Homologs of HMPREF1181_RS04660 from Bacteroides stercoris CC31F

sigma-70 family RNA polymerase sigma factor
SEED: RNA polymerase ECF-type sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Bacteroides stercoris CC31F HMPREF1181_RS04660 sigma-70 family RNA polymerase sigma factor insig. 100 100
o Bacteroides ovatus ATCC 8483 BACOVA_00397 Sigma-70 region 2 sig. 78 98
o Bacteroides thetaiotaomicron VPI-5482 BT0248 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 82 91
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS07350 sigma-70 family RNA polymerase sigma factor insig. 48 97
  Bacteroides thetaiotaomicron VPI-5482 BT2492 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 43 98
  Bacteroides thetaiotaomicron VPI-5482 BT2184 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 41 96
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02825 sigma-70 family RNA polymerase sigma factor insig. 38 94
o Rhodanobacter denitrificans MT42 LRK55_RS02580 sigma-70 family RNA polymerase sigma factor cofit 38 94
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1840.1 FIG01210863: hypothetical protein insig. 34 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS09150 sigma-70 family RNA polymerase sigma factor insig. 40 92
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07715 RNA polymerase sigma factor no data 38 95
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12735 RNA polymerase subunit sigma-70 insig. 34 100
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14620 hypothetical protein insig. 36 94
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1304 RNA polymerase sigma factor, sigma-70 family insig. 39 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10600 RNA polymerase subunit sigma-24 strong 35 98
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04360 sigma-70 family RNA polymerase sigma factor insig. 33 91
  Caulobacter crescentus NA1000 CCNA_03419 RNA polymerase ECF-type sigma factor sig. 33 77
  Caulobacter crescentus NA1000 Δfur CCNA_03419 RNA polymerase ECF-type sigma factor cofit 33 77
  Bacteroides thetaiotaomicron VPI-5482 BT1817 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 33 93
  Lysobacter sp. OAE881 ABIE51_RS16295 sigma-70 family RNA polymerase sigma factor insig. 28 89
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 29 96
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16905 sigma-70 family RNA polymerase sigma factor insig. 37 75
  Phocaeicola dorei CL03T12C01 ABI39_RS12855 RNA polymerase sigma factor insig. 29 97
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16945 RNA polymerase sigma factor sig. 29 97
  Phocaeicola dorei CL03T12C01 ABI39_RS12815 sigma-70 family RNA polymerase sigma factor insig. 37 75
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 25 95
  Bacteroides ovatus ATCC 8483 BACOVA_05165 Sigma-70 region 2 insig. 29 95
  Bacteroides stercoris CC31F HMPREF1181_RS08110 sigma-70 family RNA polymerase sigma factor insig. 27 97
  Bacteroides stercoris CC31F HMPREF1181_RS05860 sigma-70 family RNA polymerase sigma factor insig. 29 96
  Bacteroides thetaiotaomicron VPI-5482 BT4720 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) cofit 31 91
  Bacteroides thetaiotaomicron VPI-5482 BT4347 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 31 79
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 29 89
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS18950 sigma-70 family RNA polymerase sigma factor insig. 28 92
  Alteromonas macleodii MIT1002 MIT1002_03807 Sigma-W factor insig. 26 94
  Pseudomonas syringae pv. syringae B728a Psyr_2096 Sigma-70 region 2 no data 25 95
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2096 Sigma-70 region 2 no data 25 95
  Shewanella oneidensis MR-1 SO3840 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 23 89
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15730 RNA polymerase sigma factor sig. 29 96
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13165 RNA polymerase sigma factor insig. 29 83
  Shewanella amazonensis SB2B Sama_2611 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 23 93
  Bacteroides thetaiotaomicron VPI-5482 BT2044 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 93
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS07720 sigma-70 family RNA polymerase sigma factor strong 29 89
  Phocaeicola dorei CL03T12C01 ABI39_RS11710 RNA polymerase sigma factor insig. 29 94
  Phocaeicola dorei CL03T12C01 ABI39_RS00235 sigma-70 family RNA polymerase sigma factor sig. 29 89
  Pseudomonas fluorescens SBW25 PFLU_RS22600 RNA polymerase sigma factor SigX strong 25 95
