Homologs of LRK54_RS02100 from Rhodanobacter denitrificans FW104-10B01

multidrug efflux RND transporter permease subunit
SEED: RND efflux system, inner membrane transporter CmeB
KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02100 multidrug efflux RND transporter permease subunit cofit 100 100
o Rhodanobacter denitrificans MT42 LRK55_RS01875 multidrug efflux RND transporter permease subunit cofit 100 100
o Rhodanobacter sp. FW510-T8 OKGIIK_09170 Efflux pump membrane transporter insig. 88 100
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07935 multidrug efflux RND transporter permease subunit insig. 80 100
o Lysobacter sp. OAE881 ABIE51_RS17980 multidrug efflux RND transporter permease subunit strong 73 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2179.1 RND efflux system, inner membrane transporter CmeB cofit 72 98
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07570 efflux RND transporter permease subunit strong 71 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2116 RND efflux system, inner membrane transporter CmeB insig. 53 96
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4379 RND efflux system, inner membrane transporter CmeB sig. 52 96
o Desulfovibrio vulgaris Hildenborough JW710 DVU2816 multidrug resistance protein (TIGR) sig. 52 97
o Herbaspirillum seropedicae SmR1 HSERO_RS02410 acriflavine resistance protein B strong 53 99
o Klebsiella pneumoniae MKP103 KDGMDA_14835 acriflavine resistance protein B strong 52 96
o Methylophilus sp. DMC18 GFF2593 Multidrug efflux pump subunit AcrB insig. 52 98
o Enterobacter asburiae PDN3 EX28DRAFT_2496 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family cofit 51 99
o Escherichia coli Nissle 1917 ECOLIN_RS02750 efflux RND transporter permease AcrB sig. 52 99
o Klebsiella michiganensis M5al BWI76_RS06775 multidrug efflux RND transporter permease subunit strong 52 99
o Enterobacter sp. TBS_079 MPMX20_01064 Multidrug efflux pump subunit AcrB strong 51 99
o Rahnella sp. WP5 EX31_RS22470 multidrug efflux RND transporter permease subunit cofit 52 98
o Pseudomonas sp. SVBP6 COO64_RS26275 efflux RND transporter permease subunit cofit 52 98
o Escherichia coli ECRC100 OKFHMN_08205 acrB efflux RND transporter permease AcrB cofit 52 96
o Escherichia coli ECRC101 MCAODC_27430 acrB efflux RND transporter permease AcrB cofit 52 96
o Escherichia coli ECRC102 NIAGMN_06260 acrB efflux RND transporter permease AcrB cofit 52 96
o Escherichia coli ECRC99 KEDOAH_19760 acrB efflux RND transporter permease AcrB no data 52 96
o Escherichia coli BL21 ECD_00413 multidrug efflux system protein strong 52 99
o Escherichia fergusonii Becca EFB2_03596 Multidrug efflux pump subunit AcrB insig. 52 99
o Escherichia coli ECOR27 NOLOHH_01140 acrB efflux RND transporter permease AcrB insig. 52 99
o Escherichia coli ECOR38 HEPCGN_06820 acrB efflux RND transporter permease AcrB strong 52 99
o Escherichia coli ECRC62 BNILDI_22555 acrB efflux RND transporter permease AcrB insig. 52 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03212 Multidrug efflux pump subunit AcrB cofit 52 99
o Escherichia coli BW25113 b0462 acrB multidrug efflux system protein (NCBI) strong 52 99
  Paraburkholderia sabiae LMG 24235 QEN71_RS29865 efflux RND transporter permease subunit insig. 52 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS02525 efflux RND transporter permease subunit strong 51 100
o Azospirillum sp. SherDot2 MPMX19_05884 Multidrug efflux pump subunit AcrB insig. 52 98
o Pseudomonas putida KT2440 PP_1385 Probable efflux pump membrane transporter TtgB strong 52 98
  Klebsiella pneumoniae MKP103 KDGMDA_06465 hydrophobe/amphiphile efflux-1 family RND transporter insig. 52 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2824 RND efflux system, inner membrane transporter CmeB strong 52 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04170 multidrug efflux pump strong 51 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4772 RND efflux system, inner membrane transporter CmeB strong 54 96
o Dickeya dadantii 3937 DDA3937_RS05735 multidrug efflux RND transporter permease subunit strong 52 99
o Paraburkholderia graminis OAS925 ABIE53_003408 multidrug efflux pump strong 50 100
  Escherichia coli BW25113 b3266 acrF multidrug efflux system protein (NCBI) insig. 52 98
o Pseudomonas fluorescens FW300-N2C3 AO356_04880 multidrug transporter strong 52 98
  Escherichia coli BL21 ECD_03124 multidrug efflux system protein insig. 52 98
o Cupriavidus basilensis FW507-4G11 RR42_RS32420 multidrug efflux RND transporter permease subunit insig. 52 97
  Escherichia coli ECOR27 NOLOHH_09440 acrF multidrug efflux RND transporter permease subunit AcrF insig. 52 98
  Escherichia coli ECRC62 BNILDI_02080 acrF multidrug efflux RND transporter permease subunit AcrF insig. 52 98
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00439 Multidrug export protein AcrF insig. 52 98
  Klebsiella michiganensis M5al BWI76_RS25585 multidrug efflux RND transporter permease subunit insig. 52 96
  Escherichia fergusonii Becca EFB2_00558 Multidrug export protein AcrF insig. 52 98
