Conservation of cofitness between Xcc-8004.3669.1 and Xcc-8004.3671.1 in Xanthomonas campestris pv. campestris strain 8004

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 1.0 Xcc-8004.3671.1 DNA recombination and repair protein RecO 0.27 20
Lysobacter sp. OAE881 0.70 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 ABIE51_RS13850 DNA repair protein RecO low > 62
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.42 OKGIIK_07860 recO DNA repair protein RecO low > 53
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 ABZR86_RS07140 DNA repair protein RecO low > 74
Rhodanobacter denitrificans MT42 0.60 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.43 LRK55_RS16695 DNA repair protein RecO low > 63
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.43 LRK54_RS16980 DNA repair protein RecO low > 59
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.42 LRK53_RS11965 DNA repair protein RecO low > 59
Marinobacter adhaerens HP15 0.45 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.22 HP15_786 DNA repair protein RecO low > 73
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.24 B158DRAFT_2189 DNA replication and repair protein RecO low > 40
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 ABZR87_RS10215 DNA repair protein RecO low > 80
Acinetobacter radioresistens SK82 0.41 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.21 MPMX26_02153 DNA repair protein RecO low > 36
Methylophilus sp. DMC18 0.41 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.20 GFF2740 DNA repair protein RecO low > 43
Ralstonia solanacearum PSI07 0.40 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.27 RPSI07_RS18965 DNA repair protein RecO low > 81
Ralstonia solanacearum UW163 0.40 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.26 UW163_RS11960 DNA repair protein RecO — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.26 RALBFv3_RS14495 DNA repair protein RecO low > 76
Ralstonia solanacearum GMI1000 0.40 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.27 RS_RS05275 DNA repair protein RecO low > 80
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.11 Ac3H11_1564 DNA recombination and repair protein RecO low > 79
Acinetobacter baumannii LAC-4 0.39 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.15 RR41_RS04865 DNA repair protein RecO low > 55
Dechlorosoma suillum PS 0.38 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.23 Dsui_2462 DNA repair protein RecO low > 51
Variovorax sp. SCN45 0.37 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.14 GFF3872 DNA recombination and repair protein RecO low > 127
Pseudomonas stutzeri RCH2 0.36 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.23 Psest_3090 DNA repair protein RecO low > 67
Pseudomonas sp. DMC3 0.36 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 GFF1959 DNA repair protein RecO low > 89
Pectobacterium carotovorum WPP14 0.35 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 HER17_RS05825 DNA repair protein RecO low > 75
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 PFLU_RS05270 DNA repair protein RecO low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 PFLU_RS05270 DNA repair protein RecO low > 109
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 GEMAOFIL_01246 DNA repair protein RecO low > 93
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.23 EX28DRAFT_0081 DNA replication and repair protein RecO low > 76
Pseudomonas aeruginosa PA14 0.35 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 IKLFDK_03315 DNA repair protein RecO low > 100
Enterobacter sp. TBS_079 0.35 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.18 MPMX20_03436 DNA repair protein RecO low > 85
Pseudomonas simiae WCS417 0.35 PS417_20155 23S rRNA methyltransferase 0.24 PS417_05200 DNA recombination protein RecO low > 88
Escherichia coli BL21 0.35 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.25 ECD_02459 gap repair protein low > 61
Escherichia coli ECOR38 0.35 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 HEPCGN_20565 recO DNA repair protein RecO low > 88
Escherichia coli ECOR27 0.35 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 NOLOHH_13095 recO DNA repair protein RecO low > 76
Klebsiella pneumoniae MKP103 0.34 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 KDGMDA_28435 DNA repair protein RecO low > 95
Escherichia coli HS(pFamp)R (ATCC 700891) 0.34 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 OHPLBJKB_01142 DNA repair protein RecO low > 74
Escherichia coli BW25113 0.34 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.25 b2565 recO DNA repair protein RecO (NCBI) low > 76
Escherichia coli Nissle 1917 0.34 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 ECOLIN_RS14520 DNA repair protein RecO — —
Serratia liquefaciens MT49 0.34 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 IAI46_19540 DNA repair protein RecO low > 86
