| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b4214 | cysQ | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | 1.0 | b3281 | aroE | dehydroshikimate reductase, NAD(P)-binding (NCBI) | 0.90 | 19 |
| Escherichia fergusonii Becca | 1.00 | EFB2_04314 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.96 | EFB2_00542 | | Shikimate dehydrogenase (NADP(+)) | low | > 86 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_10230 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.97 | HEPCGN_16385 | aroE | shikimate dehydrogenase | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_03819 | | '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 | 1.00 | OHPLBJKB_00422 | | Shikimate dehydrogenase (NADP(+)) | low | > 73 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS24480 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.97 | ECOLIN_RS18840 | | shikimate dehydrogenase | low | > 52 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_04295 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.99 | NOLOHH_09355 | aroE | shikimate dehydrogenase | low | > 57 |
| Escherichia coli BL21 | 1.00 | ECD_04086 | | 3'(2'),5'-bisphosphate nucleotidase | 1.00 | ECD_03132 | | dehydroshikimate reductase, NAD(P)-binding | low | > 60 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_15675 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.98 | JDDGAC_21185 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_07225 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.99 | BNILDI_02165 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_09885 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.98 | NIAGMN_15325 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC101 | 1.00 | OKFHMN_12035 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.98 | OKFHMN_17565 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_16120 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.98 | KEDOAH_10585 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_02550 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.98 | MCAODC_08085 | aroE | shikimate dehydrogenase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.86 | GFF868 | | '3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)' transl_table=11 | 0.87 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.35 | 39 |
| Enterobacter asburiae PDN3 | 0.85 | EX28DRAFT_3401 | | 3'(2'),5'-bisphosphate nucleotidase, bacterial | 0.81 | EX28DRAFT_0046 | | shikimate dehydrogenase | low | > 76 |
| Pantoea sp. MT58 | 0.85 | IAI47_02695 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.66 | IAI47_02315 | | shikimate dehydrogenase | — | — |
| Enterobacter sp. TBS_079 | 0.84 | MPMX20_00492 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.82 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | 0.43 | 67 |
| Klebsiella michiganensis M5al | 0.84 | BWI76_RS02735 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.81 | BWI76_RS25645 | | shikimate dehydrogenase | 0.70 | 36 |
| Erwinia tracheiphila SCR3 | 0.82 | LU632_RS02085 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.64 | LU632_RS22445 | aroE | shikimate dehydrogenase | low | > 74 |
| Rahnella sp. WP5 | 0.76 | EX31_RS08720 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.62 | EX31_RS15950 | | shikimate dehydrogenase | — | — |
| Pectobacterium carotovorum WPP14 | 0.76 | HER17_RS03955 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.62 | HER17_RS02250 | | shikimate dehydrogenase | 0.87 | 46 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS18320 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.60 | DZA65_RS20315 | | shikimate dehydrogenase | — | — |
| Dickeya dadantii 3937 | 0.74 | DDA3937_RS17180 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.61 | DDA3937_RS19100 | | shikimate dehydrogenase | — | — |
| Dickeya dianthicola 67-19 | 0.74 | HGI48_RS17235 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.61 | HGI48_RS19190 | | shikimate dehydrogenase | — | — |
| Serratia liquefaciens MT49 | 0.73 | IAI46_01745 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.66 | IAI46_23240 | | shikimate dehydrogenase | low | > 86 |
| Shewanella loihica PV-4 | 0.51 | Shew_1427 | | 3'(2'),5'-bisphosphate nucleotidase (RefSeq) | 0.47 | Shew_3727 | | shikimate 5-dehydrogenase (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.48 | Sama_2232 | | cysQ protein (RefSeq) | 0.43 | Sama_0052 | | shikimate dehydrogenase (RefSeq) | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_2344 | | 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) | 0.30 | B158DRAFT_0259 | | shikimate 5-dehydrogenase | low | > 40 |
| Shewanella sp. ANA-3 | 0.45 | Shewana3_2791 | | 3'(2'),5'-bisphosphate nucleotidase (RefSeq) | 0.48 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | low | > 73 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_10995 | cysQ | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.32 | OKGIIK_15365 | aroE | shikimate dehydrogenase | low | > 52 |
| Shewanella oneidensis MR-1 | 0.44 | SO1655 | cysQ-2 | cysQ protein (NCBI ptt file) | 0.48 | SO0040 | aroE | shikimate 5-dehydrogenase (NCBI ptt file) | 0.86 | 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.1562.1 | | 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) | 0.33 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_3885 | | 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) | 0.49 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_10075 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.49 | AO356_11315 | | shikimate dehydrogenase | 0.40 | 52 |
| Marinobacter adhaerens HP15 | 0.42 | HP15_2405 | | 3'(2'), 5'-bisphosphate nucleotidase | 0.41 | HP15_3750 | | shikimate dehydrogenase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS17065 | | 3'(2'),5'-bisphosphate nucleotidase | 0.16 | CA265_RS19745 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | — | — |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_01272 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.31 | MIT1002_00029 | | Shikimate dehydrogenase | — | — |
