Homologs of erfK from Escherichia coli BW25113

erfK: conserved protein with NAD(P)-binding Rossmann-fold domain (NCBI)
SEED: L,D-transpeptidase ErfK

205 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Escherichia coli BL21 ECD_01899 L,D-transpeptidase linking Lpp to murein sig. 100 100
  Escherichia coli BW25113 b1990 erfK conserved protein with NAD(P)-binding Rossmann-fold domain (NCBI) insig. 100 100
o Escherichia coli ECOR27 NOLOHH_16050 ldtA L,D-transpeptidase insig. 99 100
o Escherichia coli ECRC62 BNILDI_14880 ldtA L,D-transpeptidase cofit 99 100
o Escherichia coli ECRC100 OKFHMN_25140 ldtA L,D-transpeptidase insig. 99 100
o Escherichia coli ECRC101 MCAODC_20250 ldtA L,D-transpeptidase insig. 99 100
o Escherichia coli ECRC102 NIAGMN_22645 ldtA L,D-transpeptidase insig. 99 100
o Escherichia coli ECRC98 JDDGAC_29270 ldtA L,D-transpeptidase insig. 99 100
o Escherichia coli ECRC99 KEDOAH_02970 ldtA L,D-transpeptidase no data 99 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01718 putative L,D-transpeptidase ErfK/SrfK insig. 98 100
o Escherichia fergusonii Becca EFB2_01899 putative L,D-transpeptidase ErfK/SrfK insig. 97 100
o Escherichia coli ECOR38 HEPCGN_03475 ldtA L,D-transpeptidase insig. 97 100
o Escherichia coli Nissle 1917 ECOLIN_RS11615 L,D-transpeptidase insig. 97 100
o Klebsiella michiganensis M5al BWI76_RS18620 L,D-transpeptidase insig. 84 97
o Klebsiella pneumoniae MKP103 KDGMDA_25735 L D-transpeptidase insig. 80 99
o Klebsiella pneumoniae MRSN742743 GJGHJB_01736 ldtA L D-transpeptidase insig. 80 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3970 L,D-transpeptidase YbiS insig. 80 98
o Enterobacter sp. TBS_079 MPMX20_02985 putative L,D-transpeptidase ErfK/SrfK insig. 78 98
o Enterobacter asburiae PDN3 EX28DRAFT_0563 Uncharacterized protein conserved in bacteria insig. 76 95
  Klebsiella pneumoniae MKP103 KDGMDA_17285 L D-transpeptidase strong 65 96
  Klebsiella pneumoniae MRSN742743 GJGHJB_03398 ldtB L D-transpeptidase strong 65 96
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF716 L,D-transpeptidase YbiS cofit 66 95
  Klebsiella michiganensis M5al BWI76_RS09030 transpeptidase strong 65 95
  Escherichia coli BL21 ECD_00786 L,D-transpeptidase linking Lpp to murein strong 64 95
  Escherichia fergusonii Becca EFB2_03286 putative L,D-transpeptidase YbiS cofit 64 95
  Escherichia coli ECOR27 NOLOHH_22515 ldtB L,D-transpeptidase strong 64 95
  Escherichia coli ECOR38 HEPCGN_01875 ldtB L,D-transpeptidase strong 64 95
  Escherichia coli ECRC100 OKFHMN_06165 ldtB L,D-transpeptidase cofit 64 95
  Escherichia coli ECRC101 MCAODC_25380 ldtB L,D-transpeptidase strong 64 95
  Escherichia coli ECRC102 NIAGMN_04210 ldtB L,D-transpeptidase cofit 64 95
  Escherichia coli ECRC62 BNILDI_20795 ldtB L,D-transpeptidase strong 64 95
  Escherichia coli ECRC98 JDDGAC_09800 ldtB L,D-transpeptidase strong 64 95
  Escherichia coli ECRC99 KEDOAH_21745 ldtB L,D-transpeptidase no data 64 95
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02894 putative L,D-transpeptidase YbiS cofit 64 95
  Escherichia coli Nissle 1917 ECOLIN_RS04365 L,D-transpeptidase no data 64 95
  Escherichia coli BW25113 b0819 ybiS hypothetical protein (NCBI) strong 64 95
  Pantoea sp. MT58 IAI47_13415 L,D-transpeptidase family protein strong 61 98
  Enterobacter asburiae PDN3 EX28DRAFT_2148 Uncharacterized protein conserved in bacteria strong 64 95
  Dickeya dadantii 3937 DDA3937_RS03570 L,D-transpeptidase family protein sig. 63 98
