| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_01858 | | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP | insig. | 100 | 100 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS14200 | | chemotaxis protein CheY | strong | 76 | 100 |
| o | Xanthobacter sp. DMC5 | GFF1990 | | Sensor histidine kinase RcsC | insig. | 46 | 94 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1083 | phoB | phosphate regulon transcriptional regulator PhoB (TIGR) | no data | 47 | 99 |
| o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_00095 | | response regulator | insig. | 45 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS14285 | | transcriptional regulator | strong | 49 | 88 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS08970 | | phosphate regulon transcriptional regulator PhoB | no data | 44 | 89 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1538 | | two component transcriptional regulator, winged helix family (RefSeq) | no data | 46 | 90 |
| | Azospirillum brasilense Sp245 | AZOBR_RS01105 | | PhoB family transcriptional regulator | insig. | 44 | 95 |
| o | Cellulophaga baltica 18 | M666_RS00600 | | response regulator | insig. | 41 | 88 |
| | Alteromonas macleodii MIT1002 | MIT1002_00763 | | Cyclic di-GMP phosphodiesterase response regulator RpfG | insig. | 46 | 91 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS09200 | | two-component system response regulator | cofit | 48 | 95 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS06935 | | phosphate regulon transcriptional regulatory protein PhoB | insig. | 45 | 88 |
| | Azospirillum sp. SherDot2 | MPMX19_02587 | | Phosphate regulon transcriptional regulatory protein PhoB | cofit | 45 | 89 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS14470 | | phosphate regulon transcriptional regulator PhoB | insig. | 47 | 89 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03092 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | cofit | 46 | 93 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3644 | | Pole remodelling regulatory diguanylate cyclase | insig. | 48 | 93 |
| | Variovorax sp. SCN45 | GFF1097 | | Phosphate regulon transcriptional regulatory protein PhoB (SphR) | insig. | 44 | 88 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS03105 | | response regulator transcription factor | strong | 42 | 87 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS03320 | | EAL domain-containing protein | insig. | 41 | 93 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS02930 | | response regulator | insig. | 44 | 86 |
| | Rhodospirillum rubrum S1H | Rru_A0603 | | Two component Transcriptional regulator, Winged helix family (NCBI) | cofit | 44 | 89 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1406 | | response regulator receiver protein (RefSeq) | insig. | 38 | 89 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS09195 | | hybrid sensor histidine kinase/response regulator | insig. | 44 | 93 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1453 | rpaB | two component transcriptional regulator, winged helix family | no data | 49 | 88 |
| | Xanthobacter sp. DMC5 | GFF2342 | | Phosphate regulon transcriptional regulatory protein PhoB | no data | 46 | 86 |
| | Pseudomonas sp. BP01 | JOY50_RS11400 | gltR | two-component system response regulator GltR | insig. | 43 | 95 |
| | Caulobacter crescentus NA1000 | CCNA_00296 | | phosphate regulon response regulator PhoB | strong | 44 | 89 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00296 | | phosphate regulon response regulator PhoB | cofit | 44 | 89 |
| | Acinetobacter radioresistens SK82 | MPMX26_02509 | | Sensor histidine kinase RcsC | cofit | 42 | 85 |
| | Azospirillum sp. SherDot2 | MPMX19_01958 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 44 | 85 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS20605 | | response regulator | insig. | 44 | 92 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS06810 | | response regulator | insig. | 44 | 92 |
| | Pseudomonas putida KT2440 | PP_1012 | | DNA-binding response regulator | strong | 42 | 97 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS09305 | | two-component system response regulator | insig. | 42 | 95 |
| | Variovorax sp. OAS795 | ABID97_RS14620 | | phosphate regulon transcriptional regulator PhoB | insig. | 43 | 88 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0095 | rpaA | two component transcriptional regulator, winged helix family | strong | 43 | 89 |
| | Dechlorosoma suillum PS | Dsui_0777 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | cofit | 47 | 94 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4235 | | Phosphate regulon transcriptional regulatory protein PhoB (SphR) | insig. | 46 | 87 |
| | Pseudomonas segetis P6 | ACVTMO_RS19850 | | HD domain-containing phosphohydrolase | insig. | 45 | 93 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c15730 | | phosphate regulon transcriptional regulatory protein PhoB | strong | 45 | 90 |
| | Agrobacterium fabrum C58 | Atu0425 | | two component response regulator | no data | 44 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_02025 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 43 | 92 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS11370 | | response regulator transcription factor | no data | 47 | 88 |
| | Rhodopseudomonas palustris CGA009 | TX73_024820 | | phosphate regulon transcriptional regulator PhoB | insig. | 44 | 89 |
| | Sinorhizobium meliloti 1021 | SMc02140 | | phosphate regulon transcriptional regulatory protein | strong | 44 | 89 |
| | Shewanella amazonensis SB2B | Sama_3111 | | response regulator receiver protein (RefSeq) | insig. | 44 | 93 |
| | Rhizobium sp. OAE497 | ABIE40_RS02310 | | phosphate regulon transcriptional regulator PhoB | insig. | 44 | 89 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_461 | | Phosphate regulon transcriptional regulatory protein PhoB (SphR) | cofit | 43 | 87 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0882 | | two component transcriptional regulator, winged helix family (RefSeq) | strong | 46 | 88 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS15245 | | response regulator | insig. | 43 | 91 |
