Homologs of GFF2318 from Xanthobacter sp. DMC5

Phyllosphere-induced regulator PhyR
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like

184 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF2318 Phyllosphere-induced regulator PhyR insig. 100 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14785 response regulator strong 54 95
o Caulobacter crescentus NA1000 CCNA_03591 anti-anti sigma factor/receiver protein PhyR strong 55 95
o Caulobacter crescentus NA1000 Δfur CCNA_03591 anti-anti sigma factor/receiver protein PhyR cofit 55 95
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3490 Response regulator receiver domain/Sigma-70, region 4 strong 55 94
o Sphingobium sp. HT1-2 GFF2319 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like cofit 54 95
o Rhodospirillum rubrum S1H Rru_A3285 Response regulator receiver domain protein (CheY) (NCBI) insig. 48 96
o Bosea sp. OAE506 ABIE41_RS04085 response regulator sig. 50 92
o Rhodopseudomonas palustris CGA009 TX73_021890 response regulator cofit 48 93
o Rhizobium sp. OAE497 ABIE40_RS14460 response regulator strong 48 93
o Sinorhizobium meliloti 1021 SMc00794 two-component response regulator strong 50 93
  Sinorhizobium meliloti 1021 SMc01504 two-component response regulator strong 48 92
o Phaeobacter inhibens DSM 17395 PGA1_c27080 response regulator receiver protein insig. 44 94
o Agrobacterium fabrum C58 Atu4162 two-component response regulator strong 45 93
o Dinoroseobacter shibae DFL-12 Dshi_3837 response regulator receiver and SARP domain protein (RefSeq) insig. 44 92
o Azospirillum brasilense Sp245 AZOBR_RS21690 regulator insig. 36 93
  Azospirillum sp. SherDot2 MPMX19_04424 Phyllosphere-induced regulator PhyR insig. 33 98
  Azospirillum brasilense Sp245 AZOBR_RS06745 regulator insig. 30 93
  Azospirillum sp. SherDot2 MPMX19_01090 Phyllosphere-induced regulator PhyR insig. 30 93
  Rhizobium sp. OAE497 ABIE40_RS22785 response regulator insig. 37 49
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0505 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain insig. 38 42
  Azospirillum sp. SherDot2 MPMX19_02869 Sensor histidine kinase TmoS insig. 31 46
  Desulfovibrio vulgaris Hildenborough JW710 DVU0681 sensor histidine kinase/response regulator (TIGR) strong 34 49
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS00670 response regulator no data 37 45
  Desulfovibrio vulgaris Miyazaki F DvMF_2677 response regulator receiver sensor hybrid histidine kinase (RefSeq) sig. 35 48
  Desulfovibrio vulgaris Miyazaki F DvMF_1460 putative PAS/PAC sensor protein (RefSeq) cofit 34 47
  Cellulophaga baltica 18 M666_RS13715 response regulator strong 30 44
  Agrobacterium fabrum C58 Atu5378 two component response regulator no data 37 39
  Sinorhizobium meliloti 1021 SMa0114 two-component response regulator cofit 38 43
  Synechocystis sp000284455 PCC 6803 SGL_RS06080 response regulator transcription factor insig. 31 49
  Rhizobium sp. OAE497 ABIE40_RS27485 response regulator insig. 38 43
  Rhizobium sp. OAE497 ABIE40_RS20270 response regulator insig. 33 48
  Rhizobium sp. OAE497 ABIE40_RS24250 response regulator insig. 38 43
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0013 Signal transduction histidine kinase no data 34 48
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19190 DNA-binding response regulator insig. 29 46
  Azospirillum brasilense Sp245 AZOBR_RS25995 regulator strong 37 39
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1054 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 30 46
  Azospirillum sp. SherDot2 MPMX19_06040 Phyllosphere-induced regulator PhyR insig. 36 48
  Mycobacterium tuberculosis H37Rv Rv1626 Probable two-component system transcriptional regulator strong 40 39
  Rhizobium sp. OAE497 ABIE40_RS26630 response regulator insig. 32 46
  Rhizobium sp. OAE497 ABIE40_RS27480 response regulator insig. 38 39
  Caulobacter crescentus NA1000 CCNA_00286 two-component receiver domain protein LovR cofit 33 43
  Caulobacter crescentus NA1000 Δfur CCNA_00286 two-component receiver domain protein LovR cofit 33 43
  Desulfovibrio vulgaris Hildenborough JW710 DVU0933 response regulator (TIGR) insig. 38 31
