase 0.36 RALBFv3_RS01180 YdiU family protein low > 76
Ralstonia solanacearum UW163 0.43 UW163_RS05940 4-hydroxyphenylpyruvate dioxygenase 0.36 UW163_RS14490 YdiU family protein — —
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS28440 4-hydroxyphenylpyruvate dioxygenase 0.38 QEN71_RS21900 YdiU family protein low > 153
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS03395 4-hydroxyphenylpyruvate dioxygenase 0.35 ABZR87_RS12630 protein adenylyltransferase SelO low > 80
Variovorax sp. SCN45 0.42 GFF1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) 0.37 GFF1330 UPF0061 protein YdiU low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF1741 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) 0.38 GFF4580 Selenoprotein O and cysteine-containing homologs low > 90
Variovorax sp. OAS795 0.41 ABID97_RS25360 4-hydroxyphenylpyruvate dioxygenase 0.38 ABID97_RS15700 protein adenylyltransferase SelO low > 91
Alteromonas macleodii MIT1002 0.41 MIT1002_01553 4-hydroxyphenylpyruvate dioxygenase 0.16 MIT1002_03272 hypothetical protein low > 70
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_3330 4-hydroxyphenylpyruvate dioxygenase 0.42 Psyr_0494 Protein of unknown function UPF0061 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_3330 4-hydroxyphenylpyruvate dioxygenase 0.42 Psyr_0494 Protein of unknown function UPF0061 low > 86
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_2935 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.43 PfGW456L13_231 Selenoprotein O and cysteine-containing homologs low > 87
Castellaniella sp019104865 MT123 0.41 ABCV34_RS09775 4-hydroxyphenylpyruvate dioxygenase 0.33 ABCV34_RS04315 YdiU family protein low > 48
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS14610 4-hydroxyphenylpyruvate dioxygenase 0.43 PFLU_RS02195 YdiU family protein low > 109
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS08335 4-hydroxyphenylpyruvate dioxygenase 0.39 HSERO_RS11220 hypothetical protein low > 78
Pseudomonas fluorescens SBW25 0.41 PFLU_RS14610 4-hydroxyphenylpyruvate dioxygenase 0.43 PFLU_RS02195 YdiU family protein low > 109
Pseudomonas simiae WCS417 0.41 PS417_14005 4-hydroxyphenylpyruvate dioxygenase 0.43 PS417_02140 hypothetical protein low > 88
Pseudomonas sp. RS175 0.41 PFR28_02475 4-hydroxyphenylpyruvate dioxygenase 0.44 PFR28_05043 Protein adenylyltransferase SelO low > 88
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_5003 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) 0.43 Pf1N1B4_1498 Selenoprotein O and cysteine-containing homologs low > 87
Pseudomonas lactucae CFBP13502 0.41 GEMAOFIL_02938 4-hydroxyphenylpyruvate dioxygenase 0.43 GEMAOFIL_00665 Protein adenylyltransferase SelO low > 93
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_06775 4-hydroxyphenylpyruvate dioxygenase 0.41 CSW01_09655 SELO family protein low > 62
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_22845 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.42 AO356_09050 hypothetical protein low > 104
Pseudomonas sp. BP01 0.41 JOY50_RS24385 hppD 4-hydroxyphenylpyruvate dioxygenase 0.44 JOY50_RS09370 selO protein adenylyltransferase SelO low > 84
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS33500 4-hydroxyphenylpyruvate dioxygenase 0.38 RR42_RS11160 hypothetical protein low > 128
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_456 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.42 Pf6N2E2_3692 Selenoprotein O and cysteine-containing homologs low > 103
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_26925 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.42 AO353_12770 hypothetical protein low > 101