  Serratia liquefaciens MT49 IAI46_02600 L,D-transpeptidase family protein insig. 62 95
  Enterobacter sp. TBS_079 MPMX20_01456 putative L,D-transpeptidase YbiS sig. 63 95
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS13525 L,D-transpeptidase family protein cofit 60 98
  Dickeya dianthicola ME23 DZA65_RS03790 L,D-transpeptidase family protein insig. 62 98
  Dickeya dianthicola 67-19 HGI48_RS03670 L,D-transpeptidase family protein strong 62 98
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_19675 L D-transpeptidase cofit 58 100
  Erwinia tracheiphila SCR3 LU632_RS09245 L,D-transpeptidase family protein strong 58 100
  Pectobacterium carotovorum WPP14 HER17_RS17580 L,D-transpeptidase family protein cofit 62 91
  Erwinia amylovora T8 OLJFJH_16675 L D-transpeptidase strong 59 99
  Rahnella sp. WP5 EX31_RS10780 L,D-transpeptidase family protein sig. 60 97
  Shewanella oneidensis MR-1 SO3748 LysM domain protein (NCBI ptt file) strong 61 94
  Shewanella amazonensis SB2B Sama_0726 ErfK/YbiS/YcfS/YnhG (RefSeq) strong 59 96
  Shewanella sp. ANA-3 Shewana3_0844 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) strong 61 94
  Rahnella sp. WP5 EX31_RS13880 L,D-transpeptidase family protein insig. 54 99
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS11020 L,D-transpeptidase family protein cofit 56 94
  Dickeya dadantii 3937 DDA3937_RS12750 L,D-transpeptidase family protein insig. 53 98
  Pectobacterium carotovorum WPP14 HER17_RS08950 L,D-transpeptidase family protein cofit 53 98
  Pantoea sp. MT58 IAI47_10850 L,D-transpeptidase family protein sig. 55 94
  Dickeya dianthicola 67-19 HGI48_RS12815 L,D-transpeptidase family protein insig. 52 98
  Dickeya dianthicola ME23 DZA65_RS13280 L,D-transpeptidase family protein insig. 52 98
  Serratia liquefaciens MT49 IAI46_11175 L,D-transpeptidase family protein sig. 53 98
  Escherichia coli ECOR27 NOLOHH_21000 ldtC L,D-transpeptidase LdtC insig. 50 90
  Escherichia coli ECOR38 HEPCGN_24010 ldtC L,D-transpeptidase LdtC insig. 50 90
  Escherichia coli ECRC100 OKFHMN_03475 ldtC L,D-transpeptidase LdtC insig. 50 90
  Escherichia coli ECRC101 MCAODC_22835 ldtC L,D-transpeptidase LdtC insig. 50 90
  Escherichia coli ECRC102 NIAGMN_24355 ldtC L,D-transpeptidase LdtC insig. 50 90
  Escherichia coli ECRC62 BNILDI_19165 ldtC L,D-transpeptidase LdtC insig. 50 90
  Escherichia coli ECRC98 JDDGAC_07135 ldtC L,D-transpeptidase LdtC insig. 50 90
  Escherichia coli ECRC99 KEDOAH_24280 ldtC L,D-transpeptidase LdtC no data 50 90
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02553 putative L,D-transpeptidase YcfS insig. 50 90
  Klebsiella michiganensis M5al BWI76_RS11200 transpeptidase insig. 46 99
  Escherichia coli BL21 ECD_01109 L,D-transpeptidase linking Lpp to murein insig. 49 90
  Escherichia coli BW25113 b1113 ycfS hypothetical protein (NCBI) insig. 49 90
  Escherichia fergusonii Becca EFB2_02862 putative L,D-transpeptidase YcfS insig. 49 90
  Escherichia coli Nissle 1917 ECOLIN_RS06420 L,D-transpeptidase LdtC insig. 49 90
  Enterobacter sp. TBS_079 MPMX20_01794 putative L,D-transpeptidase YcfS insig. 49 91
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3396 L,D-transpeptidase YcfS insig. 48 96
  Enterobacter asburiae PDN3 EX28DRAFT_1817 Uncharacterized protein conserved in bacteria insig. 49 91
  Klebsiella pneumoniae MKP103 KDGMDA_18795 L D-transpeptidase insig. 50 91
  Klebsiella pneumoniae MRSN742743 GJGHJB_03141 erfK L D-transpeptidase insig. 50 91