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2154 Response regulator of the LytR/AlgR family insig. 33 47
  Rhizobium sp. OAE497 ABIE40_RS30650 response regulator insig. 43 31
  Bosea sp. OAE506 ABIE41_RS24110 response regulator insig. 41 34
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1141 Response regulator of the LytR/AlgR family no data 28 44
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1459.1 Two-component system regulatory protein insig. 32 40
  Desulfovibrio vulgaris Miyazaki F DvMF_1374 putative PAS/PAC sensor protein (RefSeq) sig. 43 31
  Rhizobium sp. OAE497 ABIE40_RS27445 response regulator insig. 34 31
  Cellulophaga baltica 18 M666_RS18600 response regulator strong 26 39
  Alteromonas macleodii MIT1002 MIT1002_04223 Transcriptional regulatory protein YycF insig. 32 43
  Sphingobium sp. HT1-2 GFF1633 Response regulator receiver protein insig. 28 51
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3803 Response regulator of the LytR/AlgR family strong 25 49
  Caulobacter crescentus NA1000 CCNA_02967 PAS-family sensor histidine kinase cofit 25 62
  Caulobacter crescentus NA1000 Δfur CCNA_02967 PAS-family sensor histidine kinase insig. 25 62
  Rhizobium sp. OAE497 ABIE40_RS27375 response regulator insig. 36 32
  Azospirillum brasilense Sp245 AZOBR_RS07605 regulator strong 31 39
  Agrobacterium fabrum C58 Atu4671 response regulator insig. 34 44
  Cellulophaga baltica 18 M666_RS12540 sigma 54-interacting response regulator insig. 29 45
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2971 Response regulator receiver domain no data 32 49
  Desulfovibrio vulgaris Hildenborough JW710 DVU2933 response regulator/sensory box/HDIG domain protein (TIGR) strong 29 44
  Shewanella amazonensis SB2B Sama_2699 response regulator receiver protein (RefSeq) insig. 34 33
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0208 Response regulator receiver domain strong 30 43
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS01555 response regulator insig. 31 38
  Bosea sp. OAE506 ABIE41_RS00485 response regulator insig. 30 38
  Sphingobium sp. HT1-2 GFF5152 hypothetical protein cofit 37 39
  Sphingobium sp. HT1-2 GFF4974 hypothetical protein cofit 35 39
  Azospirillum sp. SherDot2 MPMX19_04973 hypothetical protein insig. 34 39
  Sinorhizobium meliloti 1021 SMc01953 2-component receiver domain-containing protein insig. 31 43
  Agrobacterium fabrum C58 Atu1038 two component response regulator insig. 32 39
  Caulobacter crescentus NA1000 CCNA_02659 two-component receiver domain protein cofit 32 39
  Caulobacter crescentus NA1000 Δfur CCNA_02659 two-component receiver domain protein cofit 32 39
  Rhodospirillum rubrum S1H Rru_A0694 Response regulator receiver (CheY) and unknown domain protein (NCBI) insig. 30 41
  Azospirillum brasilense Sp245 AZOBR_RS32580 hypothetical protein insig. 32 38
  Azospirillum sp. SherDot2 MPMX19_04269 hypothetical protein no data 34 38
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_07605 response regulator insig. 30 44
  Azospirillum sp. SherDot2 MPMX19_06289 hypothetical protein no data 33 46
  Pseudomonas fluorescens FW300-N2C3 AO356_23975 chemotaxis protein CheY no data 32 46
  Azospirillum sp. SherDot2 MPMX19_01361 Sensor histidine kinase RcsC insig. 31 46
  Variovorax sp. SCN45 GFF6946 Sensory box histidine kinase/response regulator sig. 29 44
  Rhodopseudomonas palustris CGA009 TX73_005095 HWE histidine kinase domain-containing protein insig. 25 43
  Magnetospirillum magneticum AMB-1 AMB_RS13275 response regulator cofit 35 31
  Azospirillum sp. SherDot2 MPMX19_00465 putative transcriptional regulatory protein pdtaR insig. 31 43
  Pseudomonas sp. BP01 JOY50_RS28110 PAS domain-containing protein insig. 29 44
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 26 47
  Shewanella loihica PV-4 Shew_2801 multi-sensor hybrid histidine kinase (RefSeq) insig. 33 38
  Sphingobium sp. HT1-2 GFF2215 Two-component system sensor histidine kinase cofit 31 39
  Azospirillum sp. SherDot2 MPMX19_03190 hypothetical protein no data 29 39
  Acinetobacter baumannii LAC-4 RR41_RS17670 LytTR family DNA-binding domain-containing protein insig. 29 43
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 27 47
  Rhizobium sp. OAE497 ABIE40_RS14515 HWE histidine kinase domain-containing protein insig. 25 45
