Homologs of SO0036 from Shewanella oneidensis MR-1

topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file)
SEED: Similar to C-terminal Zn-finger domain of DNA topoisomerase I
KEGG: putative DNA topoisomerase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) sig. 100 100
o Shewanella sp. ANA-3 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 96 99
o Shewanella amazonensis SB2B Sama_0048 topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) insig. 81 99
o Shewanella loihica PV-4 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 82 99
o Alteromonas macleodii MIT1002 MIT1002_00024 DNA topoisomerase 1 cofit 51 98
o Vibrio cholerae E7946 ATCC 55056 CSW01_00255 DNA topoisomerase insig. 52 98
o Enterobacter asburiae PDN3 EX28DRAFT_0044 Zn-finger domain associated with topoisomerase type I cofit 46 93
o Enterobacter sp. TBS_079 MPMX20_04191 DNA topoisomerase 1 sig. 45 93
o Klebsiella michiganensis M5al BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein sig. 46 87
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I insig. 45 87
o Pantoea sp. MT58 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein sig. 47 87
o Escherichia fergusonii Becca EFB2_00540 DNA topoisomerase 1 cofit 44 87
o Escherichia coli ECOR27 NOLOHH_09345 yrdD Uncharacterized protein YrdD cofit 44 87
o Escherichia coli ECOR38 HEPCGN_16375 yrdD Uncharacterized protein YrdD cofit 44 87
o Escherichia coli ECRC62 BNILDI_02175 yrdD Uncharacterized protein YrdD insig. 44 87
o Escherichia coli Nissle 1917 ECOLIN_RS18850 type I DNA topoisomerase cofit 44 87
o Escherichia coli BL21 ECD_03134 ssDNA-binding protein, function unknown cofit 44 87
o Escherichia coli ECRC101 OKFHMN_17555 yrdD Uncharacterized protein YrdD insig. 44 87
o Escherichia coli ECRC101 MCAODC_08075 yrdD Uncharacterized protein YrdD insig. 44 87
o Escherichia coli ECRC102 NIAGMN_15315 yrdD Uncharacterized protein YrdD insig. 44 87
o Escherichia coli ECRC98 JDDGAC_21175 yrdD Uncharacterized protein YrdD no data 44 87
o Escherichia coli ECRC99 KEDOAH_10595 yrdD Uncharacterized protein YrdD no data 44 87
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00420 DNA topoisomerase 1 insig. 44 87
o Escherichia coli BW25113 b3283 yrdD predicted DNA topoisomerase (NCBI) sig. 44 87
o Erwinia tracheiphila SCR3 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 43 87
o Pectobacterium carotovorum WPP14 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein cofit 43 88
o Serratia liquefaciens MT49 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 43 87
o Rahnella sp. WP5 EX31_RS15960 hypothetical protein insig. 43 88
o Dickeya dadantii 3937 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 41 88
o Dickeya dianthicola ME23 DZA65_RS20325 hypothetical protein insig. 40 88
o Dickeya dianthicola 67-19 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 40 88
  Desulfovibrio vulgaris Hildenborough JW710 DVU3389 topA DNA topoisomerase I (TIGR) no data 39 88
  Desulfovibrio vulgaris Miyazaki F DvMF_2069 DNA topoisomerase I (RefSeq) no data 37 88
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 46 46
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 46 46
  Rhodopseudomonas palustris CGA009 TX73_016155 type I DNA topoisomerase strong 42 44
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 30 63
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 30 63
  Phaeobacter inhibens DSM 17395 PGA1_c06220 DNA topoisomerase TopA no data 38 44
  Marinobacter adhaerens HP15 HP15_1186 DNA topoisomerase III insig. 35 48
  Caulobacter crescentus NA1000 CCNA_02535 DNA topoisomerase I insig. 44 36
  Caulobacter crescentus NA1000 Δfur CCNA_02535 DNA topoisomerase I no data 44 36
  Rhizobium sp. OAE497 ABIE40_RS07355 type I DNA topoisomerase sig. 41 36
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04230 type I DNA topoisomerase no data 35 47
  Sinorhizobium meliloti 1021 SMc01364 DNA topoisomerase I insig. 36 36
  Dechlorosoma suillum PS Dsui_2608 topoisomerase IA cofit 30 51
  Agrobacterium fabrum C58 Atu1304 DNA topoisomerase I no data 41 36
  Rhodospirillum rubrum S1H Rru_A3202 DNA topoisomerase (NCBI) strong 29 51
