Homologs of HMPREF1181_RS04575 from Bacteroides stercoris CC31F

multidrug efflux RND transporter permease subunit
SEED: RND efflux system, inner membrane transporter CmeB

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Bacteroides stercoris CC31F HMPREF1181_RS04575 multidrug efflux RND transporter permease subunit sig. 100 100
o Bacteroides thetaiotaomicron VPI-5482 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) sig. 92 100
o Bacteroides ovatus ATCC 8483 BACOVA_00422 RND transporter, HAE1 family insig. 91 100
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05160 multidrug efflux RND transporter permease subunit insig. 86 100
o Phocaeicola dorei CL03T12C01 ABI39_RS18725 multidrug efflux RND transporter permease subunit insig. 85 100
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS00010 multidrug efflux RND transporter permease subunit insig. 76 99
o Shewanella sp. ANA-3 Shewana3_1993 acriflavin resistance protein (RefSeq) cofit 50 99
  Pseudomonas sp. S08-1 OH686_07370 RND efflux system, inner membrane transporter cofit 44 100
  Desulfovibrio vulgaris Miyazaki F DvMF_2163 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) strong 46 99
o Desulfovibrio vulgaris Hildenborough JW710 DVU0061 multidrug resistance protein, putative (TIGR) strong 44 100
  Dechlorosoma suillum PS Dsui_1871 hydrophobe/amphiphile efflux-1 (HAE1) family transporter strong 43 100
  Sinorhizobium meliloti 1021 SMa1662 Cation/multidrug efflux pump insig. 43 99
  Marinobacter adhaerens HP15 HP15_933 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family insig. 44 99
  Desulfovibrio vulgaris Miyazaki F DvMF_0036 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) insig. 44 99
  Desulfovibrio vulgaris Hildenborough JW710 DVU3248 AcrB/AcrD/AcrF family protein (TIGR) insig. 43 100
o Paraburkholderia graminis OAS925 ABIE53_005788 multidrug efflux pump insig. 44 100
  Shewanella loihica PV-4 Shew_1164 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) insig. 43 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS09205 multidrug efflux RND transporter permease subunit no data 45 99
  Paraburkholderia sabiae LMG 24235 QEN71_RS03455 multidrug efflux RND transporter permease subunit insig. 45 99
  Burkholderia phytofirmans PsJN BPHYT_RS20640 multidrug efflux RND transporter permease subunit insig. 44 98
  Herbaspirillum seropedicae SmR1 HSERO_RS02410 acriflavine resistance protein B strong 42 100
  Variovorax sp. SCN45 GFF429 RND efflux system, inner membrane transporter insig. 44 98
  Sinorhizobium meliloti 1021 SM_b21498 acriflavin resistance protein insig. 44 100
o Enterobacter sp. TBS_079 MPMX20_03331 Multidrug efflux pump subunit AcrB insig. 42 99
o Escherichia fergusonii Becca EFB2_01418 Multidrug efflux pump subunit AcrB insig. 41 99
o Escherichia coli Nissle 1917 ECOLIN_RS14090 multidrug efflux RND transporter permease AcrD insig. 41 99
o Klebsiella michiganensis M5al BWI76_RS20860 aminoglycoside/multidrug transporter subunit AcrD insig. 42 99
o Escherichia coli BL21 ECD_02361 aminoglycoside/multidrug efflux system insig. 41 99
o Escherichia coli ECRC62 BNILDI_12460 acrD multidrug efflux RND transporter permease AcrD insig. 41 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01261 Multidrug efflux pump subunit AcrB insig. 41 99
o Escherichia coli BW25113 b2470 acrD aminoglycoside/multidrug efflux system (NCBI) strong 41 99
  Enterobacter sp. TBS_079 MPMX20_01142 Efflux pump membrane transporter BepG insig. 42 99
o Escherichia coli ECOR38 HEPCGN_21140 acrD multidrug efflux RND transporter permease AcrD insig. 41 99
o Escherichia coli ECOR27 NOLOHH_13650 acrD multidrug efflux RND transporter permease AcrD cofit 41 99
o Escherichia coli ECRC100 OKFHMN_21970 acrD multidrug efflux RND transporter permease AcrD cofit 41 99
o Escherichia coli ECRC101 MCAODC_12500 acrD multidrug efflux RND transporter permease AcrD insig. 41 99
o Escherichia coli ECRC102 NIAGMN_19740 acrD multidrug efflux RND transporter permease AcrD insig. 41 99
o Escherichia coli ECRC98 JDDGAC_25915 acrD multidrug efflux RND transporter permease AcrD insig. 41 99
o Escherichia coli ECRC99 KEDOAH_06250 acrD multidrug efflux RND transporter permease AcrD no data 41 99
o Ralstonia sp. UNC404CL21Col ABZR87_RS09795 efflux RND transporter permease subunit insig. 44 97
o Enterobacter asburiae PDN3 EX28DRAFT_0191 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family insig. 42 99
  Variovorax sp. OAS795 ABID97_RS17350 efflux RND transporter permease subunit insig. 44 100
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4246 RND efflux system, inner membrane transporter CmeB insig. 43 99
o Azospirillum sp. SherDot2 MPMX19_05884 Multidrug efflux pump subunit AcrB insig. 42 98
  Acidovorax sp. GW101-3H11 Ac3H11_258 RND multidrug efflux transporter; Acriflavin resistance protein insig. 44 98
  Rhizobium sp. OAE497 ABIE40_RS23875 multidrug efflux RND transporter permease subunit insig. 42 99
  Enterobacter asburiae PDN3 EX28DRAFT_2418 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family insig. 42 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1794.1 RND efflux system, inner membrane transporter CmeB insig. 42 99
