| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_02332 | | HTH-type transcriptional regulator HdfR | no data | 100 | 100 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS03665 | | LysR family transcriptional regulator | sig. | 89 | 100 |
| | Azospirillum brasilense Sp245 | AZOBR_RS23830 | | LysR family transcriptional regulator | sig. | 72 | 100 |
| o | Magnetospirillum magneticum AMB-1 | AMB_RS03405 | | LysR family transcriptional regulator | insig. | 68 | 99 |
| o | Rhodospirillum rubrum S1H | Rru_A2899 | | Transcriptional Regulator, LysR family (NCBI) | strong | 62 | 99 |
| o | Xanthobacter sp. DMC5 | GFF4685 | | HTH-type transcriptional regulator HdfR | insig. | 58 | 98 |
| o | Rhodopseudomonas palustris CGA009 | TX73_021115 | | LysR family transcriptional regulator | strong | 55 | 100 |
| o | Bosea sp. OAE506 | ABIE41_RS11880 | | LysR family transcriptional regulator | no data | 52 | 98 |
| o | Rhizobium sp. OAE497 | ABIE40_RS12870 | | LysR family transcriptional regulator VtlR | no data | 50 | 100 |
| o | Sinorhizobium meliloti 1021 | SMc01225 | | transcriptional regulator | no data | 52 | 100 |
| o | Agrobacterium fabrum C58 | Atu2186 | | transcriptional regulator, LysR family | no data | 49 | 100 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_1763 | | transcriptional regulator, LysR family (RefSeq) | no data | 50 | 98 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c17090 | | HTH-type transcriptional regulator, LysR family | no data | 47 | 98 |
| | Shewanella oneidensis MR-1 | SO2053 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 33 | 98 |
| | Shewanella sp. ANA-3 | Shewana3_3800 | | LysR family transcriptional regulator (RefSeq) | insig. | 34 | 99 |
| | Shewanella sp. ANA-3 | Shewana3_1836 | | LysR family transcriptional regulator (RefSeq) | insig. | 33 | 98 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3482.1 | | transcriptional regulator | insig. | 32 | 98 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS14735 | | LysR family transcripitonal regulator | insig. | 33 | 98 |
| | Shewanella oneidensis MR-1 | SO0369 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 33 | 98 |
| | Serratia liquefaciens MT49 | IAI46_16195 | | LysR family transcriptional regulator | insig. | 32 | 98 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS16150 | | LysR family transcriptional regulator | insig. | 31 | 98 |
| | Pseudomonas segetis P6 | MPMX49_03087 | | HTH-type transcriptional regulator DmlR | insig. | 31 | 99 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS04260 | | LysR family transcriptional regulator | sig. | 32 | 97 |
| | Ralstonia solanacearum UW163 | UW163_RS09410 | | LysR family transcriptional regulator | insig. | 32 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_05420 | | Glycine cleavage system transcriptional activator | insig. | 30 | 98 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS09800 | | LysR family transcriptional regulator | cofit | 33 | 99 |
| | Pseudomonas sp. S08-1 | OH686_18575 | | Transcriptional regulator, LysR family | insig. | 32 | 96 |
| | Dickeya dianthicola ME23 | DZA65_RS14630 | | LysR family transcriptional regulator | insig. | 31 | 99 |
| | Pectobacterium carotovorum WPP14 | HER17_RS06865 | | LysR family transcriptional regulator | insig. | 33 | 98 |
| | Lysobacter sp. OAE881 | ABIE51_RS12770 | | LysR family transcriptional regulator | insig. | 32 | 100 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21915 | | LysR family transcriptional regulator | strong | 33 | 99 |
| | Pseudomonas sp. S08-1 | OH686_04560 | | Transcriptional regulator, LysR family | cofit | 30 | 99 |
| | Azospirillum sp. SherDot2 | MPMX19_05002 | | HTH-type transcriptional regulator DmlR | insig. | 33 | 99 |
| | Shewanella oneidensis MR-1 | SOA0165 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 30 | 97 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS11395 | | LysR family transcriptional regulator | insig. | 32 | 99 |
| | Marinobacter adhaerens HP15 | HP15_936 | | transcriptional regulator, LysR family protein | insig. | 32 | 96 |
| | Variovorax sp. SCN45 | GFF672 | | Transcriptional regulator, LysR family | insig. | 31 | 99 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS11800 | | LysR family transcriptional regulator | insig. | 31 | 99 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS11800 | | LysR family transcriptional regulator | insig. | 31 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02887 | | transcriptional regulator, LysR family | no data | 31 | 98 |
| | Pseudomonas putida KT2440 | PP_2961 | | Transcriptional regulator, LysR family | insig. | 31 | 98 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 32 | 98 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 32 | 98 |
| | Rhizobium sp. OAE497 | ABIE40_RS28275 | | LysR family transcriptional regulator | insig. | 32 | 99 |
| | Serratia liquefaciens MT49 | IAI46_17620 | | LysR family transcriptional regulator | insig. | 32 | 95 |
| | Pseudomonas simiae WCS417 | PS417_11205 | | LysR family transcriptional regulator | no data | 30 | 99 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS04830 | | LysR family transcriptional regulator | insig. | 33 | 96 |
| | Paraburkholderia graminis OAS925 | ABIE53_005764 | | DNA-binding transcriptional LysR family regulator | insig. | 31 | 98 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS11985 | | LysR family transcriptional regulator | insig. | 33 | 97 |
