Conservation of cofitness between b3553 and b3389 in Escherichia coli BW25113

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3553 yiaE putative dehydrogenase (VIMSS) 1.0 b3389 aroB 3-dehydroquinate synthase (NCBI) 0.30 7
Escherichia coli ECRC102 1.00 NIAGMN_13780 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.99 NIAGMN_14885 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC62 1.00 BNILDI_03580 ghrB glyoxylate/hydroxypyruvate reductase GhrB 1.00 BNILDI_02615 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC98 1.00 JDDGAC_19650 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.99 JDDGAC_20745 aroB 3-dehydroquinate synthase — —
Escherichia fergusonii Becca 1.00 EFB2_00254 Glyoxylate/hydroxypyruvate reductase B 1.00 EFB2_00439 3-dehydroquinate synthase low > 86
Escherichia coli ECRC99 1.00 KEDOAH_12130 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.99 KEDOAH_11025 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC101 1.00 MCAODC_06535 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.99 MCAODC_07645 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC101 1.00 OKFHMN_16020 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.99 OKFHMN_17115 aroB 3-dehydroquinate synthase — —
Escherichia coli ECOR27 1.00 NOLOHH_07965 ghrB glyoxylate/hydroxypyruvate reductase GhrB 1.00 NOLOHH_08905 aroB 3-dehydroquinate synthase low > 57
Escherichia coli BL21 1.00 ECD_03403 glyoxylate/hydroxypyruvate reductase B 1.00 ECD_03241 3-dehydroquinate synthase low > 60
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20330 glyoxylate/hydroxypyruvate reductase GhrB 0.99 ECOLIN_RS19360 3-dehydroquinate synthase low > 52
Escherichia coli ECOR38 0.99 HEPCGN_14910 ghrB glyoxylate/hydroxypyruvate reductase GhrB 1.00 HEPCGN_15935 aroB 3-dehydroquinate synthase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00153 Glyoxylate/hydroxypyruvate reductase B 0.99 OHPLBJKB_00314 3-dehydroquinate synthase low > 73
Klebsiella michiganensis M5al 0.87 BWI76_RS26960 bifunctional glyoxylate/hydroxypyruvate reductase B 0.85 BWI76_RS26085 3-dehydroquinate synthase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF458 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) 0.86 GFF630 3-dehydroquinate synthase (EC 4.2.3.4) low > 78
Enterobacter sp. TBS_079 0.84 MPMX20_00177 Glyoxylate/hydroxypyruvate reductase B 0.89 MPMX20_04278 3-dehydroquinate synthase low > 85
Enterobacter asburiae PDN3 0.81 EX28DRAFT_3817 Lactate dehydrogenase and related dehydrogenases 0.88 EX28DRAFT_4153 3-dehydroquinate synthase (EC 4.2.3.4) low > 76
Serratia liquefaciens MT49 0.74 IAI46_00085 glyoxylate/hydroxypyruvate reductase GhrB 0.81 IAI46_23700 3-dehydroquinate synthase 0.46 16
Rahnella sp. WP5 0.69 EX31_RS05925 glyoxylate/hydroxypyruvate reductase GhrB 0.84 EX31_RS04720 3-dehydroquinate synthase — —
Pantoea sp. MT58 0.69 IAI47_00110 glyoxylate/hydroxypyruvate reductase GhrB 0.84 IAI47_01895 3-dehydroquinate synthase — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS21175 glyoxylate/hydroxypyruvate reductase GhrB 0.79 HER17_RS01780 3-dehydroquinate synthase low > 75
Dickeya dianthicola 67-19 0.68 HGI48_RS00175 glyoxylate/hydroxypyruvate reductase GhrB 0.80 HGI48_RS19675 3-dehydroquinate synthase — —
Dickeya dianthicola ME23 0.67 DZA65_RS00195 glyoxylate/hydroxypyruvate reductase GhrB 0.80 DZA65_RS20760 3-dehydroquinate synthase — —
Dickeya dadantii 3937 0.65 DDA3937_RS21080 glyoxylate/hydroxypyruvate reductase GhrB 0.81 DDA3937_RS19545 3-dehydroquinate synthase — —