o Rahnella sp. WP5 EX31_RS22805 multidrug efflux RND transporter permease AcrD insig. 42 99
  Rhizobium sp. OAE497 ABIE40_RS14935 efflux RND transporter permease subunit insig. 43 98
o Rhodanobacter sp. FW510-T8 OKGIIK_09170 Efflux pump membrane transporter insig. 42 99
o Sphingomonas koreensis DSMZ 15582 Ga0059261_1850 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family insig. 43 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2188 RND efflux system, inner membrane transporter CmeB cofit 41 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01877 multidrug efflux pump insig. 43 99
o Cupriavidus basilensis FW507-4G11 RR42_RS32420 multidrug efflux RND transporter permease subunit insig. 43 99
o Lysobacter sp. OAE881 ABIE51_RS17980 multidrug efflux RND transporter permease subunit strong 44 98
  Herbaspirillum seropedicae SmR1 HSERO_RS23055 multidrug transporter insig. 41 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02100 multidrug efflux RND transporter permease subunit cofit 43 99
o Pectobacterium carotovorum WPP14 HER17_RS01560 multidrug efflux RND transporter permease AcrD cofit 42 97
  Sinorhizobium meliloti 1021 SMc03971 multidrug-efflux system transmembrane protein insig. 42 99
o Rhodanobacter denitrificans MT42 LRK55_RS01875 multidrug efflux RND transporter permease subunit cofit 43 99
  Pseudomonas simiae WCS417 PS417_13190 transporter insig. 42 99
o Azospirillum brasilense Sp245 AZOBR_RS30185 multidrug transporter insig. 42 98
  Pseudomonas fluorescens SBW25 PFLU_RS14260 efflux RND transporter permease subunit insig. 42 99
  Pseudomonas fluorescens SBW25-INTG PFLU_RS14260 efflux RND transporter permease subunit insig. 42 99
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3740 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family strong 43 98
  Pseudomonas syringae pv. syringae B728a Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 sig. 43 99
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 strong 43 99
  Pseudomonas putida KT2440 PP_3426 Multidrug efflux RND transporter MexF sig. 43 99
  Pseudomonas fluorescens FW300-N2C3 AO356_27605 transporter strong 43 100
  Rahnella sp. WP5 EX31_RS24355 multidrug efflux RND transporter permease subunit insig. 42 99
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02440 multidrug efflux RND transporter permease subunit insig. 40 99
  Magnetospirillum magneticum AMB-1 AMB_RS17325 multidrug efflux RND transporter permease subunit insig. 43 99
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS07690 multidrug efflux RND transporter permease subunit insig. 42 100
  Phocaeicola dorei CL03T12C01 ABI39_RS01690 multidrug efflux RND transporter permease subunit insig. 41 99
  Bacteroides thetaiotaomicron VPI-5482 BT0886 putative cation efflux pump (NCBI ptt file) sig. 42 99
  Shewanella loihica PV-4 Shew_3796 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) insig. 42 99
  Bacteroides ovatus ATCC 8483 BACOVA_02607 RND transporter, HAE1 family cofit 41 100
  Rhizobium sp. OAE497 ABIE40_RS14875 multidrug efflux RND transporter permease subunit insig. 43 100
o Serratia liquefaciens MT49 IAI46_18690 multidrug efflux RND transporter permease AcrD insig. 41 99
  Klebsiella michiganensis M5al BWI76_RS07505 hydrophobe/amphiphile efflux-1 family RND transporter insig. 41 100
o Kangiella aquimarina DSM 16071 B158DRAFT_0733 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family strong 41 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2116 RND efflux system, inner membrane transporter CmeB insig. 42 97
  Desulfovibrio vulgaris Hildenborough JW710 DVU2816 multidrug resistance protein (TIGR) sig. 42 98
  Klebsiella michiganensis M5al BWI76_RS25585 multidrug efflux RND transporter permease subunit insig. 42 97
  Rhodopseudomonas palustris CGA009 TX73_015325 efflux RND transporter permease subunit insig. 41 99
  Pectobacterium carotovorum WPP14 HER17_RS15740 multidrug efflux RND transporter permease subunit cofit 42 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4379 RND efflux system, inner membrane transporter CmeB sig. 41 97
  Burkholderia phytofirmans PsJN BPHYT_RS16170 multidrug efflux RND transporter permease subunit no data 42 99
  Enterobacter asburiae PDN3 EX28DRAFT_2496 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family cofit 42 97
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3060 Multidrug efflux transporter MexF insig. 42 99
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04170 multidrug efflux pump strong 42 99
  Enterobacter sp. TBS_079 MPMX20_01064 Multidrug efflux pump subunit AcrB strong 42 97
  Escherichia coli BL21 ECD_00413 multidrug efflux system protein strong 41 97
  Escherichia fergusonii Becca EFB2_03596 Multidrug efflux pump subunit AcrB insig. 41 97
  Escherichia coli ECOR27 NOLOHH_01140 acrB efflux RND transporter permease AcrB cofit 41 97
  Escherichia coli ECOR38 HEPCGN_06820 acrB efflux RND transporter permease AcrB strong 41 97
  Escherichia coli ECRC62 BNILDI_22555 acrB efflux RND transporter permease AcrB cofit 41 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03212 Multidrug efflux pump subunit AcrB cofit 41 97
  Escherichia coli Nissle 1917 ECOLIN_RS02750 efflux RND transporter permease AcrB sig. 41 97