| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0416 | | transcriptional regulator, RpiR family | insig. | 100 | 100 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0416 | | transcriptional regulator, RpiR family | insig. | 100 | 100 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_05895 | | RpiR family transcriptional regulator | insig. | 80 | 100 |
| o | Pseudomonas sp. DMC3 | GFF4937 | | HTH-type transcriptional regulator HexR | insig. | 79 | 100 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_5134 | | Transcriptional regulator, RpiR family | insig. | 78 | 100 |
| o | Pseudomonas sp. RS175 | PFR28_00029 | | HTH-type transcriptional regulator HexR | insig. | 77 | 100 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3440 | | Transcriptional regulator, RpiR family | sig. | 77 | 100 |
| o | Pseudomonas orientalis W4I3 | QF045_RS25860 | | MurR/RpiR family transcriptional regulator | insig. | 77 | 100 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_07785 | | RpiR family transcriptional regulator | insig. | 77 | 100 |
| o | Pseudomonas simiae WCS417 | PS417_23600 | | RpiR family transcriptional regulator | insig. | 78 | 100 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS25415 | | MurR/RpiR family transcriptional regulator | insig. | 77 | 100 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS25415 | | MurR/RpiR family transcriptional regulator | insig. | 77 | 100 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04871 | | HTH-type transcriptional regulator HexR | cofit | 77 | 100 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS18180 | | MurR/RpiR family transcriptional regulator | insig. | 47 | 100 |
| o | Ralstonia solanacearum UW163 | UW163_RS20950 | | MurR/RpiR family transcriptional regulator | insig. | 47 | 100 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS19110 | | MurR/RpiR family transcriptional regulator | sig. | 47 | 100 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS05455 | | MurR/RpiR family transcriptional regulator | insig. | 47 | 100 |
| o | Ralstonia solanacearum GMI1000 | RS_RS22855 | | MurR/RpiR family transcriptional regulator | insig. | 47 | 100 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS03120 | | transcriptional regulator | insig. | 45 | 100 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS01955 | | MurR/RpiR family transcriptional regulator | cofit | 45 | 100 |
| o | Paraburkholderia graminis OAS925 | ABIE53_000756 | | RpiR family carbohydrate utilization transcriptional regulator | sig. | 46 | 100 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01892 | | transcriptional regulator, RpiR family | insig. | 45 | 100 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS08725 | | transcriptional regulator | sig. | 46 | 100 |
| o | Serratia liquefaciens MT49 | IAI46_02300 | | MurR/RpiR family transcriptional regulator | insig. | 43 | 100 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS28850 | | transcriptional regulator | insig. | 43 | 100 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_12185 | | MurR/RpiR family transcriptional regulator | insig. | 42 | 100 |
| o | Klebsiella michiganensis M5al | BWI76_RS03915 | | MurR/RpiR family transcriptional regulator | insig. | 42 | 100 |
| | Serratia liquefaciens MT49 | IAI46_09240 | | SIS domain-containing protein | insig. | 44 | 84 |
| o | Rhizobium sp. OAE497 | ABIE40_RS21410 | | MurR/RpiR family transcriptional regulator | insig. | 38 | 100 |
| o | Sinorhizobium meliloti 1021 | SM_b21158 | | transcriptional regulator | sig. | 37 | 100 |
| o | Agrobacterium fabrum C58 | Atu2598 | | transcriptional regulator, RpiR family | strong | 37 | 100 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS23730 | | MurR/RpiR family transcriptional regulator | strong | 34 | 100 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS23730 | | MurR/RpiR family transcriptional regulator | strong | 34 | 100 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04559 | | HTH-type transcriptional regulator HexR | cofit | 34 | 100 |
