Homologs of PS417_08230 from Pseudomonas simiae WCS417

lipopolysaccharide biosynthesis protein RfbH
SEED: CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase (EC 4.2.1.-)
KEGG: CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_08230 lipopolysaccharide biosynthesis protein RfbH strong 100 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3894 CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase (EC 4.2.1.-) no data 74 100
o Variovorax sp. SCN45 GFF4637 CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase (EC 4.2.1.-) cofit 70 99
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4396 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis strong 33 84
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4104 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis insig. 35 74
  Azospirillum sp. SherDot2 MPMX19_06660 GDP-4-keto-6-deoxy-D-mannose 3-dehydratase insig. 32 84
  Magnetospirillum magneticum AMB-1 AMB_RS05480 DegT/DnrJ/EryC1/StrS family aminotransferase insig. 33 82
  Methanococcus maripaludis S2 MMP_RS01880 DegT/DnrJ/EryC1/StrS family aminotransferase strong 29 92
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS01760 aminotransferase DegT cofit 31 86
  Magnetospirillum magneticum AMB-1 AMB_RS04055 DegT/DnrJ/EryC1/StrS family aminotransferase insig. 32 78
  Escherichia coli ECRC100 OKFHMN_24430 rfbE GDP-perosamine synthase RfbE/PerA strong 30 92
  Escherichia coli ECRC101 MCAODC_20510 rfbE GDP-perosamine synthase RfbE/PerA no data 30 92
  Escherichia coli ECRC102 NIAGMN_22375 rfbE GDP-perosamine synthase RfbE/PerA no data 30 92
  Escherichia coli ECRC98 JDDGAC_28540 rfbE GDP-perosamine synthase RfbE/PerA strong 30 92
  Escherichia coli ECRC99 KEDOAH_03720 rfbE GDP-perosamine synthase RfbE/PerA no data 30 92
  Caulobacter crescentus NA1000 CCNA_01064 perosamine synthetase strong 31 78
  Caulobacter crescentus NA1000 Δfur CCNA_01064 perosamine synthetase cofit 31 78
  Synechocystis sp000284455 PCC 6803 SGL_RS09505 DegT/DnrJ/EryC1/StrS family aminotransferase insig. 33 76
  Vibrio cholerae E7946 ATCC 55056 CSW01_01285 perosamine synthetase strong 29 87
  Cellulophaga baltica 18 M666_RS14725 DegT/DnrJ/EryC1/StrS family aminotransferase insig. 38 61
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1858 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-) insig. 30 92
  Cupriavidus basilensis FW507-4G11 RR42_RS15735 pyridoxal phosphate-dependent aminotransferase strong 32 92
  Fusobacterium nucleatum SB010 HUW76_01355 DegT/DnrJ/EryC1/StrS family aminotransferase strong 30 85
  Escherichia coli BW25113 b2253 arnB uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq) insig. 30 92
  Shewanella sp. ANA-3 Shewana3_1908 DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) strong 35 67
  Escherichia coli BL21 ECD_02179 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent strong 30 92
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01458 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase insig. 30 92
  Escherichia coli ECRC62 BNILDI_13535 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase cofit 30 92
  Phaeobacter inhibens DSM 17395 PGA1_c02310 putative pyridoxal-phosphate-dependent aminotransferase insig. 30 81
  Escherichia coli ECOR27 NOLOHH_14620 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 29 92
  Escherichia coli ECOR38 HEPCGN_22210 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase sig. 29 92
  Shewanella oneidensis MR-1 SO2476 polysaccharide biosynthesis protein (NCBI ptt file) strong 34 67
  Escherichia coli Nissle 1917 ECOLIN_RS13125 UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 29 92
  Escherichia fergusonii Becca EFB2_01603 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase insig. 29 92
  Escherichia coli ECRC100 OKFHMN_22995 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase cofit 29 92
  Escherichia coli ECRC101 MCAODC_14035 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 29 92
  Escherichia coli ECRC102 NIAGMN_20765 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase cofit 29 92
  Escherichia coli ECRC98 JDDGAC_26960 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 29 92
  Escherichia coli ECRC99 KEDOAH_05200 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase no data 29 92
  Paraburkholderia sabiae LMG 24235 QEN71_RS22430 DegT/DnrJ/EryC1/StrS aminotransferase family protein no data 30 75
  Ralstonia solanacearum PSI07 RPSI07_RS04455 DegT/DnrJ/EryC1/StrS aminotransferase family protein strong 34 66
  Ralstonia solanacearum GMI1000 RS_RS21975 DegT/DnrJ/EryC1/StrS aminotransferase family protein strong 33 66
  Variovorax sp. OAS795 ABID97_RS02145 DegT/DnrJ/EryC1/StrS family aminotransferase strong 33 80
  Desulfovibrio vulgaris Hildenborough JW710 DVU3010 lpsC aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR) strong 31 92
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00805 dTDP-4-amino-4,6-dideoxygalactose transaminase no data 30 73
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS19145 DegT/DnrJ/EryC1/StrS aminotransferase family protein cofit 33 66
  Ralstonia solanacearum UW163 UW163_RS19985 DegT/DnrJ/EryC1/StrS aminotransferase family protein sig. 33 66
  Shewanella loihica PV-4 Shew_1858 DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) no data 37 54
  Serratia liquefaciens MT49 IAI46_11015 UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 32 81