  Rhodanobacter sp. FW510-T8 OKGIIK_02885 ompR response regulator insig. 33 35
  Sphingobium sp. HT1-2 GFF3119 putative sensory transduction regulatory protein cofit 31 43
  Agrobacterium fabrum C58 Atu2165 bacteriophytochrome protein insig. 23 55
  Xanthobacter sp. DMC5 GFF481 Phyllosphere-induced regulator PhyR insig. 36 33
  Azospirillum sp. SherDot2 MPMX19_00513 Phosphotransferase RcsD insig. 33 34
  Azospirillum brasilense Sp245 AZOBR_RS00410 histidine kinase insig. 33 43
  Acinetobacter radioresistens SK82 MPMX26_00187 Transcriptional regulatory protein YpdB insig. 29 38
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13720 LytTR family DNA-binding domain-containing protein insig. 33 41
  Marinobacter adhaerens HP15 HP15_3428 response regulator receiver protein strong 32 39
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19085 sigma-54-dependent Fis family transcriptional regulator insig. 32 32
  Azospirillum brasilense Sp245 AZOBR_RS16625 regulator insig. 28 33
  Rhizobium sp. OAE497 ABIE40_RS27195 response regulator insig. 25 44
  Sphingobium sp. HT1-2 GFF5140 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) cofit 25 69
  Lysobacter sp. OAE881 ABIE51_RS09860 response regulator no data 33 31
  Bifidobacterium breve UCC2003 BBR_RS14310 ANTAR domain-containing protein no data 30 43
  Desulfovibrio vulgaris Miyazaki F DvMF_1251 multi-sensor hybrid histidine kinase (RefSeq) insig. 31 37
  Pseudomonas orientalis W4I3 QF045_RS19615 response regulator transcription factor insig. 30 47
  Cellulophaga baltica 18 M666_RS03195 sigma-54 dependent transcriptional regulator insig. 29 49
  Azospirillum sp. SherDot2 MPMX19_01268 Sensor histidine kinase RcsC insig. 27 31
  Pseudomonas sp. SVBP6 COO64_RS23795 PAS domain-containing hybrid sensor histidine kinase/response regulator insig. 26 46
  Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 29 47
  Dechlorosoma suillum PS Dsui_1302 RNA polymerase sigma factor, sigma-70 family cofit 56 14
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_10140 DNA-binding response regulator insig. 37 45
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20000 sigma-54-dependent Fis family transcriptional regulator insig. 33 45
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS06585 response regulator no data 31 46
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS00090 sigma-54 dependent transcriptional regulator cofit 30 48
  Rhizobium sp. OAE497 ABIE40_RS30880 hypothetical protein insig. 33 31
  Bosea sp. OAE506 ABIE41_RS07045 response regulator insig. 29 41
  Rhizobium sp. OAE497 ABIE40_RS06090 response regulator insig. 27 39
  Magnetospirillum magneticum AMB-1 AMB_RS19665 response regulator no data 30 43
  Azospirillum sp. SherDot2 MPMX19_02046 Sensor histidine kinase RcsC insig. 37 30
  Castellaniella sp019104865 MT123 ABCV34_RS02930 response regulator insig. 32 49
  Acidovorax sp. GW101-3H11 Ac3H11_4011 Putative sensory histidine kinase YfhA sig. 32 46
  Enterobacter asburiae PDN3 EX28DRAFT_1517 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain insig. 31 49
  Sphingobium sp. HT1-2 GFF4850 hypothetical protein cofit 31 42
  Azospirillum brasilense Sp245 AZOBR_RS21875 histidine kinase sig. 28 43
  Caulobacter crescentus NA1000 CCNA_03110 two-component receiver domain protein strong 28 43
  Caulobacter crescentus NA1000 Δfur CCNA_03110 two-component receiver domain protein cofit 28 43
  Bosea sp. OAE506 ABIE41_RS08275 HWE histidine kinase domain-containing protein insig. 26 43
  Magnetospirillum magneticum AMB-1 AMB_RS17710 response regulator cofit 25 46
  Azospirillum sp. SherDot2 MPMX19_03928 Sensor histidine kinase RcsC insig. 35 33
  Pseudomonas simiae WCS417 PS417_17415 histidine kinase strong 31 44
  Paraburkholderia graminis OAS925 ABIE53_005985 signal transduction histidine kinase/CheY-like chemotaxis protein strong 30 43
  Rhizobium sp. OAE497 ABIE40_RS26125 response regulator insig. 28 39
  Pseudomonas putida KT2440 PP_3546 Sensory box histidine kinase/response regulator insig. 26 44
  Pseudomonas orientalis W4I3 QF045_RS11300 response regulator insig. 34 41
  Desulfovibrio vulgaris Miyazaki F DvMF_2748 two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) insig. 28 48