Pseudomonas sp. RS175 0.56 PFR28_01596 Glyoxylate/hydroxypyruvate reductase B 0.54 PFR28_05013 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_627 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) 0.55 Pf6N2E2_3754 3-dehydroquinate synthase (EC 4.2.3.4) — —
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS09030 NAD(P)-dependent oxidoreductase 0.50 ABZR87_RS02590 3-dehydroquinate synthase low > 80
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS07265 D-glycerate dehydrogenase 0.51 QEN71_RS28035 3-dehydroquinate synthase low > 153
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_26885 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) 0.54 AO353_12505 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_24675 bifunctional glyoxylate/hydroxypyruvate reductase B 0.55 AO356_09385 3-dehydroquinate synthase — —
Pseudomonas fluorescens SBW25 0.53 PFLU_RS13240 D-glycerate dehydrogenase 0.55 PFLU_RS02030 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_4763 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) 0.55 Pf1N1B4_1537 3-dehydroquinate synthase (EC 4.2.3.4) — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_2948 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) 0.55 PfGW456L13_275 3-dehydroquinate synthase (EC 4.2.3.4) low > 87
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS13240 D-glycerate dehydrogenase 0.55 PFLU_RS02030 3-dehydroquinate synthase — —
Pseudomonas simiae WCS417 0.53 PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) 0.55 PS417_01985 3-dehydroquinate synthase — —
Paraburkholderia graminis OAS925 0.52 ABIE53_002336 gluconate 2-dehydrogenase 0.52 ABIE53_003740 3-dehydroquinate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_05213 gluconate 2-dehydrogenase 0.51 H281DRAFT_05615 3-dehydroquinate synthase — —
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS11290 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) (from data) 0.52 BPHYT_RS17885 3-dehydroquinate synthase low > 109
Pseudomonas putida KT2440 0.48 PP_3376 putative phosphonate dehydrogenase 0.55 PP_5078 3-dehydroquinate synthase — —
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_1043 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein 0.54 Psyr_0409 3-dehydroquinate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_1043 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein 0.54 Psyr_0409 3-dehydroquinate synthase — —
Castellaniella sp019104865 MT123 0.45 ABCV34_RS08615 D-glycerate dehydrogenase 0.46 ABCV34_RS12705 3-dehydroquinate synthase — —
Variovorax sp. SCN45 0.43 GFF2715 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) 0.49 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) low > 127
Acinetobacter radioresistens SK82 0.42 MPMX26_01125 Glyoxylate/hydroxypyruvate reductase B 0.50 MPMX26_02810 3-dehydroquinate synthase — —
Variovorax sp. OAS795 0.41 ABID97_RS20025 D-glycerate dehydrogenase 0.53 ABID97_RS23255 3-dehydroquinate synthase — —
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS09465 bifunctional glyoxylate/hydroxypyruvate reductase B 0.52 RR42_RS19005 3-dehydroquinate synthase low > 128
Ralstonia solanacearum PSI07 0.39 RPSI07_RS02805 D-glycerate dehydrogenase 0.50 RPSI07_RS10300 3-dehydroquinate synthase — —
Ralstonia solanacearum GMI1000 0.39 RS_RS21645 D-glycerate dehydrogenase 0.51 RS_RS14880 3-dehydroquinate synthase — —
Acidovorax sp. GW101-3H11 0.37 Ac3H11_2599 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) 0.50 Ac3H11_4705 3-dehydroquinate synthase (EC 4.2.3.4) low > 79
