Homologs of CCNA_01721 from Caulobacter crescentus NA1000

RNA polymerase ECF sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Caulobacter crescentus NA1000 CCNA_01721 RNA polymerase ECF sigma factor sig. 100 100
o Caulobacter crescentus NA1000 Δfur CCNA_01721 RNA polymerase ECF sigma factor insig. 100 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS03685 sigma-70 family RNA polymerase sigma factor insig. 64 91
  Caulobacter crescentus NA1000 CCNA_01718 RNA polymerase ECF sigma factor insig. 38 87
  Caulobacter crescentus NA1000 Δfur CCNA_01718 RNA polymerase ECF sigma factor cofit 38 87
  Bacteroides thetaiotaomicron VPI-5482 BT2044 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 32 88
  Bacteroides ovatus ATCC 8483 BACOVA_00669 Sigma-70 region 2 insig. 31 88
  Bacteroides stercoris CC31F HMPREF1181_RS08110 sigma-70 family RNA polymerase sigma factor insig. 30 88
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 34 86
  Shewanella amazonensis SB2B Sama_2611 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 30 88
  Phocaeicola dorei CL03T12C01 ABI39_RS09920 sigma-70 family RNA polymerase sigma factor insig. 27 92
  Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 29 91
  Rhodanobacter denitrificans MT42 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor insig. 29 90
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14290 sigma-70 family RNA polymerase sigma factor insig. 26 92
  Bosea sp. OAE506 ABIE41_RS10280 sigma-70 family RNA polymerase sigma factor insig. 33 87
  Paraburkholderia sabiae LMG 24235 QEN71_RS18240 RNA polymerase sigma factor insig. 31 90
  Rhodanobacter denitrificans MT42 LRK55_RS05200 sigma-70 family RNA polymerase sigma factor insig. 34 83
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS05425 sigma-70 family RNA polymerase sigma factor insig. 34 83
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 33 86
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS04580 sigma-70 family RNA polymerase sigma factor insig. 33 89
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3635.1 RNA polymerase ECF-type sigma factor insig. 30 80
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF365 RNA polymerase sigma factor insig. 35 88
  Acidovorax sp. GW101-3H11 Ac3H11_1622 RNA polymerase sigma factor insig. 31 91
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 29 95
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 31 87
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 31 87
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 31 87
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 31 87
  Cupriavidus basilensis FW507-4G11 RR42_RS15915 RNA polymerase subunit sigma-24 insig. 30 83
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07500 sigma-70 family RNA polymerase sigma factor insig. 27 90
  Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 31 91
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 27 87
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 30 88
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 30 88
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 30 88
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 30 88
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14945 RNA polymerase subunit sigma-24 strong 26 91
  Lysobacter sp. OAE881 ABIE51_RS16295 sigma-70 family RNA polymerase sigma factor insig. 32 85
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16905 sigma-70 family RNA polymerase sigma factor insig. 29 81
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22010 RNA polymerase sigma factor insig. 29 88
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 30 87
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19605 RNA polymerase insig. 28 84
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19950 RNA polymerase subunit sigma-24 insig. 26 96
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 26 93
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 29 89
  Rhodanobacter sp. FW510-T8 OKGIIK_13920 RNA polymerase subunit sigma insig. 28 86
  Shewanella oneidensis MR-1 SO3840 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 25 87
o Cellulophaga baltica 18 M666_RS10480 RNA polymerase sigma factor sig. 28 90
  Dinoroseobacter shibae DFL-12 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 30 91
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 29 88
  Cellulophaga baltica 18 M666_RS05270 sigma-70 family RNA polymerase sigma factor insig. 28 86
  Caulobacter crescentus NA1000 CCNA_00685 RNA polymerase sigma factor sig. 26 84
  Caulobacter crescentus NA1000 Δfur CCNA_00685 RNA polymerase sigma factor cofit 26 84
  Rhizobium sp. OAE497 ABIE40_RS26955 sigma-70 family RNA polymerase sigma factor insig. 30 85
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS04785 sigma-70 family RNA polymerase sigma factor insig. 28 93
  Marinobacter adhaerens HP15 HP15_p187g100 RNA polymerase sigma factor insig. 28 81
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 30 88
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS00075 RNA polymerase sigma factor cofit 29 84
  Cellulophaga baltica 18 M666_RS11420 RNA polymerase sigma factor insig. 25 81
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1733 RNA polymerase sigma factor, sigma-70 family insig. 31 86
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS18950 sigma-70 family RNA polymerase sigma factor insig. 31 79
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 30 91
  Phocaeicola dorei CL03T12C01 ABI39_RS12815 sigma-70 family RNA polymerase sigma factor insig. 28 81
  Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 27 79
  Pseudomonas simiae WCS417 PS417_11995 RNA polymerase sigma factor insig. 30 87
  Phaeobacter inhibens DSM 17395 PGA1_c27510 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' insig. 29 80
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS00445 sigma-70 family RNA polymerase sigma factor insig. 29 87
  Ralstonia solanacearum GMI1000 RS_RS14950 RNA polymerase sigma factor no data 34 82
  Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 29 81
  Variovorax sp. SCN45 GFF4503 RNA polymerase sigma factor insig. 30 90
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 28 87
  Methylophilus sp. DMC18 GFF2730 RNA polymerase sigma-H factor no data 27 88
  Ralstonia solanacearum PSI07 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor insig. 30 83
  Variovorax sp. OAS795 ABID97_RS08165 sigma-70 family RNA polymerase sigma factor insig. 29 82
  Rhodanobacter sp. FW510-T8 OKGIIK_14780 RNA polymerase subunit sigma-70 insig. 27 85
  Pseudomonas simiae WCS417 PS417_12610 RNA polymerase sigma factor sig. 29 87
  Ralstonia solanacearum PSI07 RPSI07_RS10230 RNA polymerase sigma factor no data 34 82
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 30 76
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15905 RNA polymerase sigma factor cofit 25 94
  Rhodospirillum rubrum S1H Rru_A2537 Sigma-24 (FecI) (NCBI) insig. 29 92
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 26 87
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12005 RNA polymerase sigma factor RpoE cofit 29 88
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21575 RNA polymerase subunit sigma insig. 27 91
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 25 89
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 32 80
  Rhodanobacter sp. FW510-T8 OKGIIK_01380 rpoE RNA polymerase subunit sigma-24 insig. 31 79
  Bifidobacterium breve UCC2003 BBR_RS15930 RNA polymerase sigma factor insig. 32 88
  Rhodanobacter denitrificans MT42 LRK55_RS04975 sigma-70 family RNA polymerase sigma factor cofit 30 85
  Pseudomonas sp. DMC3 GFF1392 ECF RNA polymerase sigma factor SigK cofit 29 82
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 31 83
  Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 31 83
  Shewanella amazonensis SB2B Sama_0874 RNA polymerase sigma factor RpoE (RefSeq) strong 28 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4220 RNA polymerase sigma factor RpoE insig. 27 86
  Alteromonas macleodii MIT1002 MIT1002_03807 Sigma-W factor insig. 25 88
  Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 28 87
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3183.1 RNA polymerase sigma factor RpoE insig. 28 87
  Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 27 87
  Kangiella aquimarina DSM 16071 B158DRAFT_2027 RNA polymerase sigma factor, sigma-70 family insig. 26 87
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 28 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2047 RNA polymerase sigma factor, sigma-70 family strong 27 82