o Pseudomonas sp. S08-1 OH686_16050 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) cofit 52 98
  Escherichia coli Nissle 1917 ECOLIN_RS18755 multidrug efflux RND transporter permease subunit AcrF insig. 52 98
o Pseudomonas fluorescens FW300-N2E3 AO353_17295 multidrug transporter strong 52 97
o Pseudomonas sp. BP01 JOY50_RS14445 ttgB multidrug efflux RND transporter permease subunit TtgB cofit 51 98
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3246 RND efflux system, inner membrane transporter CmeB strong 51 98
  Pseudomonas fluorescens FW300-N2E3 AO353_26845 acriflavine resistance protein B strong 54 96
o Azospirillum brasilense Sp245 AZOBR_RS30185 multidrug transporter insig. 51 98
o Pseudomonas sp. RS175 PFR28_00631 putative efflux pump membrane transporter TtgB strong 51 98
o Pseudomonas sp. DMC3 GFF2212 Toluene efflux pump membrane transporter TtgB cofit 51 99
o Burkholderia phytofirmans PsJN BPHYT_RS16170 multidrug efflux RND transporter permease subunit no data 50 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_16580 adeB hydrophobe/amphiphile efflux-1 family RND transporter no data 51 96
  Enterobacter asburiae PDN3 EX28DRAFT_3319 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family insig. 51 96
o Erwinia tracheiphila SCR3 LU632_RS18185 efflux RND transporter permease subunit no data 51 96
  Cupriavidus basilensis FW507-4G11 RR42_RS20650 multidrug efflux RND transporter permease subunit strong 53 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4581 RND efflux system, inner membrane transporter CmeB strong 51 98
o Dickeya dianthicola ME23 DZA65_RS06115 multidrug efflux RND transporter permease subunit strong 52 96
o Serratia liquefaciens MT49 IAI46_05185 multidrug efflux RND transporter permease subunit SdeY cofit 52 99
o Pectobacterium carotovorum WPP14 HER17_RS15740 multidrug efflux RND transporter permease subunit cofit 52 98
o Erwinia amylovora T8 OLJFJH_17855 multidrug efflux RND transporter permease subunit AcrB strong 51 98
  Enterobacter sp. TBS_079 MPMX20_04175 Multidrug export protein AcrF insig. 51 96
o Pseudomonas aeruginosa PA14 IKLFDK_23290 multidrug efflux RND transporter permease subunit MexB cofit 51 98
o Dickeya dianthicola 67-19 HGI48_RS05790 multidrug efflux RND transporter permease subunit cofit 52 96
  Pseudomonas sp. DMC3 GFF2918 Multidrug efflux pump subunit AcrB cofit 53 96
o Pseudomonas syringae pv. syringae B728a Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 strong 50 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 no data 50 98
  Pseudomonas sp. BP01 JOY50_RS19675 efflux RND transporter permease subunit insig. 54 96
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2954 RND efflux system, inner membrane transporter CmeB strong 53 96
o Caulobacter crescentus NA1000 CCNA_00850 cation/multidrug efflux pump acrB2 strong 52 98
o Caulobacter crescentus NA1000 Δfur CCNA_00850 cation/multidrug efflux pump acrB2 cofit 52 98
o Pseudomonas segetis P6 MPMX49_00685 Multidrug resistance protein MexB insig. 50 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_02772 Multidrug resistance protein MexB cofit 54 96
o Sinorhizobium meliloti 1021 SMc02867 multidrug-efflux system transmembrane protein strong 52 96
o Pseudomonas simiae WCS417 PS417_06770 multidrug transporter strong 51 97
o Pantoea sp. MT58 IAI47_14515 multidrug efflux RND transporter permease subunit cofit 51 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS10680 multidrug efflux RND transporter permease subunit cofit 51 99
  Pseudomonas fluorescens FW300-N2C3 AO356_28730 acriflavine resistance protein B strong 53 96
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1661 RND efflux system, inner membrane transporter CmeB strong 53 96
o Pseudomonas stutzeri RCH2 Psest_0310 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family strong 50 97
  Herbaspirillum seropedicae SmR1 HSERO_RS23055 multidrug transporter insig. 50 97
o Pseudomonas fluorescens SBW25 PFLU_RS13280 multidrug efflux RND transporter permease subunit insig. 53 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS13280 multidrug efflux RND transporter permease subunit sig. 53 96
o Shewanella oneidensis MR-1 SO4692 AcrB/AcrD/AcrF family protein (NCBI ptt file) strong 50 98
o Shewanella amazonensis SB2B Sama_3554 AcrB/AcrD/AcrF family protein (RefSeq) strong 49 99
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00999 multidrug efflux pump insig. 49 99
o Ralstonia solanacearum PSI07 RPSI07_RS03390 multidrug efflux RND transporter permease subunit insig. 52 98
  Escherichia coli BL21 ECD_02361 aminoglycoside/multidrug efflux system insig. 50 97
  Escherichia coli BW25113 b2470 acrD aminoglycoside/multidrug efflux system (NCBI) strong 50 97
  Escherichia fergusonii Becca EFB2_01418 Multidrug efflux pump subunit AcrB insig. 49 97
  Escherichia coli ECOR38 HEPCGN_21140 acrD multidrug efflux RND transporter permease AcrD insig. 49 97
  Escherichia coli ECRC62 BNILDI_12460 acrD multidrug efflux RND transporter permease AcrD insig. 49 97
  Pseudomonas sp. RS175 PFR28_02463 Multidrug resistance protein MexB insig. 53 96