  Pseudomonas fluorescens SBW25-INTG PFLU_RS22600 RNA polymerase sigma factor SigX strong 25 95
  Pseudomonas simiae WCS417 PS417_20990 RNA polymerase sigma factor SigX no data 25 95
  Bacteroides ovatus ATCC 8483 BACOVA_00669 Sigma-70 region 2 insig. 29 91
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 27 93
  Rhodanobacter denitrificans MT42 LRK55_RS05200 sigma-70 family RNA polymerase sigma factor insig. 26 89
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS05425 sigma-70 family RNA polymerase sigma factor insig. 26 89
  Pseudomonas fluorescens FW300-N2E3 AO353_00830 RNA polymerase subunit sigma no data 25 95
  Pseudomonas fluorescens FW300-N2C3 AO356_02795 RNA polymerase subunit sigma no data 24 95
  Pseudomonas putida KT2440 PP_2088 RNA polymerase sigma factor SigX strong 24 95
  Alteromonas macleodii MIT1002 MIT1002_04051 Sigma-24 insig. 24 93
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14290 sigma-70 family RNA polymerase sigma factor insig. 27 96
  Phocaeicola dorei CL03T12C01 ABI39_RS09920 sigma-70 family RNA polymerase sigma factor insig. 27 96
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19605 RNA polymerase insig. 26 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15190 RNA polymerase sigma factor insig. 28 89
  Rhodanobacter sp. FW510-T8 OKGIIK_01380 rpoE RNA polymerase subunit sigma-24 insig. 26 89
  Bacteroides ovatus ATCC 8483 BACOVA_04302 Sigma-70 region 2 insig. 26 91
  Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 24 96
  Bacteroides thetaiotaomicron VPI-5482 BT4647 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 27 94
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07500 sigma-70 family RNA polymerase sigma factor insig. 29 78
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 25 91
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 25 91
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 25 91
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 25 91
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 75
  Phaeobacter inhibens DSM 17395 PGA1_c27510 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' insig. 30 81
  Kangiella aquimarina DSM 16071 B158DRAFT_2027 RNA polymerase sigma factor, sigma-70 family insig. 27 94
  Bacteroides ovatus ATCC 8483 BACOVA_05570 Sigma-70 region 2 insig. 29 91
  Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 27 84
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16705 RNA polymerase sigma factor strong 27 95
  Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 24 91
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4578 RNA polymerase sigma factor, sigma-70 family insig. 22 87
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 26 91
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 26 91
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 26 91
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 26 91
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 26 91
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 23 93
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3635.1 RNA polymerase ECF-type sigma factor insig. 23 91
  Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 23 93
  Bacteroides stercoris CC31F HMPREF1181_RS10740 sigma-70 family RNA polymerase sigma factor sig. 27 91
  Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 31 75
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00655 RNA polymerase subunit sigma-24 strong 28 98
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 25 94
  Rhodanobacter denitrificans MT42 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor cofit 27 78
  Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 29 79
  Mycobacterium tuberculosis H37Rv Rv0182c Probable alternative RNA polymerase sigma factor SigG (RNA polymerase ECF type sigma factor) insig. 33 55
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 24 96
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 24 96
  Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 24 93
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22010 RNA polymerase sigma factor insig. 24 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0865 RNA polymerase sigma factor, sigma-70 family insig. 25 97
  Pseudomonas sp. S08-1 OH686_01630 RNA polymerase sigma factor SigX no data 23 96
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 25 96
  Klebsiella michiganensis M5al BWI76_RS21355 RNA polymerase sigma factor RpoE no data 25 84
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE cofit 24 88