  Bosea sp. OAE506 ABIE41_RS17240 type I DNA topoisomerase no data 38 36
  Azospirillum sp. SherDot2 MPMX19_01509 DNA topoisomerase 1 no data 38 40
  Dinoroseobacter shibae DFL-12 Dshi_1137 DNA topoisomerase I (RefSeq) no data 42 27
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 38 36
  Azospirillum brasilense Sp245 AZOBR_RS15890 DNA topoisomerase I strong 31 48
  Dinoroseobacter shibae DFL-12 Dshi_1137 DNA topoisomerase I (RefSeq) no data 34 62
  Magnetospirillum magneticum AMB-1 AMB_RS03505 type I DNA topoisomerase no data 40 36
  Pseudomonas syringae pv. syringae B728a Psyr_3287 DNA topoisomerase I strong 32 63
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3287 DNA topoisomerase I no data 32 63
  Alteromonas macleodii MIT1002 MIT1002_01705 DNA topoisomerase 1 no data 27 71
  Pseudomonas fluorescens FW300-N2C3 AO356_02315 DNA topoisomerase I strong 30 43
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) no data 30 43
  Pseudomonas fluorescens SBW25 PFLU_RS07665 type I DNA topoisomerase strong 29 43
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07665 type I DNA topoisomerase strong 29 43
  Pseudomonas simiae WCS417 PS417_07590 DNA topoisomerase I no data 29 43
  Pseudomonas sp. RS175 PFR28_01113 DNA topoisomerase 1 strong 30 43
  Pseudomonas sp. S08-1 OH686_21940 DNA topoisomerase I no data 34 53
  Pseudomonas sp. RS175 PFR28_01113 DNA topoisomerase 1 strong 34 53
  Pseudomonas syringae pv. syringae B728a Psyr_3287 DNA topoisomerase I strong 29 43
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3287 DNA topoisomerase I no data 29 43
  Pseudomonas sp. S08-1 OH686_21940 DNA topoisomerase I no data 29 43
  Pseudomonas stutzeri RCH2 Psest_2651 DNA topoisomerase I, bacterial strong 28 43
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 35 32
  Pseudomonas fluorescens FW300-N2C3 AO356_02315 DNA topoisomerase I strong 33 53
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) no data 33 53
  Acinetobacter radioresistens SK82 MPMX26_00365 DNA topoisomerase 1 no data 28 61
  Pseudomonas putida KT2440 PP_2139 DNA topoisomerase I no data 28 43
  Escherichia coli BL21 ECD_01250 DNA topoisomerase I, omega subunit strong 26 71
  Escherichia fergusonii Becca EFB2_02653 DNA topoisomerase 1 strong 26 71
  Escherichia coli ECOR27 NOLOHH_20270 type I DNA topoisomerase no data 26 71
  Escherichia coli ECOR38 HEPCGN_25595 type I DNA topoisomerase cofit 26 71
  Escherichia coli ECRC101 OKFHMN_02605 type I DNA topoisomerase no data 26 71
  Escherichia coli ECRC101 MCAODC_15660 type I DNA topoisomerase no data 26 71
  Escherichia coli ECRC102 NIAGMN_26775 type I DNA topoisomerase no data 26 71
  Escherichia coli ECRC62 BNILDI_18420 type I DNA topoisomerase no data 26 71
  Escherichia coli ECRC98 JDDGAC_05150 type I DNA topoisomerase no data 26 71
  Escherichia coli ECRC99 KEDOAH_26160 type I DNA topoisomerase no data 26 71
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02410 DNA topoisomerase 1 strong 26 71
  Escherichia coli Nissle 1917 ECOLIN_RS07675 type I DNA topoisomerase no data 26 71
  Escherichia coli BW25113 b1274 topA DNA topoisomerase I (NCBI) no data 26 71
  Caulobacter crescentus NA1000 CCNA_02535 DNA topoisomerase I insig. 34 32
  Caulobacter crescentus NA1000 Δfur CCNA_02535 DNA topoisomerase I no data 34 32
  Alteromonas macleodii MIT1002 MIT1002_01705 DNA topoisomerase 1 no data 27 74
  Fusobacterium nucleatum SB010 HUW76_06805 type I DNA topoisomerase no data 26 40
  Marinobacter adhaerens HP15 HP15_1514 DNA topoisomerase I no data 25 71
  Pseudomonas fluorescens FW300-N2E3 AO353_00495 DNA topoisomerase I strong 29 43
  Magnetospirillum magneticum AMB-1 AMB_RS03505 type I DNA topoisomerase no data 40 22
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4038 DNA topoisomerase I (EC 5.99.1.2) strong 29 43
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3906 DNA topoisomerase I (EC 5.99.1.2) strong 29 43
  Pseudomonas fluorescens FW300-N2E3 AO353_00495 DNA topoisomerase I strong 33 53
  Pseudomonas syringae pv. syringae B728a Psyr_3287 DNA topoisomerase I strong 25 71
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3287 DNA topoisomerase I no data 25 71