  Pseudomonas syringae pv. syringae B728a Psyr_3612 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal sig. 34 39
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3612 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal insig. 34 39
  Lysobacter sp. OAE881 ABIE51_RS00635 hybrid sensor histidine kinase/response regulator strong 33 42
  Alteromonas macleodii MIT1002 MIT1002_01993 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP insig. 31 43
  Paraburkholderia sabiae LMG 24235 QEN71_RS30720 hybrid sensor histidine kinase/response regulator insig. 30 42
  Bosea sp. OAE506 ABIE41_RS16240 response regulator insig. 29 41
  Azospirillum sp. SherDot2 MPMX19_06291 hypothetical protein no data 27 39
  Pseudomonas sp. SVBP6 COO64_RS17420 PAS domain-containing sensor histidine kinase cofit 25 43
  Dechlorosoma suillum PS Dsui_0845 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains cofit 24 43
  Rhizobium sp. OAE497 ABIE40_RS17030 response regulator cofit 35 39
  Desulfovibrio vulgaris Hildenborough JW710 DVU3303 lon ATP-dependent protease La, truncation (TIGR) cofit 28 43
  Desulfovibrio vulgaris Miyazaki F DvMF_1260 two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) insig. 35 31
  Phaeobacter inhibens DSM 17395 PGA1_c19620 two-component system hybrid kinase sig. 35 26
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3258 DNA-binding heavy metal response regulator insig. 33 44
  Azospirillum brasilense Sp245 AZOBR_RS24855 histidine kinase insig. 29 43
  Azospirillum brasilense Sp245 AZOBR_RS11020 RNA polymerase subunit sigma-70 no data 28 41
  Phaeobacter inhibens DSM 17395 PGA1_c28680 putative bacteriophytochrome insig. 27 33
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF738 Autolysis response regulater LytR cofit 27 45
  Marinobacter adhaerens HP15 HP15_2093 signal transduction histidine kinase cofit 27 52
  Agrobacterium fabrum C58 Atu5509 two component sensor kinase/response regulator hybrid insig. 33 32
  Desulfovibrio vulgaris Miyazaki F DvMF_0392 integral membrane sensor hybrid histidine kinase (RefSeq) insig. 32 31
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2011 Transcriptional regulatory protein PhoP strong 32 42
  Azospirillum sp. SherDot2 MPMX19_01131 hypothetical protein no data 28 41
  Pseudomonas sp. RS175 PFR28_02307 hypothetical protein insig. 28 44
  Caulobacter crescentus NA1000 CCNA_03154 PAS-family sensor histidine kinase/receiver protein sig. 33 31
  Caulobacter crescentus NA1000 Δfur CCNA_03154 PAS-family sensor histidine kinase/receiver protein insig. 33 31
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS22235 response regulator insig. 32 35
  Cupriavidus basilensis FW507-4G11 RR42_RS17870 Fis family transcriptional regulator insig. 29 43
  Sphingobium sp. HT1-2 GFF2791 Two-component system sensor histidine kinase cofit 28 44
  Rhodanobacter denitrificans MT42 LRK55_RS17060 heavy metal response regulator transcription factor insig. 35 39
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02807 Signal transduction histidine kinase insig. 31 44
  Magnetospirillum magneticum AMB-1 AMB_RS24375 response regulator cofit 35 31
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS18990 response regulator insig. 30 47
  Sphingobium sp. HT1-2 GFF650 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) cofit 28 44
  Lysobacter sp. OAE881 ABIE51_RS14405 response regulator no data 28 40
  Sinorhizobium meliloti 1021 SM_b20934 two-component response regulator protein insig. 27 39
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS17290 DNA-binding response regulator insig. 33 33
  Ralstonia solanacearum UW163 UW163_RS21855 DNA-binding response regulator insig. 33 33
  Desulfovibrio vulgaris Miyazaki F DvMF_2109 two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) strong 25 47
  Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 54 15
  Variovorax sp. SCN45 GFF1998 Two-component system sensor histidine kinase insig. 35 24
  Pseudomonas sp. RS175 PFR28_00988 Sensor histidine kinase RcsC strong 32 43
  Variovorax sp. SCN45 GFF2709 hypothetical protein insig. 29 43
  Rhizobium sp. OAE497 ABIE40_RS13310 RNA polymerase sigma factor insig. 27 45