Escherichia coli ECRC62 0.34 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 BNILDI_11895 recO DNA repair protein RecO low > 75
Escherichia coli ECRC99 0.34 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 KEDOAH_06800 recO DNA repair protein RecO — —
Escherichia coli ECRC101 0.34 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 MCAODC_11950 recO DNA repair protein RecO low > 88
Escherichia coli ECRC102 0.34 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 NIAGMN_19190 recO DNA repair protein RecO low > 80
Escherichia coli ECRC98 0.34 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 JDDGAC_25085 recO DNA repair protein RecO low > 87
Escherichia fergusonii Becca 0.34 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 EFB2_01331 DNA repair protein RecO low > 86
Escherichia coli ECRC100 0.34 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 OKFHMN_21420 recO DNA repair protein RecO low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.24 GFF2473 DNA recombination and repair protein RecO 0.63 2
Erwinia amylovora T8 0.34 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 OLJFJH_10265 DNA repair protein RecO low > 58
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_19055 23S rRNA methyltransferase 0.25 AO356_17505 DNA repair protein RecO low > 104
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.24 Pf1N1B4_890 DNA recombination and repair protein RecO low > 87
Pseudomonas sp. S08-1 0.34 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.21 OH686_20090 DNA repair protein RecO low > 80
Dickeya dianthicola ME23 0.33 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 DZA65_RS16890 DNA repair protein RecO low > 75
Shewanella loihica PV-4 0.33 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.21 Shew_1056 DNA repair protein RecO (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.24 Pf6N2E2_5428 DNA recombination and repair protein RecO low > 103
Shewanella oneidensis MR-1 0.33 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.21 SO1350 recO DNA repair protein RecO (NCBI ptt file) low > 76
Erwinia tracheiphila HP pepo 2.2 0.33 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 IJEDHG_01180 recO DNA repair protein RecO low > 61
Dickeya dadantii 3937 0.33 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 DDA3937_RS15725 DNA repair protein RecO low > 74
Pseudomonas segetis P6 0.33 MPMX49_01653 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 MPMX49_01410 DNA repair protein RecO low > 75
Erwinia tracheiphila SCR3 0.33 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 LU632_RS15375 recO DNA repair protein RecO low > 74
Shewanella sp. ANA-3 0.33 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.22 Shewana3_3024 DNA repair protein RecO (RefSeq) low > 73
Klebsiella michiganensis M5al 0.33 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.24 BWI76_RS21310 DNA repair protein RecO low > 92
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 CSW01_12445 DNA repair protein RecO low > 62
Pseudomonas sp. RS175 0.33 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 PFR28_03521 DNA repair protein RecO low > 88
Dickeya dianthicola 67-19 0.33 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 HGI48_RS15810 DNA repair protein RecO 0.35 46
Shewanella amazonensis SB2B 0.32 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.20 Sama_0882 DNA repair protein RecO (RefSeq) low > 62
Rahnella sp. WP5 0.32 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 EX31_RS21845 DNA repair protein RecO low > 89
Pseudomonas sp. SVBP6 0.32 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 COO64_RS16565 recO DNA repair protein RecO low > 93
Pantoea sp. MT58 0.32 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 IAI47_04890 DNA repair protein RecO low > 76
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_02715 23S rRNA methyltransferase 0.24 AO353_04500 DNA repair protein RecO low > 101
Pseudomonas sp. BP01 0.32 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.21 JOY50_RS14705 recO DNA repair protein RecO low > 84
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.23 Psyr_3949 DNA replication and repair protein RecO low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.23 Psyr_3949 DNA replication and repair protein RecO low > 86
Pantoea agglomerans CFBP13505 P0401 0.32 PagCFBP13505_RS16855 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 PagCFBP13505_RS14780 DNA repair protein RecO low > 74
Pseudomonas putida KT2440 0.32 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.21 PP_1435 DNA repair protein RecO low > 96
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.24 PfGW456L13_4838 DNA recombination and repair protein RecO low > 87

Not shown: 34 genomes with orthologs for Xcc-8004.3669.1 only; 1 genomes with orthologs for Xcc-8004.3671.1 only