Conservation of cofitness between TX73_016655 and TX73_023700 in Rhodopseudomonas palustris CGA009

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_016655 replication-associated recombination protein A 1.0 TX73_023700 2-dehydropantoate 2-reductase 0.42 12
Bosea sp. OAE506 0.73 ABIE41_RS14690 replication-associated recombination protein A 0.55 ABIE41_RS11280 2-dehydropantoate 2-reductase low > 77
Azospirillum brasilense Sp245 0.64 AZOBR_RS06885 ATPase AAA 0.24 AZOBR_RS12955 2-dehydropantoate 2-reductase — —
Caulobacter crescentus NA1000 Δfur 0.59 CCNA_01342 ATPase, AAA family 0.19 CCNA_00262 ketopantoate reductase panE/ApbA family protein low > 67
Caulobacter crescentus NA1000 0.59 CCNA_01342 ATPase, AAA family 0.19 CCNA_00262 ketopantoate reductase panE/ApbA family protein low > 66
Pseudomonas sp. RS175 0.47 PFR28_02606 Replication-associated recombination protein A 0.17 PFR28_00963 hypothetical protein low > 88
Pseudomonas sp. S08-1 0.47 OH686_00270 Replication-associated recombination protein RarA 0.17 OH686_01745 2-dehydropantoate 2-reductase low > 80
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_27640 recombination factor protein RarA 0.12 AO353_19045 2-dehydropantoate 2-reductase 0.22 26
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_3177 Recombination protein MgsA 0.16 Psyr_2074 ketopantoate reductase low > 86
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_3177 Recombination protein MgsA 0.16 Psyr_2074 ketopantoate reductase low > 86
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.15 Pf6N2E2_2468 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 103
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_22185 recombination factor protein RarA 0.14 AO356_03195 2-dehydropantoate 2-reductase low > 104
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.15 Pf1N1B4_286 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 87
Pseudomonas stutzeri RCH2 0.46 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.18 Psest_1140 2-dehydropantoate 2-reductase low > 67
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.14 PfGW456L13_2227 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 87
Pseudomonas simiae WCS417 0.46 PS417_16480 recombination factor protein RarA 0.15 PS417_08445 2-dehydropantoate 2-reductase low > 88
Pseudomonas putida KT2440 0.46 PP_4002 DNA-dependent ATPase required for recombination 0.24 PP_2998 2-dehydropantoate 2-reductase low > 96
Pseudomonas fluorescens SBW25 0.46 PFLU_RS18520 replication-associated recombination protein A 0.15 PFLU_RS08395 putative 2-dehydropantoate 2-reductase low > 109
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS18520 replication-associated recombination protein A 0.15 PFLU_RS08395 putative 2-dehydropantoate 2-reductase low > 109
Marinobacter adhaerens HP15 0.45 HP15_1817 recombination factor protein RarA 0.18 HP15_4040 ketopantoate reductase ApbA/PanE low > 73
Shewanella sp. ANA-3 0.44 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.12 Shewana3_0780 2-dehydropantoate 2-reductase (RefSeq) low > 73
Shewanella loihica PV-4 0.44 Shew_2022 recombination factor protein RarA (RefSeq) 0.12 Shew_2895 2-dehydropantoate 2-reductase (RefSeq) low > 60
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS01825 replication-associated recombination protein A 0.15 ABZR86_RS12305 2-dehydropantoate 2-reductase low > 74
Shewanella oneidensis MR-1 0.44 SO2308 ATPase, AAA family (NCBI ptt file) 0.12 SO3817 panE 2-dehydropantoate 2-reductase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.44 Sama_1774 recombination factor protein RarA (RefSeq) 0.11 Sama_2559 2-dehydropantoate 2-reductase (RefSeq) — —
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS04355 recombination factor protein RarA 0.20 RR42_RS32960 2-dehydropantoate 2-reductase low > 128
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS05100 ATPase AAA 0.26 BPHYT_RS27355 2-dehydropantoate 2-reductase low > 109
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS03415 replication-associated recombination protein A 0.54 QEN71_RS14995 2-dehydropantoate 2-reductase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_00180 Recombination protein MgsA 0.25 H281DRAFT_01683 ketopantoate reductase (EC 1.1.1.169) low > 103
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS16030 replication-associated recombination protein A 0.27 ABZR87_RS18435 2-dehydropantoate 2-reductase low > 80
Klebsiella michiganensis M5al 0.43 BWI76_RS09670 recombination factor protein RarA 0.12 BWI76_RS14790 2-dehydropantoate 2-reductase — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS09515 ATPase AAA 0.52 HSERO_RS09230 2-dehydropantoate 2-reductase low > 78
Dickeya dianthicola 67-19 0.43 HGI48_RS09620 replication-associated recombination protein A 0.15 HGI48_RS06950 oxidoreductase low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS09930 replication-associated recombination protein A 0.14 DZA65_RS07295 oxidoreductase low > 75
Dickeya dadantii 3937 0.43 DDA3937_RS09605 replication-associated recombination protein A 0.14 DDA3937_RS11860 oxidoreductase low > 74
Variovorax sp. SCN45 0.43 GFF6034 Replication-associated recombination protein RarA 0.52 GFF3590 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 127