  Klebsiella pneumoniae MKP103 KDGMDA_24140 murein L D-transpeptidase insig. 47 99
  Klebsiella pneumoniae MRSN742743 GJGHJB_02045 erfK L D-transpeptidase YnhG insig. 47 99
  Enterobacter asburiae PDN3 EX28DRAFT_1681 Uncharacterized protein conserved in bacteria insig. 47 92
  Enterobacter sp. TBS_079 MPMX20_01949 putative L,D-transpeptidase YnhG insig. 46 93
  Shewanella loihica PV-4 Shew_1006 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) strong 46 92
  Escherichia coli ECOR27 NOLOHH_17800 ldtE L,D-transpeptidase LdtE insig. 45 99
  Escherichia coli BL21 ECD_01647 murein L,D-transpeptidase no data 45 99
  Escherichia fergusonii Becca EFB2_02314 putative L,D-transpeptidase YnhG insig. 45 99
  Escherichia coli ECRC100 OKFHMN_27280 ldtE L,D-transpeptidase LdtE insig. 45 99
  Escherichia coli ECRC101 MCAODC_18130 ldtE L,D-transpeptidase LdtE insig. 45 99
  Escherichia coli ECRC102 NIAGMN_00785 ldtE L,D-transpeptidase LdtE insig. 45 99
  Escherichia coli ECRC98 JDDGAC_01855 ldtE L,D-transpeptidase LdtE insig. 45 99
  Escherichia coli ECRC99 KEDOAH_00830 ldtE L,D-transpeptidase LdtE no data 45 99
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02046 putative L,D-transpeptidase YnhG insig. 45 99
  Escherichia coli Nissle 1917 ECOLIN_RS09385 L,D-transpeptidase LdtE insig. 45 99
  Escherichia coli BW25113 b1678 ynhG hypothetical protein (NCBI) insig. 45 99
  Escherichia coli ECRC62 BNILDI_16590 ldtE L,D-transpeptidase LdtE insig. 45 99
  Escherichia coli ECOR38 HEPCGN_05665 ldtE L,D-transpeptidase LdtE insig. 45 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3564 L,D-transpeptidase YnhG insig. 45 98
  Klebsiella michiganensis M5al BWI76_RS16970 murein L,D-transpeptidase sig. 46 92
  Vibrio cholerae E7946 ATCC 55056 CSW01_14325 peptidase sig. 41 96
  Pseudomonas syringae pv. syringae B728a Psyr_2070 ErfK/YbiS/YcfS/YnhG strong 38 95
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2070 ErfK/YbiS/YcfS/YnhG insig. 38 95
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01816 hypothetical protein cofit 37 97
  Pseudomonas aeruginosa MRSN321 PFGADD_02119 L D-TPase catalytic domain-containing protein strong 41 83
  Pseudomonas aeruginosa PA14 IKLFDK_14500 YkuD domain-containing protein strong 41 83
  Pseudomonas aeruginosa PUPa3 NPBIFN_02159 L D-TPase catalytic domain-containing protein strong 41 83
  Pseudomonas orientalis W4I3 QF045_RS11135 L,D-transpeptidase family protein insig. 37 97
  Pseudomonas sp. BP01 JOY50_RS25815 L,D-transpeptidase family protein insig. 38 95
  Pseudomonas sp. S08-1 OH686_01780 L,D-transpeptidase strong 37 95
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2474 ErfK/YbiS/YcfS/YnhG family protein strong 38 96
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2221 ErfK/YbiS/YcfS/YnhG family protein strong 37 95
  Pseudomonas fluorescens FW300-N2E3 AO353_19015 hypothetical protein strong 38 95
  Pseudomonas fluorescens SBW25 PFLU_RS08365 L,D-transpeptidase family protein cofit 36 97
  Pseudomonas fluorescens SBW25-INTG PFLU_RS08365 L,D-transpeptidase family protein strong 36 97
  Pseudomonas sp. DMC3 GFF4626 putative L,D-transpeptidase YbiS cofit 38 95
  Pseudomonas simiae WCS417 PS417_08415 hypothetical protein strong 36 97
  Pseudomonas stutzeri RCH2 Psest_2334 Uncharacterized protein conserved in bacteria strong 37 95
  Pseudomonas sp. RS175 PFR28_00960 hypothetical protein strong 37 95
