| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.2282.1 | | tRNA:Cm32/Um32 methyltransferase | 1.0 | Xcc-8004.2274.1 | | ATP-dependent 23S rRNA helicase DbpA | 0.37 | 6 |
| Lysobacter sp. OAE881 | 0.65 | ABIE51_RS14985 | | RNA methyltransferase | 0.67 | ABIE51_RS14930 | | ATP-dependent RNA helicase DbpA | low | > 62 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS12670 | | RNA methyltransferase | 0.58 | LRK55_RS09695 | | ATP-dependent RNA helicase DbpA | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_02340 | trmJ | RNA methyltransferase | 0.59 | OKGIIK_16320 | dbpA | ATP-dependent RNA helicase DbpA | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS12970 | | RNA methyltransferase | 0.58 | LRK54_RS10055 | | ATP-dependent RNA helicase DbpA | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS19895 | | RNA methyltransferase | 0.59 | ABZR86_RS05195 | | ATP-dependent RNA helicase DbpA | low | > 74 |
| Pseudomonas fluorescens FW300-N2C3 | 0.43 | AO356_06660 | | RNA methyltransferase | 0.51 | AO356_13770 | | ATP-dependent RNA helicase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_3192 | | tRNA:Cm32/Um32 methyltransferase | 0.52 | Pf6N2E2_4673 | | ATP-dependent 23S rRNA helicase DbpA | low | > 103 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_00283 | | 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 | 0.51 | PFR28_04172 | | ATP-dependent RNA helicase DbpA | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_15820 | | RNA methyltransferase | 0.53 | AO353_07850 | | ATP-dependent RNA helicase | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS24870 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.51 | PFLU_RS28020 | | ATP-dependent RNA helicase DbpA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS24870 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.51 | PFLU_RS28020 | | ATP-dependent RNA helicase DbpA | low | > 109 |
| Pseudomonas sp. S08-1 | 0.42 | OH686_17460 | | tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase | 0.50 | OH686_14770 | | ATP-dependent 23S rRNA helicase DbpA | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_4876 | | tRNA:Cm32/Um32 methyltransferase | 0.53 | PfGW456L13_1078 | | ATP-dependent 23S rRNA helicase DbpA | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_1234 | | RNA methyltransferase TrmH, group 1 | 0.52 | Psyr_0516 | | ATP-dependent RNA helicase DbpA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_1234 | | RNA methyltransferase TrmH, group 1 | 0.52 | Psyr_0516 | | ATP-dependent RNA helicase DbpA | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_1248 | | RNA methyltransferase, TrmH family, group 1 | 0.52 | Psest_0344 | | Superfamily II DNA and RNA helicases | low | > 67 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_868 | | tRNA:Cm32/Um32 methyltransferase | 0.51 | Pf1N1B4_2412 | | ATP-dependent 23S rRNA helicase DbpA | low | > 87 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_23215 | | RNA methyltransferase | 0.51 | PS417_26370 | | RNA helicase | 0.17 | 41 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_1484 | | RNA methyltransferase, TrmH family, group 1 | 0.49 | HP15_1329 | | DEAD/DEAH box helicase domain protein | low | > 73 |
| Pseudomonas putida KT2440 | 0.40 | PP_0839 | | tRNA Cm32/Um32 methyltransferase | 0.51 | PP_4952 | | ATP-dependent RNA helicase, specific for 23S rRNA | low | > 96 |
| Enterobacter sp. TBS_079 | 0.39 | MPMX20_03413 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | 0.48 | MPMX20_02441 | | ATP-dependent RNA helicase DbpA | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF2437 | | tRNA:Cm32/Um32 methyltransferase | 0.48 | GFF2649 | | ATP-dependent 23S rRNA helicase DbpA | low | > 78 |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_0107 | | RNA methyltransferase, TrmH family, group 1 | 0.49 | EX28DRAFT_1006 | | Superfamily II DNA and RNA helicases | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.39 | CSW01_03875 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | CSW01_12980 | | ATP-dependent RNA helicase DbpA | 0.43 | 24 |
| Rahnella sp. WP5 | 0.38 | EX31_RS20555 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.49 | EX31_RS24740 | | ATP-dependent RNA helicase DbpA | low | > 89 |
| Klebsiella michiganensis M5al | 0.38 | BWI76_RS21170 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | BWI76_RS12705 | | ATP-dependent RNA helicase | low | > 92 |
| Shewanella loihica PV-4 | 0.38 | Shew_2320 | | RNA methyltransferase (RefSeq) | 0.48 | Shew_0598 | | ATP-dependent RNA helicase DbpA (RefSeq) | low | > 60 |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_19380 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | NIAGMN_26330 | dbpA | ATP-dependent RNA helicase DbpA | — | — |
| Escherichia coli ECRC101 | 0.38 | MCAODC_12140 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | MCAODC_16095 | dbpA | ATP-dependent RNA helicase DbpA | low | > 87 |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_21610 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | OKFHMN_02160 | dbpA | ATP-dependent RNA helicase DbpA | low | > 80 |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_1456 | | RNA methyltransferase, TrmH family, group 1 | 0.44 | B158DRAFT_2047 | | ATP-dependent RNA helicase DbpA (EC 5.99.1.-) | low | > 40 |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_06610 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | KEDOAH_26595 | dbpA | ATP-dependent RNA helicase DbpA | — | — |
