Homologs of DVU1858 from Desulfovibrio vulgaris Hildenborough JW710

cold shock domain protein (TIGR)
SEED: Cold shock domain family protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Desulfovibrio vulgaris Hildenborough JW710 DVU1858 cold shock domain protein (TIGR) insig. 100 100
o Shewanella amazonensis SB2B Sama_3103 cold-shock DNA-binding domain-containing protein (RefSeq) insig. 36 98
o Rhodanobacter denitrificans MT42 LRK55_RS18020 cold shock domain-containing protein insig. 34 99
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00025 cold shock domain-containing protein sig. 34 99
o Shewanella oneidensis MR-1 SO0733 cold shock domain family protein (NCBI ptt file) insig. 33 98
o Shewanella loihica PV-4 Shew_0485 cold-shock DNA-binding domain-containing protein (RefSeq) insig. 31 98
o Shewanella sp. ANA-3 Shewana3_3544 cold-shock DNA-binding protein family protein (RefSeq) sig. 30 99
o Acidovorax sp. GW101-3H11 Ac3H11_3397 Conserved domain protein insig. 30 97
  Shewanella loihica PV-4 Shew_3072 cold-shock protein, DNA-binding (RefSeq) insig. 27 97
  Kangiella aquimarina DSM 16071 B158DRAFT_2245 Predicted membrane protein insig. 50 29
  Alteromonas macleodii MIT1002 MIT1002_03661 cold shock-like protein CspD insig. 30 54
  Pseudomonas stutzeri RCH2 Psest_0769 Predicted membrane protein sig. 54 30
  Lysobacter sp. OAE881 ABIE51_RS13800 cold-shock protein strong 47 36
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3660.1 Cold shock protein CspD insig. 46 37
  Pseudomonas sp. S08-1 OH686_00735 Cold-shock DNA-binding domain insig. 39 42
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2336.1 putative membrane protein insig. 36 39
  Rhodanobacter denitrificans MT42 LRK55_RS16740 cold-shock protein no data 45 35
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS17025 cold-shock protein insig. 45 35
  Sinorhizobium meliloti 1021 SMa0181 CspA5 cold shock protein transcriptional regulator no data 39 37
  Dechlorosoma suillum PS Dsui_0007 cold shock protein insig. 44 35
  Rhizobium sp. OAE497 ABIE40_RS29240 cold-shock protein insig. 44 35
  Pseudomonas simiae WCS417 PS417_19715 cold-shock protein no data 42 36
  Acinetobacter radioresistens SK82 MPMX26_02852 hypothetical protein insig. 34 58
  Rhodanobacter sp. FW510-T8 OKGIIK_07815 cspC cold-shock protein no data 44 35
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04820 cold-shock protein no data 41 35
  Ralstonia solanacearum UW163 UW163_RS08850 cold-shock protein no data 41 35
  Ralstonia solanacearum PSI07 RPSI07_RS12565 cold-shock protein no data 40 35
  Rhizobium sp. OAE497 ABIE40_RS19865 cold-shock protein sig. 38 36
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07090 cold-shock protein no data 44 35
  Herbaspirillum seropedicae SmR1 HSERO_RS07020 cold-shock protein no data 41 35
  Rhizobium sp. OAE497 ABIE40_RS27285 cold-shock protein insig. 38 35
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS18735 cold-shock protein insig. 41 35
  Ralstonia solanacearum GMI1000 RS_RS22215 cold-shock protein sig. 41 35
  Ralstonia solanacearum PSI07 RPSI07_RS04860 cold-shock protein no data 41 35
  Ralstonia solanacearum UW163 UW163_RS20395 cold-shock protein insig. 41 35
  Ralstonia solanacearum GMI1000 RS_RS12380 cold-shock protein no data 40 35
  Cupriavidus basilensis FW507-4G11 RR42_RS17115 cold-shock protein no data 43 34
  Ralstonia sp. UNC404CL21Col ABZR87_RS19675 cold-shock protein insig. 41 34
  Cupriavidus basilensis FW507-4G11 RR42_RS20855 cold-shock protein sig. 38 35
  Castellaniella sp019104865 MT123 ABCV34_RS05315 cold-shock protein insig. 40 33
  Mycobacterium tuberculosis H37Rv Rv3648c Probable cold shock protein A CspA no data 40 37
  Castellaniella sp019104865 MT123 ABCV34_RS11730 cold-shock protein cofit 43 37
  Herbaspirillum seropedicae SmR1 HSERO_RS15195 cold-shock protein no data 41 34
  Agrobacterium fabrum C58 Atu4214 cold shock protein sig. 40 36
  Sinorhizobium meliloti 1021 SMa0738 CspA6 cold shock protein transcriptional regulator insig. 40 36
  Burkholderia phytofirmans PsJN BPHYT_RS15720 cold-shock protein no data 39 35
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04084 cold-shock DNA-binding protein family no data 39 35
  Paraburkholderia graminis OAS925 ABIE53_003308 CspA family cold shock protein no data 39 35
  Enterobacter asburiae PDN3 EX28DRAFT_2340 Cold shock proteins no data 39 35
  Enterobacter sp. TBS_079 MPMX20_01283 Cold shock-like protein CspE sig. 39 35
  Dickeya dadantii 3937 DDA3937_RS06115 transcription antiterminator/RNA stability regulator CspE no data 39 35