  Pseudomonas fluorescens FW300-N2C3 AO356_03215 hypothetical protein strong 37 95
  Pseudomonas protegens RBAN4 FABNJH_22090 ykuD YkuD domain-containing protein insig. 37 95
  Pseudomonas putida KT2440 PP_2320 conserved exported protein of unknown function strong 37 95
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_292 ErfK/YbiS/YcfS/YnhG family protein strong 37 95
  Pseudomonas sp. SVBP6 COO64_RS09790 L,D-transpeptidase family protein cofit 38 90
  Pseudomonas segetis P6 ACVTMO_RS13160 L,D-transpeptidase family protein strong 36 97
  Marinobacter adhaerens HP15 HP15_3824 ErfK/YbiS/YcfS/YnhG family protein strong 38 84
  Bosea sp. OAE506 ABIE41_RS21100 L,D-transpeptidase insig. 41 50
  Rhizobium sp. OAE497 ABIE40_RS03580 L,D-transpeptidase insig. 42 44
  Agrobacterium fabrum C58 Atu0669 hypothetical protein insig. 40 48
  Sinorhizobium meliloti 1021 SMc00924 hypothetical protein insig. 38 48
  Rhizobium sp. OAE497 ABIE40_RS03585 L,D-transpeptidase insig. 39 48
  Bosea sp. OAE506 ABIE41_RS22060 L,D-transpeptidase insig. 42 43
  Phaeobacter inhibens DSM 17395 PGA1_c34770 Uncharacterized protein conserved in bacteria sig. 38 45
  Azospirillum sp. SherDot2 MPMX19_04296 hypothetical protein insig. 39 44
  Dinoroseobacter shibae DFL-12 Dshi_3496 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) insig. 35 45
  Rhodopseudomonas palustris CGA009 TX73_001100 L,D-transpeptidase cofit 40 49
  Xanthobacter sp. DMC5 GFF3051 hypothetical protein insig. 40 43
  Xanthobacter sp. DMC5 GFF3088 hypothetical protein insig. 42 44
  Rhodopseudomonas palustris CGA009 TX73_018480 L,D-transpeptidase insig. 42 43
  Sinorhizobium meliloti 1021 SMc00925 signal peptide protein insig. 37 44
  Bosea sp. OAE506 ABIE41_RS14200 L,D-transpeptidase insig. 39 44
  Rhodopseudomonas palustris CGA009 TX73_021875 L,D-transpeptidase insig. 37 46
  Dinoroseobacter shibae DFL-12 Dshi_3781 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 36 45
  Dinoroseobacter shibae DFL-12 Dshi_4057 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 36 45
  Rhodopseudomonas palustris CGA009 TX73_005880 L,D-transpeptidase insig. 39 43
  Sinorhizobium meliloti 1021 SMc01200 hypothetical protein sig. 40 43
  Agrobacterium fabrum C58 Atu2336 hypothetical protein insig. 36 43
  Rhizobium sp. OAE497 ABIE40_RS05790 L,D-transpeptidase insig. 37 43
  Rhodopseudomonas palustris CGA009 TX73_024925 L,D-transpeptidase insig. 38 44
  Rhodopseudomonas palustris CGA009 TX73_018715 L,D-transpeptidase family protein no data 40 43
  Xanthobacter sp. DMC5 GFF1823 hypothetical protein insig. 38 43
  Phaeobacter inhibens DSM 17395 PGA1_c17320 Uncharacterized protein conserved in bacteria strong 35 43
  Xanthobacter sp. DMC5 GFF4262 hypothetical protein strong 45 30
  Dinoroseobacter shibae DFL-12 Dshi_3406 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) insig. 35 43
  Rhodopseudomonas palustris CGA009 TX73_008305 L,D-transpeptidase insig. 40 40
  Rhodopseudomonas palustris CGA009 TX73_023050 L,D-transpeptidase sig. 34 44
  Rhizobium sp. OAE497 ABIE40_RS26600 L,D-transpeptidase insig. 40 35
  Sinorhizobium meliloti 1021 SMc04338 hypothetical protein insig. 36 44
  Bosea sp. OAE506 ABIE41_RS10175 L,D-transpeptidase insig. 38 43
  Bosea sp. OAE506 ABIE41_RS22050 L,D-transpeptidase sig. 34 46
  Phaeobacter inhibens DSM 17395 PGA1_c26350 Uncharacterized protein conserved in bacteria insig. 33 51
  Sinorhizobium meliloti 1021 SMc02636 hypothetical protein strong 36 49