| Lysobacter sp. OAE881 | 0.42 | ABIE51_RS05275 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.31 | ABIE51_RS01815 | | shikimate dehydrogenase | low | > 62 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_04887 | | '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 | 0.50 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Pseudomonas putida KT2440 | 0.41 | PP_0261 | | adenosine-3'(2'),5'-bisphosphate nucleotidase | 0.45 | PP_0074 | | shikimate 5-dehydrogenase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_403 | | 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) | 0.48 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS01390 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.47 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas simiae WCS417 | 0.41 | PS417_01295 | | adenosine-3'(2'),5'-bisphosphate nucleotidase | 0.48 | PS417_00125 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS01390 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.47 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.40 | AO353_11850 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.49 | AO353_10670 | | shikimate dehydrogenase | 0.42 | 17 |
| Pseudomonas fluorescens FW300-N1B4 | 0.40 | Pf1N1B4_1668 | | 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) | 0.50 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 87 |
| Rhodanobacter denitrificans FW104-10B01 | 0.40 | LRK54_RS04130 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.33 | LRK54_RS08595 | | shikimate dehydrogenase | 0.57 | 10 |
| Azospirillum sp. SherDot2 | 0.40 | MPMX19_01084 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.21 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Rhodanobacter denitrificans MT42 | 0.40 | LRK55_RS03900 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.33 | LRK55_RS08360 | | shikimate dehydrogenase | low | > 63 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_4940 | | 3'(2'),5'-bisphosphate nucleotidase | 0.49 | Psyr_0025 | | shikimate dehydrogenase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_4940 | | 3'(2'),5'-bisphosphate nucleotidase | 0.49 | Psyr_0025 | | shikimate dehydrogenase | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.39 | ABZR86_RS10205 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.33 | ABZR86_RS14985 | | shikimate dehydrogenase | 0.84 | 11 |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_3960 | | 3'(2'),5'-bisphosphate nucleotidase, bacterial | 0.47 | Psest_0029 | | shikimate 5-dehydrogenase | — | — |
| Pseudomonas sp. S08-1 | 0.38 | OH686_14315 | | 3'(2'),5'-bisphosphate nucleotidase | 0.48 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.37 | CSW01_13735 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.49 | CSW01_00280 | | shikimate dehydrogenase | low | > 62 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.37 | Echvi_4407 | | 3'(2'),5'-bisphosphate nucleotidase, bacterial | 0.15 | Echvi_1145 | | Shikimate 5-dehydrogenase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.36 | Dshi_3574 | | 3'(2'),5'-bisphosphate nucleotidase (RefSeq) | 0.25 | Dshi_3450 | | shikimate 5-dehydrogenase (RefSeq) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.36 | HMPREF1058_RS02960 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.16 | HMPREF1058_RS16750 | | shikimate dehydrogenase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.36 | ABI39_RS02275 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.16 | ABI39_RS12665 | | shikimate dehydrogenase | low | > 72 |
| Phaeobacter inhibens DSM 17395 | 0.35 | PGA1_c34500 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.23 | PGA1_c35150 | | shikimate dehydrogenase AroE | — | — |
| Sinorhizobium meliloti 1021 | 0.35 | SMc01952 | | transmembrane protein | 0.23 | SMc02791 | | shikimate 5-dehydrogenase | — | — |
| Rhodospirillum rubrum S1H | 0.34 | Rru_A0445 | | 3(2),5 -bisphosphate nucleotidase (NCBI) | 0.22 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | — | — |
| Agrobacterium fabrum C58 | 0.34 | Atu2428 | | exopolysaccharide production protein PssB | 0.24 | Atu0003 | | shikimate 5-dehydrogenase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.34 | BT0411 | | CysQ, sulfite synthesis pathway protein (NCBI ptt file) | 0.17 | BT4215 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.33 | BACOVA_01765 | | hypothetical protein | 0.17 | BACOVA_05065 | | putative shikimate dehydrogenase | — | — |
| Bacteroides stercoris CC31F | 0.32 | HMPREF1181_RS04320 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.17 | HMPREF1181_RS06320 | | shikimate dehydrogenase | low | > 56 |
| Acinetobacter radioresistens SK82 | 0.30 | MPMX26_01312 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.40 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_008350 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.22 | TX73_022410 | | shikimate dehydrogenase | — | — |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_03582 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.19 | CCNA_00003 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_03582 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.19 | CCNA_00003 | | shikimate 5-dehydrogenase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS15260 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.18 | A4249_RS13660 | | shikimate dehydrogenase | — | — |
| Bosea sp. OAE506 | 0.21 | ABIE41_RS11005 | | 3'(2'),5'-bisphosphate nucleotidase CysQ | 0.19 | ABIE41_RS04650 | | shikimate dehydrogenase | — | — |
Not shown: 7 genomes with orthologs for b4214 only; 19 genomes with orthologs for b3281 only