| | Pseudomonas simiae WCS417 | PS417_22115 | | transcriptional regulator | strong | 34 | 100 |
| | Pseudomonas orientalis W4I3 | QF045_RS24250 | | MurR/RpiR family transcriptional regulator | insig. | 34 | 100 |
| | Marinobacter adhaerens HP15 | HP15_2180 | | transcriptional regulator, RpiR family protein | strong | 33 | 96 |
| | Klebsiella michiganensis M5al | BWI76_RS02940 | | RpiR family transcriptional regulator | insig. | 38 | 78 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS08655 | | SIS domain-containing protein | sig. | 35 | 96 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1119 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | strong | 34 | 96 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1119 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | insig. | 34 | 96 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_590 | | Phosphogluconate repressor HexR, RpiR family | strong | 34 | 100 |
| | Pseudomonas sp. DMC3 | GFF5141 | | HTH-type transcriptional regulator HexR | cofit | 34 | 100 |
| | Pseudomonas sp. S08-1 | OH686_02440 | | Phosphogluconate repressor HexR, RpiR family | strong | 33 | 98 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1900 | | Phosphogluconate repressor HexR, RpiR family | sig. | 34 | 100 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_05165 | | transcriptional regulator | strong | 34 | 100 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2886 | | Phosphogluconate repressor HexR, RpiR family | strong | 34 | 100 |
| | Pseudomonas sp. RS175 | PFR28_00572 | | HTH-type transcriptional regulator HexR | strong | 33 | 100 |
| | Pectobacterium carotovorum WPP14 | HER17_RS11785 | | MurR/RpiR family transcriptional regulator | cofit | 31 | 98 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_05825 | | transcriptional regulator HexR | cofit | 30 | 99 |
| | Klebsiella michiganensis M5al | BWI76_RS18110 | | transcriptional regulator HexR | sig. | 31 | 97 |
| | Pseudomonas segetis P6 | MPMX49_02832 | | HTH-type transcriptional regulator HexR | sig. | 34 | 98 |
| | Pseudomonas stutzeri RCH2 | Psest_0851 | | Transcriptional regulators | strong | 32 | 99 |
| | Shewanella sp. ANA-3 | Shewana3_2152 | | DNA-binding transcriptional regulator HexR (RefSeq) | strong | 30 | 99 |
| | Pseudomonas sp. SVBP6 | COO64_RS04585 | hexR | DNA-binding transcriptional regulator HexR | insig. | 32 | 96 |
| | Pseudomonas putida KT2440 | PP_1021 | | DNA-binding transcriptional regulator | strong | 32 | 96 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_03365 | | transcriptional regulator | strong | 34 | 100 |
| | Shewanella amazonensis SB2B | Sama_1813 | | DNA-binding transcriptional regulator HexR (RefSeq) | strong | 30 | 98 |
| | Shewanella oneidensis MR-1 | SO2490 | | transcriptional regulator, RpiR family (NCBI ptt file) | strong | 30 | 99 |
| | Escherichia fergusonii Becca | EFB2_02089 | | HTH-type transcriptional regulator HexR | insig. | 30 | 100 |
| | Escherichia coli ECOR27 | NOLOHH_16840 | hexR | DNA-binding transcriptional regulator HexR | insig. | 30 | 100 |
| | Escherichia coli ECOR38 | HEPCGN_04730 | hexR | DNA-binding transcriptional regulator HexR | insig. | 30 | 100 |
| | Escherichia coli ECRC100 | OKFHMN_26325 | hexR | DNA-binding transcriptional regulator HexR | cofit | 30 | 100 |
| | Escherichia coli ECRC101 | MCAODC_19080 | hexR | DNA-binding transcriptional regulator HexR | sig. | 30 | 100 |
| | Escherichia coli ECRC102 | NIAGMN_01735 | hexR | DNA-binding transcriptional regulator HexR | insig. | 30 | 100 |
| | Escherichia coli ECRC62 | BNILDI_15635 | hexR | DNA-binding transcriptional regulator HexR | insig. | 30 | 100 |
| | Escherichia coli ECRC98 | JDDGAC_00900 | hexR | DNA-binding transcriptional regulator HexR | insig. | 30 | 100 |