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_02605 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase strong 30 81
  Paraburkholderia graminis OAS925 ABIE53_002021 dTDP-4-amino-4,6-dideoxygalactose transaminase no data 32 67
  Pectobacterium carotovorum WPP14 HER17_RS06520 UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 32 82
  Dickeya dianthicola ME23 DZA65_RS22610 UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 30 92
  Dickeya dianthicola 67-19 HGI48_RS21625 UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 30 92
  Erwinia amylovora T8 OLJFJH_17365 UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 30 87
  Burkholderia phytofirmans PsJN BPHYT_RS08930 aminotransferase DegT no data 29 76
  Herbaspirillum seropedicae SmR1 HSERO_RS21000 aminotransferase DegT strong 32 65
  Dickeya dadantii 3937 DDA3937_RS21390 UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 30 92
  Erwinia tracheiphila SCR3 LU632_RS16495 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase strong 30 81
  Enterobacter asburiae PDN3 EX28DRAFT_4082 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis insig. 30 81
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_12335 pyridoxal phosphate-dependent aminotransferase strong 30 80
  Rhodanobacter sp. FW510-T8 OKGIIK_10755 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase cofit 28 90
  Pseudomonas fluorescens FW300-N2E3 AO353_10490 aminotransferase DegT insig. 31 73
  Enterobacter sp. TBS_079 MPMX20_04380 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase insig. 31 81
  Shewanella amazonensis SB2B Sama_1641 polysaccharide biosynthesis protein (RefSeq) no data 32 63
  Pseudomonas simiae WCS417 PS417_27245 aminotransferase DegT strong 32 68
  Herbaspirillum seropedicae SmR1 HSERO_RS22070 CDP-4-keto-6-deoxy-D-glucose-3-dehydrase sig. 30 77
  Ralstonia sp. UNC404CL21Col ABZR87_RS22110 DegT/DnrJ/EryC1/StrS family aminotransferase insig. 29 76
  Pseudomonas fluorescens FW300-N2E3 AO353_25530 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase sig. 29 82
  Azospirillum sp. SherDot2 MPMX19_06587 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase cofit 28 93
  Synechococcus elongatus PCC 7942 Synpcc7942_0056 rfbE perosamine synthetase insig. 27 79
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05587 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase strong 32 72
  Synechocystis sp000284455 PCC 6803 SGL_RS03585 DegT/DnrJ/EryC1/StrS family aminotransferase strong 28 76
  Synechocystis sp000284455 PCC 6803 SGL_RS17895 DegT/DnrJ/EryC1/StrS family aminotransferase no data 26 89
  Herbaspirillum seropedicae SmR1 HSERO_RS10435 aminotransferase DegT no data 32 67
  Pseudomonas fluorescens SBW25 PFLU_RS28905 DegT/DnrJ/EryC1/StrS aminotransferase family protein cofit 31 67
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28905 DegT/DnrJ/EryC1/StrS aminotransferase family protein strong 31 67
  Rahnella sp. WP5 EX31_RS14020 UDP-4-amino-4-deoxy-L-arabinose aminotransferase cofit 30 83
  Klebsiella michiganensis M5al BWI76_RS26485 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase strong 30 81
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS07920 aminotransferase DegT cofit 27 86
  Pseudomonas fluorescens FW300-N2C3 AO356_03400 aminotransferase DegT strong 28 85
  Cupriavidus basilensis FW507-4G11 RR42_RS30905 aminotransferase DegT insig. 28 86
  Klebsiella pneumoniae MKP103 KDGMDA_07345 UDP-4-amino-4-deoxy-L-arabinose aminotransferase cofit 29 92
  Pseudomonas orientalis W4I3 QF045_RS01615 DegT/DnrJ/EryC1/StrS aminotransferase family protein insig. 33 60
  Fusobacterium nucleatum SB010 HUW76_01330 LegC family aminotransferase strong 30 83
  Pseudomonas fluorescens FW300-N2E3 AO353_08725 aminotransferase DegT sig. 32 59
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15850 DegT/DnrJ/EryC1/StrS aminotransferase family protein no data 31 66
  Ralstonia solanacearum UW163 UW163_RS13295 DegT/DnrJ/EryC1/StrS aminotransferase family protein no data 31 66
  Desulfovibrio vulgaris Miyazaki F DvMF_1891 Glutamine--scyllo-inositol transaminase (RefSeq) strong 28 84
  Klebsiella pneumoniae MRSN742743 KFA93_RS09800 arnB;go_function=transaminase UDP-4-amino-4-deoxy-L-arabinose aminotransferase insig. 29 81
  Ralstonia solanacearum PSI07 RPSI07_RS17515 DegT/DnrJ/EryC1/StrS aminotransferase family protein no data 30 69
  Pseudomonas fluorescens SBW25 PFLU_RS08185 DegT/DnrJ/EryC1/StrS aminotransferase family protein sig. 27 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS08185 DegT/DnrJ/EryC1/StrS aminotransferase family protein strong 27 85
  Ralstonia sp. UNC404CL21Col ABZR87_RS08725 DegT/DnrJ/EryC1/StrS aminotransferase family protein strong 33 58
  Pseudomonas syringae pv. syringae B728a Psyr_2689 DegT/DnrJ/EryC1/StrS aminotransferase insig. 31 80
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2689 DegT/DnrJ/EryC1/StrS aminotransferase insig. 31 80
  Bacteroides ovatus ATCC 8483 BACOVA_03734 DegT/DnrJ/EryC1/StrS aminotransferase family protein insig. 29 77
  Magnetospirillum magneticum AMB-1 AMB_RS00265 DegT/DnrJ/EryC1/StrS family aminotransferase no data 28 89
  Magnetospirillum magneticum AMB-1 AMB_RS00560 DegT/DnrJ/EryC1/StrS family aminotransferase no data 28 81
  Pseudomonas sp. RS175 PFR28_00930 GDP-perosamine synthase strong 32 60