Homologs of Shewana3_0763 from Shewanella sp. ANA-3

ECF subfamily RNA polymerase sigma-24 factor (RefSeq)
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 100 100
o Shewanella oneidensis MR-1 SO3840 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 91 100
o Shewanella loihica PV-4 Shew_2956 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 67 91
o Shewanella amazonensis SB2B Sama_2611 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 55 94
o Alteromonas macleodii MIT1002 MIT1002_03807 Sigma-W factor insig. 50 93
o Lysobacter sp. OAE881 ABIE51_RS16295 sigma-70 family RNA polymerase sigma factor insig. 41 95
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS04580 sigma-70 family RNA polymerase sigma factor insig. 43 97
o Rhodanobacter denitrificans MT42 LRK55_RS05200 sigma-70 family RNA polymerase sigma factor insig. 41 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS05425 sigma-70 family RNA polymerase sigma factor insig. 41 97
o Rhodanobacter sp. FW510-T8 OKGIIK_01380 rpoE RNA polymerase subunit sigma-24 insig. 43 97
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS18950 sigma-70 family RNA polymerase sigma factor insig. 43 84
o Kangiella aquimarina DSM 16071 B158DRAFT_2027 RNA polymerase sigma factor, sigma-70 family insig. 41 93
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3635.1 RNA polymerase ECF-type sigma factor insig. 41 84
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19950 RNA polymerase subunit sigma-24 insig. 36 92
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS00075 RNA polymerase sigma factor cofit 34 91
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19605 RNA polymerase insig. 33 91
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 32 88
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS13725 sigma-70 family RNA polymerase sigma factor strong 33 92
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19085 RNA polymerase subunit sigma-24 insig. 36 93
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 29 91
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05685 RNA polymerase subunit sigma-70 insig. 36 94
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 29 91
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 29 91
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 29 91
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 29 91
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 30 90
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 30 90
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 30 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 30 90
o Phocaeicola dorei CL03T12C01 ABI39_RS00235 sigma-70 family RNA polymerase sigma factor sig. 32 92
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 32 90
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS07720 sigma-70 family RNA polymerase sigma factor strong 32 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04530 sigma-70 family RNA polymerase sigma factor insig. 32 91
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 29 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15905 RNA polymerase sigma factor cofit 30 96
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 30 80
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 32 88
o Cellulophaga baltica 18 M666_RS08305 RNA polymerase sigma factor insig. 31 91
  Sinorhizobium meliloti 1021 SM_b20592 RNA polymerase sigma factor insig. 33 85
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15190 RNA polymerase sigma factor insig. 31 85
  Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 28 96
  Cellulophaga baltica 18 M666_RS05270 sigma-70 family RNA polymerase sigma factor insig. 31 94
  Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 31 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13165 RNA polymerase sigma factor insig. 28 86
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0603 RNA polymerase sigma factor, sigma-70 family sig. 34 91
  Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 28 96
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04435 RNA polymerase sigma factor insig. 30 91
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 28 96
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE strong 29 93
  Shewanella amazonensis SB2B Sama_0874 RNA polymerase sigma factor RpoE (RefSeq) strong 30 93
o Bacteroides thetaiotaomicron VPI-5482 BT4720 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) cofit 34 92
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07715 RNA polymerase sigma factor no data 30 85
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04025 RNA polymerase sigma factor insig. 29 96
  Cellulophaga baltica 18 M666_RS15960 RNA polymerase sigma factor insig. 29 91
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1733 RNA polymerase sigma factor, sigma-70 family insig. 32 93
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS23205 hypothetical protein insig. 34 86
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 99
  Fusobacterium nucleatum SB010 HUW76_07635 RNA polymerase sigma factor no data 32 80
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 29 91
  Phocaeicola dorei CL03T12C01 ABI39_RS12855 RNA polymerase sigma factor insig. 29 95
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16945 RNA polymerase sigma factor sig. 29 95
  Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 28 92
o Azospirillum brasilense Sp245 AZOBR_RS31600 RNA polymerase insig. 31 91
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22010 RNA polymerase sigma factor insig. 31 96
o Bacteroides ovatus ATCC 8483 BACOVA_04302 Sigma-70 region 2 insig. 32 91
  Cellulophaga baltica 18 M666_RS10480 RNA polymerase sigma factor sig. 31 92
  Herbaspirillum seropedicae SmR1 HSERO_RS12085 RNA polymerase sigma-E factor protein insig. 30 93
  Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 28 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0358 RNA polymerase sigma factor, sigma-70 family strong 33 86
  Bacteroides ovatus ATCC 8483 BACOVA_00098 RNA polymerase sigma-70 factor insig. 32 90
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2047 RNA polymerase sigma factor, sigma-70 family strong 28 95
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 28 93
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10600 RNA polymerase subunit sigma-24 strong 30 84
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 26 93
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 30 93
  Bacteroides thetaiotaomicron VPI-5482 BT4347 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 29 86
  Phocaeicola dorei CL03T12C01 ABI39_RS11710 RNA polymerase sigma factor insig. 34 89
o Bacteroides stercoris CC31F HMPREF1181_RS10740 sigma-70 family RNA polymerase sigma factor sig. 33 95
  Bacteroides thetaiotaomicron VPI-5482 BT4647 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 32 92
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12005 RNA polymerase sigma factor RpoE no data 31 93
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 30 93
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 30 93
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 28 95
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 28 96
  Bacteroides stercoris CC31F HMPREF1181_RS05860 sigma-70 family RNA polymerase sigma factor insig. 25 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4220 RNA polymerase sigma factor RpoE insig. 30 91
o Azospirillum sp. SherDot2 MPMX19_04274 RNA polymerase sigma-H factor insig. 33 79
  Cellulophaga baltica 18 M666_RS05355 sigma-70 family RNA polymerase sigma factor insig. 32 82
  Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 27 96
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15730 RNA polymerase sigma factor sig. 33 89
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 30 93
  Bacteroides ovatus ATCC 8483 BACOVA_05165 Sigma-70 region 2 insig. 28 86
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10790 RNA polymerase sigma factor insig. 28 90
o Magnetospirillum magneticum AMB-1 AMB_RS14160 RNA polymerase sigma factor cofit 31 99
  Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 31 99
  Rhodopseudomonas palustris CGA009 TX73_009355 sigma-70 family RNA polymerase sigma factor insig. 31 97
  Paraburkholderia sabiae LMG 24235 QEN71_RS18240 RNA polymerase sigma factor insig. 28 93
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 28 91
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2617 RNA polymerase sigma factor, sigma-70 family insig. 31 90
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 30 87