| Escherichia coli ECRC62 | 0.38 | BNILDI_12080 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | BNILDI_18025 | dbpA | ATP-dependent RNA helicase DbpA | low | > 75 |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_25285 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | JDDGAC_04720 | dbpA | ATP-dependent RNA helicase DbpA | low | > 86 |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_20750 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | HEPCGN_26000 | dbpA | ATP-dependent RNA helicase DbpA | low | > 87 |
| Alteromonas macleodii MIT1002 | 0.38 | MIT1002_02806 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | 0.43 | MIT1002_03748 | | ATP-independent RNA helicase DbpA | — | — |
| Escherichia coli ECOR27 | 0.37 | NOLOHH_13280 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | NOLOHH_19875 | dbpA | ATP-dependent RNA helicase DbpA | low | > 75 |
| Escherichia fergusonii Becca | 0.37 | EFB2_01358 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | 0.48 | EFB2_02584 | | ATP-dependent RNA helicase DbpA | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.37 | OHPLBJKB_01177 | | 'tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ' transl_table=11 | 0.48 | OHPLBJKB_02338 | | ATP-dependent RNA helicase DbpA | low | > 73 |
| Escherichia coli BW25113 | 0.37 | b2532 | yfhQ | predicted methyltransferase (NCBI) | 0.48 | b1343 | dbpA | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.37 | ECOLIN_RS14375 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | ECOLIN_RS08060 | | ATP-dependent RNA helicase DbpA | — | — |
| Escherichia coli BL21 | 0.37 | ECD_02424 | | tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent | 0.48 | ECD_01320 | | ATP-dependent RNA helicase, specific for 23S rRNA | low | > 61 |
| Serratia liquefaciens MT49 | 0.37 | IAI46_19365 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.50 | IAI46_14765 | | ATP-dependent RNA helicase DbpA | low | > 86 |
| Shewanella oneidensis MR-1 | 0.37 | SO2261 | | RNA methyltransferase, TrmH family, group 1 (NCBI ptt file) | 0.47 | SO0897 | dbpA | ATP-dependent RNA helicase DbpA (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_2283 | | RNA methyltransferase (RefSeq) | 0.48 | Shewana3_3384 | | ATP-dependent RNA helicase DbpA (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.36 | DZA65_RS16730 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.49 | DZA65_RS11470 | | ATP-dependent RNA helicase DbpA | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.36 | HER17_RS06005 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.48 | HER17_RS06775 | | ATP-dependent RNA helicase DbpA | low | > 75 |
| Dickeya dadantii 3937 | 0.36 | DDA3937_RS15555 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.49 | DDA3937_RS11045 | | ATP-dependent RNA helicase DbpA | low | > 74 |
| Dickeya dianthicola 67-19 | 0.35 | HGI48_RS15655 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.49 | HGI48_RS11065 | | ATP-dependent RNA helicase DbpA | low | > 71 |
| Shewanella amazonensis SB2B | 0.35 | Sama_1290 | | RNA methyltransferase (RefSeq) | 0.48 | Sama_0752 | | ATP-dependent RNA helicase DbpA (RefSeq) | low | > 62 |
| Pantoea sp. MT58 | 0.35 | IAI47_04995 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.47 | IAI47_15055 | | ATP-dependent RNA helicase DbpA | low | > 76 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.35 | H281DRAFT_00540 | | tRNA/rRNA methyltransferase | 0.45 | H281DRAFT_02294 | | ATP-dependent RNA helicase DbpA | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_002713 | | tRNA/rRNA methyltransferase | 0.45 | ABIE53_000368 | | ATP-independent RNA helicase DbpA | low | > 113 |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS05785 | | RNA methyltransferase | 0.47 | RS_RS03120 | | ATP-dependent RNA helicase DbpA | low | > 80 |
| Erwinia tracheiphila SCR3 | 0.34 | LU632_RS17880 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.46 | LU632_RS11995 | dbpA | ATP-dependent RNA helicase DbpA | low | > 74 |
| Ralstonia solanacearum PSI07 | 0.33 | RPSI07_RS18405 | | RNA methyltransferase | 0.47 | RPSI07_RS20905 | | ATP-dependent RNA helicase DbpA | low | > 81 |
| Dechlorosoma suillum PS | 0.33 | Dsui_2367 | | RNA methyltransferase, TrmH family, group 1 | 0.44 | Dsui_2946 | | DNA/RNA helicase, superfamily II | 0.33 | 25 |
| Burkholderia phytofirmans PsJN | 0.33 | BPHYT_RS12460 | | RNA methyltransferase | 0.45 | BPHYT_RS00150 | | DEAD/DEAH box helicase | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.32 | QEN71_RS06100 | | RNA methyltransferase | 0.45 | QEN71_RS00065 | | ATP-dependent RNA helicase DbpA | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.32 | ABZR87_RS10615 | | RNA methyltransferase | 0.44 | ABZR87_RS19855 | | ATP-dependent RNA helicase DbpA | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.29 | Ac3H11_3646 | | tRNA:Cm32/Um32 methyltransferase | 0.45 | Ac3H11_4671 | | ATP-dependent 23S rRNA helicase DbpA | low | > 79 |
| Variovorax sp. OAS795 | 0.29 | ABID97_RS20730 | | RNA methyltransferase | 0.45 | ABID97_RS02340 | | ATP-dependent RNA helicase DbpA | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.29 | ABCV34_RS00355 | | RNA methyltransferase | 0.47 | ABCV34_RS04635 | | ATP-dependent RNA helicase DbpA | low | > 48 |
| Variovorax sp. SCN45 | 0.28 | GFF4680 | | tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase (EC 2.1.1.200) | 0.43 | GFF7138 | | ATP-dependent 23S rRNA helicase DbpA | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.27 | GFF3650 | | tRNA:Cm32/Um32 methyltransferase | 0.47 | GFF5449 | | ATP-dependent 23S rRNA helicase DbpA | — | — |
Not shown: 21 genomes with orthologs for Xcc-8004.2282.1 only; 2 genomes with orthologs for Xcc-8004.2274.1 only