| | Acinetobacter radioresistens SK82 | MPMX26_02513 | | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP | strong | 35 | 89 |
| | Azospirillum brasilense Sp245 | AZOBR_RS00555 | | chemotaxis protein CheY | insig. | 45 | 87 |
| | Marinobacter adhaerens HP15 | HP15_2961 | | two component transcriptional regulator, winged helix family | insig. | 45 | 88 |
| | Alteromonas macleodii MIT1002 | MIT1002_01768 | | Cyclic di-GMP phosphodiesterase response regulator RpfG | insig. | 45 | 92 |
| o | Acinetobacter baumannii LAC-4 | RR41_RS03405 | | twitching motility response regulator PilG | insig. | 35 | 88 |
| | Alteromonas macleodii MIT1002 | MIT1002_00477 | | Response regulator ArlR | insig. | 44 | 93 |
| | Shewanella amazonensis SB2B | Sama_1104 | | response regulator receiver protein (RefSeq) | insig. | 40 | 96 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS23070 | | transcriptional regulator | insig. | 46 | 86 |
| | Pseudomonas orientalis W4I3 | QF045_RS24850 | | response regulator transcription factor | cofit | 44 | 89 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS02130 | | hybrid sensor histidine kinase/response regulator | strong | 42 | 86 |
| | Pseudomonas sp. S08-1 | OH686_02480 | | DNA-binding response regulator GltR, controls specific porins for the entry of glucose | strong | 44 | 86 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1111 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | strong | 41 | 97 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1111 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | sig. | 41 | 97 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04690 | | Transcriptional regulatory protein OmpR | cofit | 41 | 98 |
| | Lysobacter sp. OAE881 | ABIE51_RS18145 | | response regulator | insig. | 40 | 83 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS08575 | | response regulator | insig. | 38 | 88 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04086 | | response regulator receiver domain protein | insig. | 40 | 91 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS05345 | | DNA-binding response regulator | insig. | 39 | 95 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS09310 | | two-component system response regulator | insig. | 44 | 95 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS24320 | | response regulator transcription factor | cofit | 44 | 89 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS24320 | | response regulator transcription factor | strong | 44 | 89 |
| | Pseudomonas simiae WCS417 | PS417_22680 | | chemotaxis protein CheY | strong | 44 | 89 |
| | Pseudomonas sp. S08-1 | OH686_07455 | | Response regulator c-di-GMP phosphodiesterase, RpfG family | insig. | 40 | 95 |
| | Dechlorosoma suillum PS | Dsui_0863 | | phosphate regulon transcriptional regulatory protein PhoB | insig. | 44 | 89 |
| | Shewanella amazonensis SB2B | Sama_3494 | | response regulator receiver protein (RefSeq) | sig. | 44 | 89 |
| | Variovorax sp. SCN45 | GFF5987 | | Response regulator BaeR | insig. | 42 | 97 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS03885 | | response regulator transcription factor | strong | 42 | 87 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_03275 | | hybrid sensor histidine kinase/response regulator | insig. | 40 | 89 |
| o | Kangiella aquimarina DSM 16071 | B158DRAFT_0188 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | strong | 36 | 88 |
| | Pseudomonas stutzeri RCH2 | Psest_1894 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | no data | 44 | 86 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS13445 | | chemotaxis protein CheY | sig. | 44 | 89 |
| | Rhodopseudomonas palustris CGA009 | TX73_006410 | | response regulator transcription factor | insig. | 43 | 87 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08635 | | response regulator | sig. | 42 | 92 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS04965 | | response regulator | insig. | 42 | 89 |
| | Pseudomonas sp. DMC3 | GFF5150 | | Transcriptional regulatory protein OmpR | insig. | 42 | 89 |
| | Azospirillum brasilense Sp245 | AZOBR_RS22685 | | response regulator PleD (with diguanylate cyclase and response regulator receiver domains) (fragment) | insig. | 43 | 86 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS35170 | | chemotaxis protein CheY | insig. | 43 | 90 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2896 | | DNA-binding response regulator GltR, controls specific porins for the entry of glucose | strong | 40 | 99 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS18255 | | DNA-binding response regulator | insig. | 38 | 95 |
| | Ralstonia solanacearum UW163 | UW163_RS20875 | | DNA-binding response regulator | insig. | 38 | 95 |
| | Pseudomonas segetis P6 | ACVTMO_RS03095 | pilG | twitching motility response regulator PilG | insig. | 35 | 88 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF642 | | twitching motility protein PilG | cofit | 34 | 94 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS02125 | | phosphate regulon transcriptional regulatory protein PhoB | sig. | 43 | 89 |
| | Ralstonia solanacearum UW163 | UW163_RS15435 | | phosphate regulon transcriptional regulatory protein PhoB | insig. | 43 | 89 |
| | Marinobacter adhaerens HP15 | HP15_3513 | | response regulator receiver domain protein (CheY) | sig. | 36 | 88 |
| o | Rhodanobacter sp. FW510-T8 | OKGIIK_11070 | pilG | twitching motility response regulator PilG | cofit | 34 | 92 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS22020 | pilG;inference=COORDINATES | twitching motility response regulator PilG | strong | 35 | 88 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_23380 | | twitching motility response regulator PilG | strong | 35 | 88 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS37280 | pilG;inference=COORDINATES | twitching motility response regulator PilG | strong | 35 | 88 |