| | Rahnella sp. WP5 | EX31_RS10405 | | LysR family transcriptional regulator | insig. | 32 | 98 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2951 | | transcriptional regulator, LysR family | insig. | 30 | 97 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2951 | | transcriptional regulator, LysR family | insig. | 30 | 97 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04875 | | HTH-type transcriptional regulator DmlR | insig. | 32 | 98 |
| | Caulobacter crescentus NA1000 | CCNA_02437 | | LysR-family transcriptional regulator | cofit | 31 | 99 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_02437 | | LysR-family transcriptional regulator | cofit | 31 | 99 |
| | Pseudomonas sp. S08-1 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 30 | 99 |
| | Shewanella loihica PV-4 | Shew_1539 | | LysR family transcriptional regulator (RefSeq) | insig. | 30 | 97 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3107 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 31 | 99 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02543 | | HTH-type transcriptional regulator DmlR | insig. | 31 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06618 | | transcriptional regulator, LysR family | no data | 30 | 98 |
| | Pseudomonas sp. RS175 | PFR28_00251 | | HTH-type transcriptional regulator DmlR | insig. | 30 | 99 |
| | Pantoea sp. MT58 | IAI47_03165 | | LysR family transcriptional regulator | insig. | 33 | 97 |
| | Rhizobium sp. OAE497 | ABIE40_RS03325 | | LysR family transcriptional regulator | strong | 32 | 99 |
| | Pseudomonas sp. RS175 | PFR28_04746 | | HTH-type transcriptional regulator DmlR | insig. | 31 | 98 |
| | Klebsiella michiganensis M5al | BWI76_RS05415 | | LysR family transcriptional regulator | sig. | 32 | 99 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3445 | | Transcriptional regulator, LysR family | insig. | 32 | 98 |
| | Paraburkholderia graminis OAS925 | ABIE53_005907 | | DNA-binding transcriptional LysR family regulator | insig. | 30 | 98 |
| | Pseudomonas simiae WCS417 | PS417_23625 | | LysR family transcriptional regulator | insig. | 32 | 98 |
| | Pseudomonas sp. DMC3 | GFF2076 | | HTH-type transcriptional regulator DmlR | insig. | 31 | 98 |
| | Pseudomonas orientalis W4I3 | QF045_RS09170 | | LysR substrate-binding domain-containing protein | insig. | 31 | 99 |
| | Shewanella amazonensis SB2B | Sama_0005 | | LysR, substrate-binding (RefSeq) | insig. | 30 | 98 |
| | Pantoea sp. MT58 | IAI47_10580 | | LysR family transcriptional regulator | insig. | 31 | 95 |
| | Azospirillum brasilense Sp245 | AZOBR_RS16520 | | LysR family transcriptional regulator | insig. | 31 | 82 |
| | Ralstonia solanacearum GMI1000 | RS_RS11675 | | LysR family transcriptional regulator | insig. | 32 | 95 |
| | Methylophilus sp. DMC18 | GFF2123 | | HTH-type transcriptional regulator PgrR | insig. | 31 | 97 |
| | Rhodospirillum rubrum S1H | Rru_A2257 | | Transcriptional Regulator, LysR family (NCBI) | strong | 30 | 98 |
| | Serratia liquefaciens MT49 | IAI46_16295 | | LysR family transcriptional regulator | insig. | 34 | 80 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4039 | | LysR family transcriptional regulator YafC | insig. | 32 | 99 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS04955 | | LysR family transcriptional regulator | insig. | 31 | 97 |
| | Paraburkholderia graminis OAS925 | ABIE53_001281 | | LysR family transcriptional regulator for bpeEF and oprC | sig. | 31 | 99 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c07040 | | transcriptional regulator, lysR family | insig. | 30 | 97 |
| | Sinorhizobium meliloti 1021 | SMc03122 | | transcriptional regulator | insig. | 29 | 99 |
| | Pseudomonas segetis P6 | MPMX49_03437 | | HTH-type transcriptional regulator DmlR | insig. | 29 | 98 |
| | Rhizobium sp. OAE497 | ABIE40_RS04915 | | LysR family transcriptional regulator | insig. | 35 | 96 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS25310 | | LysR family transcriptional regulator | insig. | 33 | 99 |
| | Serratia liquefaciens MT49 | IAI46_04115 | | LysR family transcriptional regulator | insig. | 32 | 99 |
| | Alteromonas macleodii MIT1002 | MIT1002_01208 | | D-malate degradation protein R | insig. | 32 | 97 |
| | Rhizobium sp. OAE497 | ABIE40_RS03475 | | LysR family transcriptional regulator | insig. | 31 | 100 |
| | Pseudomonas sp. SVBP6 | COO64_RS19755 | | LysR substrate-binding domain-containing protein | insig. | 31 | 99 |
| | Sinorhizobium meliloti 1021 | SMc00780 | | transcriptional regulator | strong | 31 | 98 |
| | Pseudomonas simiae WCS417 | PS417_06325 | | LysR family transcriptional regulator | strong | 31 | 99 |
| | Rahnella sp. WP5 | EX31_RS16730 | | LysR family transcriptional regulator | insig. | 30 | 98 |
| | Agrobacterium fabrum C58 | Atu0207 | | transcriptional regulator, LysR family | strong | 30 | 99 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS25475 | | LysR family transcriptional regulator | no data | 29 | 97 |
| | Pseudomonas orientalis W4I3 | QF045_RS25885 | | LysR family transcriptional regulator | insig. | 32 | 98 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_07805 | | LysR family transcriptional regulator | insig. | 32 | 98 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_10765 | | LysR family transcriptional regulator | insig. | 31 | 97 |
| | Bosea sp. OAE506 | ABIE41_RS19655 | | LysR family transcriptional regulator | insig. | 31 | 99 |
| | Pseudomonas sp. DMC3 | GFF2757 | | HTH-type transcriptional regulator DmlR | insig. | 31 | 98 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0123 | | transcriptional regulator, LysR family (RefSeq) | sig. | 29 | 97 |