  Dickeya dianthicola 67-19 HGI48_RS06165 transcription antiterminator/RNA stability regulator CspE no data 39 35
  Dickeya dianthicola ME23 DZA65_RS06510 transcription antiterminator/RNA stability regulator CspE insig. 39 35
  Paraburkholderia sabiae LMG 24235 QEN71_RS02995 cold shock domain-containing protein CspD sig. 39 35
  Pantoea sp. MT58 IAI47_14075 transcription antiterminator/RNA stability regulator CspE sig. 39 35
  Pectobacterium carotovorum WPP14 HER17_RS15290 transcription antiterminator/RNA stability regulator CspE cofit 40 37
  Ralstonia sp. UNC404CL21Col ABZR87_RS00445 cold-shock protein strong 39 35
  Escherichia coli BL21 ECD_00593 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein insig. 38 35
  Escherichia fergusonii Becca EFB2_03468 Cold shock-like protein CspE insig. 38 35
  Escherichia coli ECOR27 NOLOHH_23795 cspE transcription antiterminator/RNA stability regulator CspE insig. 38 35
  Escherichia coli ECOR38 HEPCGN_00855 cspE transcription antiterminator/RNA stability regulator CspE cofit 38 35
  Escherichia coli ECRC101 OKFHMN_07420 cspE transcription antiterminator/RNA stability regulator CspE strong 38 35
  Escherichia coli ECRC101 MCAODC_26635 cspE transcription antiterminator/RNA stability regulator CspE sig. 38 35
  Escherichia coli ECRC102 NIAGMN_05475 cspE transcription antiterminator/RNA stability regulator CspE sig. 38 35
  Escherichia coli ECRC62 BNILDI_21805 cspE transcription antiterminator/RNA stability regulator CspE insig. 38 35
  Escherichia coli ECRC98 JDDGAC_11065 cspE transcription antiterminator/RNA stability regulator CspE no data 38 35
  Escherichia coli ECRC99 KEDOAH_20550 cspE transcription antiterminator/RNA stability regulator CspE no data 38 35
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03082 Cold shock-like protein CspE strong 38 35
  Escherichia coli Nissle 1917 ECOLIN_RS03400 transcription antiterminator/RNA stability regulator CspE cofit 38 35
  Escherichia coli BW25113 b0623 cspE cold shock protein E (NCBI) strong 38 35
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01154 cold-shock DNA-binding protein family no data 36 36
  Paraburkholderia graminis OAS925 ABIE53_002280 CspA family cold shock protein no data 36 36
  Rahnella sp. WP5 EX31_RS23030 transcription antiterminator/RNA stability regulator CspE sig. 39 35
  Burkholderia phytofirmans PsJN BPHYT_RS10920 cold-shock protein no data 39 35
  Serratia liquefaciens MT49 IAI46_05870 transcription antiterminator/RNA stability regulator CspE insig. 39 35
  Bosea sp. OAE506 ABIE41_RS08495 cold shock domain-containing protein insig. 43 36
  Klebsiella michiganensis M5al BWI76_RS07980 cold-shock protein no data 39 35
  Variovorax sp. OAS795 ABID97_RS14410 cold shock and DUF1294 domain-containing protein insig. 38 37
  Erwinia tracheiphila SCR3 LU632_RS16440 cspE transcription antiterminator/RNA stability regulator CspE no data 36 35
  Paraburkholderia sabiae LMG 24235 QEN71_RS36275 cold-shock protein no data 34 35
  Paraburkholderia sabiae LMG 24235 QEN71_RS39145 cold-shock protein no data 33 36
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4536 Cold shock protein CspE no data 38 35
  Azospirillum brasilense Sp245 AZOBR_RS16435 cold-shock protein insig. 37 33
  Dechlorosoma suillum PS Dsui_2659 cold shock protein cofit 36 36
  Azospirillum sp. SherDot2 MPMX19_02116 Cold shock protein CspA insig. 48 24
  Dickeya dadantii 3937 DDA3937_RS19755 cold-shock protein insig. 43 34
  Dickeya dianthicola 67-19 HGI48_RS19865 cold-shock protein no data 43 34
  Dickeya dianthicola ME23 DZA65_RS20940 cold-shock protein insig. 43 34
  Herbaspirillum seropedicae SmR1 HSERO_RS02505 cold-shock protein no data 39 38
  Burkholderia phytofirmans PsJN BPHYT_RS17545 cold-shock protein sig. 32 36
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05686 cold-shock DNA-binding protein family no data 32 36
  Paraburkholderia graminis OAS925 ABIE53_003669 CspA family cold shock protein strong 32 36
  Rhodospirillum rubrum S1H Rru_A1914 Cold-shock DNA-binding domain protein (NCBI) insig. 44 27
  Enterobacter sp. TBS_079 MPMX20_02529 Cold shock protein CspA sig. 41 27
  Enterobacter asburiae PDN3 EX28DRAFT_2409 Cold shock proteins no data 44 27
  Sinorhizobium meliloti 1021 SMa0126 CspA8 Cold shock family protein insig. 60 17
  Burkholderia phytofirmans PsJN BPHYT_RS34185 cold-shock protein sig. 35 35
  Klebsiella michiganensis M5al BWI76_RS26980 cold-shock protein sig. 42 26
  Paraburkholderia graminis OAS925 ABIE53_004735 CspA family cold shock protein strong 36 34
  Ralstonia sp. UNC404CL21Col ABZR87_RS16270 cold-shock protein strong 35 35