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.1956.1 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) 0.41 Xcc-8004.1615.1 3-dehydroquinate synthase (EC 4.2.3.4) low > 74
Lysobacter sp. OAE881 0.36 ABIE51_RS08225 D-glycerate dehydrogenase 0.41 ABIE51_RS16100 3-dehydroquinate synthase — —
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_04810 D-glycerate dehydrogenase 0.42 OKGIIK_11185 aroB 3-dehydroquinate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF3835 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) 0.50 GFF1331 3-dehydroquinate synthase (EC 4.2.3.4) low > 90
Rhizobium sp. OAE497 0.31 ABIE40_RS14685 D-glycerate dehydrogenase 0.38 ABIE40_RS17670 3-dehydroquinate synthase — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS08035 D-glycerate dehydrogenase 0.42 ABZR86_RS10480 3-dehydroquinate synthase low > 74
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS14340 D-glycerate dehydrogenase 0.50 RALBFv3_RS06935 3-dehydroquinate synthase — —
Ralstonia solanacearum UW163 0.30 UW163_RS11805 D-glycerate dehydrogenase 0.50 UW163_RS06680 3-dehydroquinate synthase — —
Azospirillum sp. SherDot2 0.29 MPMX19_02367 Glycerate dehydrogenase 0.37 MPMX19_02639 3-dehydroquinate synthase — —
Sinorhizobium meliloti 1021 0.29 SMc02849 2-hydroxyacid dehydrogenase 0.38 SMc00696 3-dehydroquinate synthase — —
Azospirillum brasilense Sp245 0.28 AZOBR_RS01325 2-hydroxyacid dehydrogenase 0.38 AZOBR_RS03220 3-dehydroquinate synthase — —
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_03838 gluconate 2-dehydrogenase/glyoxylate reductase/hydroxypyruvate reductase 0.41 CCNA_03104 3-dehydroquinate synthase low > 67
Agrobacterium fabrum C58 0.28 Atu0077 D-isomer specific 2-hydroxyacid dehydrogenases family protein 0.38 Atu3625 3-dehydroquinate synthase — —
Caulobacter crescentus NA1000 0.28 CCNA_03838 gluconate 2-dehydrogenase/glyoxylate reductase/hydroxypyruvate reductase 0.41 CCNA_03104 3-dehydroquinate synthase low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS12365 D-glycerate dehydrogenase 0.38 A4249_RS04175 3-dehydroquinate synthase — —
Magnetospirillum magneticum AMB-1 0.26 AMB_RS00985 D-glycerate dehydrogenase 0.40 AMB_RS19865 3-dehydroquinate synthase — —
Dinoroseobacter shibae DFL-12 0.26 Dshi_2643 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq) 0.36 Dshi_1608 3-dehydroquinate synthase (RefSeq) — —
Rhodospirillum rubrum S1H 0.26 Rru_A3790 Glycolate reductase (NCBI) 0.41 Rru_A3741 3-dehydroquinate synthase (NCBI) — —
Pseudomonas stutzeri RCH2 0.26 Psest_0431 Lactate dehydrogenase and related dehydrogenases 0.53 Psest_3713 3-dehydroquinate synthase — —
Rhodopseudomonas palustris CGA009 0.25 TX73_002195 D-glycerate dehydrogenase 0.37 TX73_002610 3-dehydroquinate synthase — —
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1479 Lactate dehydrogenase and related dehydrogenases 0.36 Ga0059261_3591 3-dehydroquinate synthase (EC 4.2.3.4) — —
Bacteroides ovatus ATCC 8483 0.22 BACOVA_03970 4-phosphoerythronate dehydrogenase 0.21 BACOVA_04629 3-dehydroquinate synthase — —
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS16980 D-2-hydroxyacid dehydrogenase 0.21 HMPREF1181_RS09265 3-dehydroquinate synthase low > 56
Shewanella oneidensis MR-1 0.21 SO3631 hprA glycerate dehydrogenase (NCBI ptt file) 0.61 SO0287 aroB 3-dehydroquinate synthase (NCBI ptt file) low > 76
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS00820 D-2-hydroxyacid dehydrogenase 0.25 ABZR88_RS05215 3-dehydroquinate synthase — —

Not shown: 6 genomes with orthologs for b3553 only; 16 genomes with orthologs for b3389 only