| | Escherichia coli ECRC99 | KEDOAH_01780 | hexR | DNA-binding transcriptional regulator HexR | no data | 30 | 100 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS10325 | | DNA-binding transcriptional regulator HexR | cofit | 30 | 100 |
| | Pseudomonas sp. BP01 | JOY50_RS11445 | hexR | DNA-binding transcriptional regulator HexR | insig. | 33 | 96 |
| | Serratia liquefaciens MT49 | IAI46_14580 | | MurR/RpiR family transcriptional regulator | insig. | 31 | 97 |
| | Shewanella loihica PV-4 | Shew_2049 | | DNA-binding transcriptional regulator HexR (RefSeq) | strong | 31 | 97 |
| | Escherichia coli BL21 | ECD_01824 | | putative DNA-binding transcriptional regulator | cofit | 30 | 100 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01875 | | HTH-type transcriptional regulator HexR | insig. | 30 | 100 |
| | Escherichia coli BW25113 | b1853 | yebK | predicted DNA-binding transcriptional regulator (NCBI) | strong | 30 | 100 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS06120 | | transcriptional regulator | sig. | 35 | 95 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS01015 | | MurR/RpiR family transcriptional regulator | strong | 34 | 95 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_16180 | | HTH-type transcriptional regulator HexR | strong | 34 | 95 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS34520 | | MurR/RpiR family transcriptional regulator | strong | 34 | 95 |
| | Dickeya dadantii 3937 | DDA3937_RS10130 | | MurR/RpiR family transcriptional regulator | cofit | 31 | 97 |
| | Dickeya dianthicola 67-19 | HGI48_RS10160 | | MurR/RpiR family transcriptional regulator | cofit | 31 | 97 |
| | Dickeya dianthicola ME23 | DZA65_RS10575 | | MurR/RpiR family transcriptional regulator | insig. | 31 | 97 |
| | Rahnella sp. WP5 | EX31_RS10635 | | MurR/RpiR family transcriptional regulator | sig. | 31 | 97 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_11410 | | RpiR family transcriptional regulator | insig. | 37 | 84 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS25475 | hexR;go_function=DNA-binding | transcriptional regulator HexR | sig. | 33 | 97 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_26230 | | transcriptional regulator | strong | 33 | 97 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS57925 | hexR;go_function=DNA-binding | transcriptional regulator HexR | strong | 33 | 97 |
| | Alteromonas macleodii MIT1002 | MIT1002_02408 | | putative HTH-type transcriptional regulator YbbH | no data | 31 | 97 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30190 | | transcriptional regulator | insig. | 33 | 95 |
| | Pantoea sp. MT58 | IAI47_08490 | | MurR/RpiR family transcriptional regulator | insig. | 31 | 99 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_25375 | | transcriptional regulator HexR | insig. | 30 | 97 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0703 | | transcriptional regulator, RpiR family | insig. | 30 | 100 |
| | Enterobacter sp. TBS_079 | MPMX20_02758 | | HTH-type transcriptional regulator HexR | strong | 30 | 100 |
| | Pseudomonas segetis P6 | MPMX49_00177 | | HTH-type transcriptional regulator HexR | sig. | 32 | 97 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1364 | | Phosphogluconate repressor HexR, RpiR family | insig. | 34 | 88 |
| | Pseudomonas sp. S08-1 | OH686_13095 | | Transcriptional regulator, RpiR family | cofit | 31 | 97 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1632 | | Phosphogluconate repressor HexR, RpiR family | insig. | 29 | 100 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS02370 | | transcriptional regulator HexR | cofit | 32 | 96 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS16740 | | transcriptional regulator | strong | 30 | 96 |
| | Azospirillum sp. SherDot2 | MPMX19_04844 | | HTH-type transcriptional regulator HexR | insig. | 32 | 95 |