Pseudomonas putida KT2440 0.40 PP_3433 4-hydroxyphenylpyruvate dioxygenase 0.44 PP_5068 conserved protein of unknown function, UPF0061 family low > 96
Lysobacter sp. OAE881 0.40 ABIE51_RS04075 4-hydroxyphenylpyruvate dioxygenase 0.31 ABIE51_RS12255 protein adenylyltransferase SelO low > 62
Pseudomonas sp. DMC3 0.40 GFF2935 4-hydroxyphenylpyruvate dioxygenase 0.40 GFF3135 Protein adenylyltransferase SelO low > 89
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_00780 hppD 4-hydroxyphenylpyruvate dioxygenase 0.32 OKGIIK_09030 selO YdiU family protein low > 53
Rhodopseudomonas palustris CGA009 0.40 TX73_000025 4-hydroxyphenylpyruvate dioxygenase 0.30 TX73_015750 YdiU family protein low > 86
Sinorhizobium meliloti 1021 0.40 SMc03211 4-hydroxyphenylpyruvate dioxygenase 0.29 SMc00453 hypothetical protein low > 103
Pseudomonas sp. SVBP6 0.40 COO64_RS25130 hppD 4-hydroxyphenylpyruvate dioxygenase 0.40 COO64_RS13240 selO protein adenylyltransferase SelO low > 93
Acinetobacter baumannii LAC-4 0.39 RR41_RS00325 4-hydroxyphenylpyruvate dioxygenase 0.28 RR41_RS03080 YdiU family protein low > 55
Phaeobacter inhibens DSM 17395 0.39 PGA1_c07610 4-hydroxyphenylpyruvate dioxygenase Hpd 0.30 PGA1_c11360 Uncharacterized conserved protein low > 62
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS18470 4-hydroxyphenylpyruvate dioxygenase 0.34 ABZR86_RS00335 protein adenylyltransferase SelO low > 74
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1849 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.40 Ac3H11_2534 Selenoprotein O and cysteine-containing homologs low > 79
Acinetobacter radioresistens SK82 0.38 MPMX26_01476 4-hydroxyphenylpyruvate dioxygenase 0.29 MPMX26_02624 Protein adenylyltransferase SelO — —
Pseudomonas segetis P6 0.38 MPMX49_02855 4-hydroxyphenylpyruvate dioxygenase 0.41 MPMX49_04221 Protein adenylyltransferase SelO low > 75
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS05850 4-hydroxyphenylpyruvate dioxygenase 0.32 LRK54_RS15955 YdiU family protein low > 59
Pseudomonas aeruginosa PA14 0.37 IKLFDK_03830 4-hydroxyphenylpyruvate dioxygenase 0.41 IKLFDK_28420 YdiU family protein low > 100
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.578.1 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) 0.33 Xcc-8004.2272.1 Selenoprotein O and cysteine-containing homologs low > 74
Pseudomonas stutzeri RCH2 0.37 Psest_3514 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.39 Psest_0396 Uncharacterized conserved protein low > 67
Pseudomonas sp. S08-1 0.37 OH686_21080 4-hydroxyphenylpyruvate dioxygenase 0.40 OH686_09805 UPF0061 protein YdiU low > 80
Rhodanobacter denitrificans MT42 0.37 LRK55_RS05605 4-hydroxyphenylpyruvate dioxygenase 0.32 LRK55_RS15710 YdiU family protein low > 63
Rhodanobacter sp000427505 FW510-R12 0.37 LRK53_RS17215 4-hydroxyphenylpyruvate dioxygenase 0.32 LRK53_RS12815 YdiU family protein low > 59
Dickeya dadantii 3937 0.37 DDA3937_RS21335 4-hydroxyphenylpyruvate dioxygenase 0.42 DDA3937_RS12935 YdiU family protein low > 74
Dickeya dianthicola ME23 0.37 DZA65_RS22650 4-hydroxyphenylpyruvate dioxygenase 0.42 DZA65_RS13470 YdiU family protein low > 75
Dickeya dianthicola 67-19 0.36 HGI48_RS21665 4-hydroxyphenylpyruvate dioxygenase 0.42 HGI48_RS13010 YdiU family protein low > 71
Cellulophaga baltica 18 0.25 M666_RS03725 4-hydroxyphenylpyruvate dioxygenase 0.31 M666_RS02400 YdiU family protein low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_09345 4-hydroxyphenylpyruvate dioxygenase 0.33 CA264_03360 hypothetical protein low > 74

Not shown: 10 genomes with orthologs for SO1962 only; 32 genomes with orthologs for SO0330 only