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS04145 replication-associated recombination protein A 0.19 RALBFv3_RS17830 2-dehydropantoate 2-reductase — —
Ralstonia solanacearum UW163 0.43 UW163_RS09525 replication-associated recombination protein A 0.19 UW163_RS21310 2-dehydropantoate 2-reductase — —
Ralstonia solanacearum PSI07 0.43 RPSI07_RS13205 replication-associated recombination protein A 0.22 RPSI07_RS05730 2-dehydropantoate 2-reductase low > 81
Variovorax sp. OAS795 0.43 ABID97_RS07835 replication-associated recombination protein A 0.53 ABID97_RS00870 2-dehydropantoate 2-reductase low > 91
Enterobacter sp. TBS_079 0.43 MPMX20_01554 Replication-associated recombination protein A 0.16 MPMX20_01144 2-dehydropantoate 2-reductase low > 85
Serratia liquefaciens MT49 0.43 IAI46_08570 replication-associated recombination protein A 0.12 IAI46_04950 2-dehydropantoate 2-reductase low > 86
Enterobacter asburiae PDN3 0.42 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.14 EX28DRAFT_2416 2-dehydropantoate 2-reductase low > 76
Ralstonia solanacearum GMI1000 0.42 RS_RS11735 replication-associated recombination protein A 0.22 RS_RS23145 2-dehydropantoate 2-reductase low > 80
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.52 Ac3H11_2346 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 79
Pectobacterium carotovorum WPP14 0.42 HER17_RS12345 replication-associated recombination protein A 0.14 HER17_RS13760 oxidoreductase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF4896 FIG065221: Holliday junction DNA helicase 0.25 GFF2467 2-dehydropantoate 2-reductase (EC 1.1.1.169) low > 78
Escherichia coli ECOR38 0.42 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.15 HEPCGN_07025 panE 2-dehydropantoate 2-reductase low > 87
Escherichia coli ECOR27 0.42 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.15 NOLOHH_01345 panE 2-dehydropantoate 2-reductase low > 75
Escherichia coli ECRC62 0.42 BNILDI_20385 rarA replication-associated recombination protein RarA 0.15 BNILDI_22760 panE 2-dehydropantoate 2-reductase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_02776 Replication-associated recombination protein A 0.15 OHPLBJKB_03251 2-dehydropantoate 2-reductase low > 73
Escherichia coli ECRC98 0.42 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.15 JDDGAC_12050 panE 2-dehydropantoate 2-reductase 0.49 67
Escherichia coli ECRC99 0.42 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.15 KEDOAH_19570 panE 2-dehydropantoate 2-reductase — —
Escherichia fergusonii Becca 0.42 EFB2_03169 Replication-associated recombination protein A 0.15 EFB2_03632 2-dehydropantoate 2-reductase low > 86
Escherichia coli BL21 0.42 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.15 ECD_00373 2-dehydropantoate reductase, NADPH-specific low > 61
Escherichia coli Nissle 1917 0.42 ECOLIN_RS04745 replication-associated recombination protein RarA 0.15 ECOLIN_RS02560 2-dehydropantoate 2-reductase low > 55
Escherichia coli ECRC100 0.42 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.15 OKFHMN_08395 panE 2-dehydropantoate 2-reductase low > 80
Escherichia coli ECRC102 0.42 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.15 NIAGMN_06450 panE 2-dehydropantoate 2-reductase — —
Escherichia coli BW25113 0.42 b0892 ycaJ recombination protein (NCBI) 0.15 b0425 panE 2-dehydropantoate 2-reductase (NCBI) low > 76
Escherichia coli ECRC101 0.42 MCAODC_24950 rarA replication-associated recombination protein RarA 0.15 MCAODC_27620 panE 2-dehydropantoate 2-reductase low > 87
Erwinia tracheiphila SCR3 0.42 LU632_RS09755 replication-associated recombination protein A 0.13 LU632_RS18455 panE 2-dehydropantoate 2-reductase low > 74
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_05630 replication-associated recombination protein A 0.21 CSW01_11730 2-dehydropantoate 2-reductase low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_02215 AAA family ATPase 0.18 CA264_06150 hypothetical protein low > 74
Alteromonas macleodii MIT1002 0.40 MIT1002_02178 Replication-associated recombination protein A 0.24 MIT1002_01348 2-dehydropantoate 2-reductase low > 70
Bacteroides ovatus ATCC 8483 0.39 BACOVA_03971 ATPase, AAA family 0.15 BACOVA_02822 2-dehydropantoate 2-reductase low > 94
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS16975 replication-associated recombination protein A 0.15 HMPREF1181_RS01990 2-dehydropantoate 2-reductase low > 56
Phocaeicola dorei CL03T12C01 0.38 ABI39_RS20200 replication-associated recombination protein A 0.17 ABI39_RS05455 ketopantoate reductase family protein low > 72
Phocaeicola vulgatus CL09T03C04 0.38 HMPREF1058_RS06440 replication-associated recombination protein A 0.16 HMPREF1058_RS11485 ketopantoate reductase family protein low > 67
Bacteroides thetaiotaomicron VPI-5482 0.38 BT1205 putative ATPase, AAA family (NCBI ptt file) 0.16 BT3117 putative oxidoreductase (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS15395 replication-associated recombination protein A 0.20 HMPREF1078_RS09455 2-dehydropantoate 2-reductase low > 61

Not shown: 30 genomes with orthologs for TX73_016655 only; 2 genomes with orthologs for TX73_023700 only