  Xanthobacter sp. DMC5 GFF2633 putative L,D-transpeptidase YbiS insig. 40 35
  Rhizobium sp. OAE497 ABIE40_RS13175 L,D-transpeptidase insig. 36 44
  Bosea sp. OAE506 ABIE41_RS08190 L,D-transpeptidase insig. 35 43
  Xanthobacter sp. DMC5 GFF4149 hypothetical protein no data 35 43
  Dinoroseobacter shibae DFL-12 Dshi_3595 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 37 44
  Dinoroseobacter shibae DFL-12 Dshi_3933 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 37 44
  Sinorhizobium meliloti 1021 SMc02582 hypothetical protein strong 30 75
  Rhizobium sp. OAE497 ABIE40_RS12005 L,D-transpeptidase cofit 30 60
  Agrobacterium fabrum C58 Atu0845 hypothetical protein sig. 32 47
  Rhizobium sp. OAE497 ABIE40_RS19495 L,D-transpeptidase strong 35 40
  Synechococcus elongatus PCC 7942 Synpcc7942_0647 hypothetical protein sig. 34 43
  Dinoroseobacter shibae DFL-12 Dshi_3598 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 30 46
  Dinoroseobacter shibae DFL-12 Dshi_3936 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 30 46
  Rhizobium sp. OAE497 ABIE40_RS04660 L,D-transpeptidase insig. 34 47
  Agrobacterium fabrum C58 Atu2133 hypothetical protein strong 29 65
  Sinorhizobium meliloti 1021 SMc00039 hypothetical protein insig. 34 40
  Agrobacterium fabrum C58 Atu0048 hypothetical protein strong 32 43
  Agrobacterium fabrum C58 Atu3331 hypothetical protein insig. 32 47
  Rhizobium sp. OAE497 ABIE40_RS04655 L,D-transpeptidase insig. 30 47
  Agrobacterium fabrum C58 Atu0844 hypothetical protein insig. 30 43
  Agrobacterium fabrum C58 Atu5196 hypothetical protein insig. 27 65
  Sinorhizobium meliloti 1021 SM_b21516 hypothetical protein strong 29 45
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS03880 L,D-transpeptidase family protein insig. 29 59
  Sinorhizobium meliloti 1021 SMc01575 hypothetical protein strong 28 60
  Dinoroseobacter shibae DFL-12 Dshi_3607 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 27 46
  Dinoroseobacter shibae DFL-12 Dshi_3945 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 27 46
  Synechocystis sp000284455 PCC 6803 SGL_RS13015 L,D-transpeptidase sig. 28 44
  Bosea sp. OAE506 ABIE41_RS06555 L,D-transpeptidase insig. 26 60
  Bosea sp. OAE506 ABIE41_RS13445 L,D-transpeptidase insig. 35 30
  Acidovorax sp. GW101-3H11 Ac3H11_4354 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) insig. 45 18
  Xanthobacter sp. DMC5 GFF2879 hypothetical protein insig. 32 30
  Rhizobium sp. OAE497 ABIE40_RS27810 L,D-transpeptidase insig. 30 41
  Sphingobium sp. HT1-2 GFF2124 L,D-transpeptidase cofit 29 43
  Sinorhizobium meliloti 1021 SM_b21573 hypothetical protein insig. 30 45
  Dechlorosoma suillum PS Dsui_2660 hypothetical protein no data 41 22
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1169.1 ErfK/YbiS/YcfS/YnhG family protein insig. 28 50
  Acinetobacter baumannii LAC-4 RR41_RS05540 L,D-transpeptidase insig. 26 50
  Lysobacter sp. OAE881 ABIE51_RS10880 L,D-transpeptidase insig. 28 51
  Acinetobacter radioresistens SK82 MPMX26_00975 hypothetical protein strong 28 44
  Methylophilus sp. DMC18 GFF919 hypothetical protein insig. 49 15
  Pseudomonas sp. SVBP6 COO64_RS09440 L,D-transpeptidase insig. 49 15
  Marinobacter adhaerens HP15 HP15_2261 ErfK/YbiS/YcfS/YnhG family protein no data 49 15
  Pseudomonas sp. BP01 JOY50_RS25080 L,D-transpeptidase insig. 47 15
  Acinetobacter radioresistens SK82 MPMX26_02503 hypothetical protein strong 39 16