| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b2038 | rfbC | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | 1.0 | b2512 | yfgL | protein assembly complex, lipoprotein component (NCBI) | 0.25 | 18 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.63 | GFF3890 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.90 | GFF2409 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | low | > 78 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_01663 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 1.00 | OHPLBJKB_01197 | | Outer membrane protein assembly factor BamB | low | > 73 |
| Ralstonia solanacearum PSI07 | 0.57 | RPSI07_RS20600 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | RPSI07_RS18085 | | outer membrane protein assembly factor BamB | — | — |
| Ralstonia solanacearum GMI1000 | 0.57 | RS_RS03445 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | RS_RS06100 | | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas simiae WCS417 | 0.57 | PS417_01320 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | PS417_23130 | | dehydrogenase | — | — |
| Pseudomonas sp. RS175 | 0.56 | PFR28_04892 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | PFR28_00300 | | Outer membrane protein assembly factor BamB | — | — |
| Ralstonia solanacearum UW163 | 0.56 | UW163_RS00905 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | UW163_RS12755 | | outer membrane protein assembly factor BamB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.56 | RALBFv3_RS12660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | RALBFv3_RS15290 | | outer membrane protein assembly factor BamB | — | — |
| Escherichia coli BL21 | 0.56 | ECD_01944 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) | 1.00 | ECD_02404 | | BamABCDE complex OM biogenesis lipoprotein | — | — |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_03120 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.99 | HEPCGN_20860 | bamB | outer membrane protein assembly factor BamB | — | — |
| Acidovorax sp. GW101-3H11 | 0.55 | Ac3H11_1883 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.13 | Ac3H11_1797 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_1664 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.23 | Pf1N1B4_851 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_11875 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.24 | AO353_15905 | | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_399 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.23 | PfGW456L13_4859 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Rahnella sp. WP5 | 0.55 | EX31_RS11510 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.77 | EX31_RS20495 | | outer membrane protein assembly factor BamB | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_10050 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | AO356_06575 | | outer membrane protein assembly factor BamB | — | — |
| Variovorax sp. SCN45 | 0.54 | GFF6879 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.13 | GFF998 | | Outer membrane beta-barrel assembly protein BamB | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | Psyr_1251 | | quinoprotein | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | Psyr_1251 | | quinoprotein | — | — |
| Pseudomonas putida KT2440 | 0.54 | PP_1782 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | PP_0856 | | conserved lipoprotein of unknown function | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_4264 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.24 | Psest_1265 | | outer membrane assembly lipoprotein YfgL | — | — |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS19055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.88 | BWI76_RS21070 | | outer membrane protein assembly factor BamB | low | > 92 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.54 | GFF1840 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.16 | GFF4860 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Escherichia fergusonii Becca | 0.54 | EFB2_01816 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.99 | EFB2_01378 | | Outer membrane protein assembly factor BamB | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.54 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | PFLU_RS24785 | | outer membrane protein assembly factor BamB | — | — |
| Variovorax sp. OAS795 | 0.54 | ABID97_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.14 | ABID97_RS14240 | | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_3880 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.23 | Pf6N2E2_3175 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Pseudomonas fluorescens SBW25 | 0.54 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | PFLU_RS24785 | | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas sp. S08-1 | 0.53 | OH686_14370 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | OH686_17545 | | outer membrane assembly lipoprotein YfgL | — | — |
| Shewanella loihica PV-4 | 0.53 | Shew_1404 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.37 | Shew_1293 | | outer membrane protein assembly complex subunit YfgL (RefSeq) | — | — |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_00453 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.18 | MPMX26_00432 | | Outer membrane protein assembly factor BamB | low | > 36 |
| Dechlorosoma suillum PS | 0.52 | Dsui_1951 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.24 | Dsui_3139 | | outer membrane assembly lipoprotein YfgL | — | — |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS08865 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.79 | LU632_RS17785 | bamB | outer membrane protein assembly factor BamB | low | > 74 |
| Paraburkholderia sabiae LMG 24235 | 0.52 | QEN71_RS25745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | QEN71_RS05990 | | outer membrane protein assembly factor BamB | — | — |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_1382 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.36 | Shewana3_1232 | | outer membrane protein assembly complex subunit YfgL (RefSeq) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_04824 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.24 | H281DRAFT_00519 | | Beta-barrel assembly machine subunit BamB | — | — |
| Burkholderia phytofirmans PsJN | 0.51 | BPHYT_RS04275 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | BPHYT_RS12565 | | pyrrolo-quinoline quinone | — | — |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_03559 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.34 | MIT1002_02785 | | Outer membrane protein assembly factor BamB precursor | — | — |
| Paraburkholderia graminis OAS925 | 0.51 | ABIE53_001139 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.24 | ABIE53_002739 | | outer membrane protein assembly factor BamB | — | — |
| Dickeya dadantii 3937 | 0.51 | DDA3937_RS06745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.75 | DDA3937_RS15450 | | outer membrane protein assembly factor BamB | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.51 | RR42_RS15830 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | RR42_RS13125 | | pyrrolo-quinoline quinone | — | — |
| Enterobacter asburiae PDN3 | 0.50 | EX28DRAFT_0520 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.87 | EX28DRAFT_0132 | | outer membrane assembly lipoprotein YfgL | — | — |
| Ralstonia sp. UNC404CL21Col | 0.50 | ABZR87_RS08660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.22 | ABZR87_RS10930 | | outer membrane protein assembly factor BamB | low | > 80 |
| Dickeya dianthicola 67-19 | 0.50 | HGI48_RS06765 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.75 | HGI48_RS15560 | | outer membrane protein assembly factor BamB | low | > 71 |
| Dickeya dianthicola ME23 | 0.50 | DZA65_RS07120 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.75 | DZA65_RS16635 | | outer membrane protein assembly factor BamB | low | > 75 |
| Shewanella oneidensis MR-1 | 0.47 | SO3160 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) | 0.35 | SO3309 | | PQQ enzyme repeat domain protein (NCBI ptt file) | — | — |
| Marinobacter adhaerens HP15 | 0.47 | HP15_p187g51 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.25 | HP15_1496 | | pyrrolo-quinoline quinone | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.46 | ABZR86_RS18725 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.31 | ABZR86_RS05435 | | outer membrane protein assembly factor BamB | — | — |
| Shewanella amazonensis SB2B | 0.46 | Sama_2237 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.36 | Sama_2362 | | outer membrane protein assembly complex subunit YfgL (RefSeq) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_01165 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.29 | OKGIIK_07120 | bamB | outer membrane protein assembly factor BamB | — | — |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS05430 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.28 | LRK55_RS18085 | | outer membrane protein assembly factor BamB | — | — |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS02485 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | ABCV34_RS02635 | | outer membrane protein assembly factor BamB | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.28 | LRK54_RS00090 | | outer membrane protein assembly factor BamB | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.4484.1 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.25 | Xcc-8004.2733.1 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS22055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.25 | HSERO_RS14785 | | serine/threonine protein kinase | — | — |
| Lysobacter sp. OAE881 | 0.44 | ABIE51_RS15610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.24 | ABIE51_RS09435 | | outer membrane protein assembly factor BamB | — | — |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_65p00250 | | dTDP-4-dehydrorhamnose 3,5-epimerase RfbC | 0.13 | PGA1_c19000 | | putative quinoprotein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.37 | Dshi_4114 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.10 | Dshi_1165 | | Pyrrolo-quinoline quinone (RefSeq) | — | — |
Not shown: 26 genomes with orthologs for b2038 only; 14 genomes with orthologs for b2512 only