Homologs of Shew_1073 from Shewanella loihica PV-4

sigma 54 modulation protein/ribosomal protein S30EA (RefSeq)
SEED: Ribosome hibernation protein YfiA
KEGG: ribosome-associated inhibitor A

99 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_1073 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 100 100
o Shewanella amazonensis SB2B Sama_0899 ribosomal subunit interface protein (RefSeq) sig. 67 100
o Shewanella sp. ANA-3 Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein (RefSeq) strong 71 94
o Shewanella oneidensis MR-1 SO3422 yfiA-2 ribosomal subunit interface protein (NCBI ptt file) sig. 79 79
  Rahnella sp. WP5 EX31_RS07580 ribosome-associated translation inhibitor RaiA insig. 50 76
  Dickeya dadantii 3937 DDA3937_RS16120 ribosome-associated translation inhibitor RaiA insig. 47 76
  Pectobacterium carotovorum WPP14 HER17_RS05390 ribosome-associated translation inhibitor RaiA cofit 47 78
  Dickeya dianthicola 67-19 HGI48_RS16245 ribosome-associated translation inhibitor RaiA insig. 46 76
  Dickeya dianthicola ME23 DZA65_RS17340 ribosome-associated translation inhibitor RaiA insig. 46 76
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4180 Ribosome hibernation protein YfiA insig. 46 78
o Serratia liquefaciens MT49 IAI46_03975 ribosome-associated translation inhibitor RaiA insig. 42 85
  Escherichia coli BL21 ECD_02486 cold shock protein associated with 30S ribosomal subunit insig. 46 76
  Escherichia fergusonii Becca EFB2_01294 Ribosome-associated inhibitor A insig. 46 76
  Escherichia coli ECOR27 NOLOHH_12910 raiA ribosome-associated translation inhibitor RaiA insig. 46 76
  Escherichia coli ECOR38 HEPCGN_20355 raiA ribosome-associated translation inhibitor RaiA cofit 46 76
  Escherichia coli ECRC100 OKFHMN_21235 raiA ribosome-associated translation inhibitor RaiA cofit 46 76
  Escherichia coli ECRC101 MCAODC_11765 raiA ribosome-associated translation inhibitor RaiA insig. 46 76
  Escherichia coli ECRC102 NIAGMN_19005 raiA ribosome-associated translation inhibitor RaiA insig. 46 76
  Escherichia coli ECRC62 BNILDI_11715 raiA ribosome-associated translation inhibitor RaiA insig. 46 76
  Escherichia coli ECRC98 JDDGAC_24900 raiA ribosome-associated translation inhibitor RaiA cofit 46 76
  Escherichia coli ECRC99 KEDOAH_06985 raiA ribosome-associated translation inhibitor RaiA no data 46 76
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01110 Ribosome-associated inhibitor A insig. 46 76
  Escherichia coli Nissle 1917 ECOLIN_RS14690 ribosome-associated translation inhibitor RaiA no data 46 76
  Escherichia coli BW25113 b2597 yfiA cold shock protein associated with 30S ribosomal subunit (NCBI) strong 46 76
  Klebsiella michiganensis M5al BWI76_RS21460 translation inhibitor protein RaiA insig. 46 76
o Enterobacter asburiae PDN3 EX28DRAFT_2697 ribosomal subunit interface protein cofit 42 90
o Enterobacter sp. TBS_079 MPMX20_03465 Ribosome-associated inhibitor A insig. 42 90
o Pantoea sp. MT58 IAI47_04415 ribosome-associated translation inhibitor RaiA insig. 40 88
  Erwinia tracheiphila SCR3 LU632_RS16955 raiA ribosome-associated translation inhibitor RaiA insig. 41 79
  Vibrio cholerae E7946 ATCC 55056 CSW01_03685 ribosomal subunit interface protein insig. 48 76
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 41 73
  Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 41 67
  Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 41 67
  Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 38 81
  Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 38 81
  Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 36 67
  Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 34 73
  Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 33 80
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 36 81
  Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 36 81
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 36 81
  Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 36 69
  Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 34 77
  Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 39 72
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 39 72
  Paraburkholderia graminis OAS925 ABIE53_000717 putative sigma-54 modulation protein strong 29 85
  Variovorax sp. OAS795 ABID97_RS04490 ribosome-associated translation inhibitor RaiA insig. 29 79
  Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 33 77
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P insig. 28 85
  Cupriavidus basilensis FW507-4G11 RR42_RS02080 ribosome hibernation promoting factor sig. 31 81
  Burkholderia phytofirmans PsJN BPHYT_RS02900 ribosome hibernation promoting factor sig. 28 85
  Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 32 81
  Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 33 80
  Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 28 79
  Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 31 77
  Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 31 77
  Paraburkholderia sabiae LMG 24235 QEN71_RS01750 ribosome-associated translation inhibitor RaiA insig. 27 88
  Acidovorax sp. GW101-3H11 Ac3H11_681 Ribosome hibernation protein YhbH sig. 30 69
  Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 34 69
  Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor insig. 32 69
  Lysobacter sp. OAE881 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA cofit 34 67
  Ralstonia solanacearum PSI07 RPSI07_RS22135 ribosomal subunit interface protein strong 28 74
  Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 28 77
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2612 Ribosome hibernation protein YhbH strong 31 73
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA sig. 28 69
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11165 ribosomal subunit interface protein strong 27 74
  Ralstonia solanacearum GMI1000 RS_RS02015 ribosomal subunit interface protein strong 27 74
  Ralstonia solanacearum UW163 UW163_RS02415 ribosomal subunit interface protein sig. 27 74
  Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 28 69
  Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 27 79
  Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 31 72
  Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 28 69
  Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 27 69
  Ralstonia sp. UNC404CL21Col ABZR87_RS07055 ribosome-associated translation inhibitor RaiA strong 26 74
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 28 69
  Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 27 69
  Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 27 69
  Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 27 69
  Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 27 69
  Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor cofit 27 69
  Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor cofit 27 69
  Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 27 69
  Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 27 69
  Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 27 69
  Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 27 69
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 27 69
  Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 27 69
  Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 27 69
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1661.1 Ribosome hibernation protein YhbH insig. 28 84
  Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 29 69
  Shewanella loihica PV-4 Shew_1241 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) no data 27 87
  Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 26 69
  Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 28 69
  Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 28 69
  Shewanella oneidensis MR-1 SO3403 yfiA-1 ribosomal subunit interface protein (NCBI ptt file) no data 23 92
  Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 27 69
  Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 27 69
  Acinetobacter radioresistens SK82 MPMX26_02591 Ribosome hibernation promoting factor no data 29 67
  Klebsiella michiganensis M5al BWI76_RS25270 ribosome hibernation promoting factor sig. 25 69