Conservation of cofitness between TX73_019540 and TX73_002885 in Rhodopseudomonas palustris CGA009

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_019540 FAD-dependent oxidoreductase 1.0 TX73_002885 cysteine synthase A 0.50 16
Rhizobium sp. OAE497 0.54 ABIE40_RS03380 FAD-binding oxidoreductase 0.64 ABIE40_RS01415 cysteine synthase A low > 107
Sinorhizobium meliloti 1021 0.53 SMc00797 oxidoreductase 0.66 SMc00421 O-acetylserine sulfhydrylase A low > 103
Pseudomonas putida KT2440 0.52 PP_3596 D-lysine oxidase 0.43 PP_4571 cysteine synthase A low > 96
Bosea sp. OAE506 0.51 ABIE41_RS13575 FAD-binding oxidoreductase 0.65 ABIE41_RS03545 cysteine synthase A low > 77
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF267 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.42 GFF4578 Cysteine synthase (EC 2.5.1.47) low > 90
Shewanella loihica PV-4 0.24 Shew_2360 D-hydroxyproline dehydrogenase (from data) 0.43 Shew_2382 cysteine synthase A (RefSeq) low > 60
Shewanella amazonensis SB2B 0.23 Sama_1533 D-amino-acid dehydrogenase (RefSeq) 0.42 Sama_1508 cysteine synthase A (RefSeq) low > 62
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS16215 FAD-binding oxidoreductase 0.44 PFLU_RS07585 cysteine synthase A 0.13 82
Pseudomonas fluorescens SBW25 0.21 PFLU_RS16215 FAD-binding oxidoreductase 0.44 PFLU_RS07585 cysteine synthase A low > 109
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_3586 D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster 0.44 PfGW456L13_4472 Cysteine synthase (EC 2.5.1.47) low > 87
Agrobacterium fabrum C58 0.20 Atu3364 D-amino acid dehydrogenase 0.62 Atu0312 cysteine synthase low > 89
Pseudomonas simiae WCS417 0.19 PS417_14320 FAD-dependent oxidoreductase 0.44 PS417_07505 cysteine synthase low > 88
Rhodospirillum rubrum S1H 0.19 Rru_A2064 FAD dependent oxidoreductase (NCBI) 0.63 Rru_A3794 Cysteine synthase (NCBI) — —
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS22955 D-amino acid dehydrogenase 0.32 HSERO_RS04915 cysteine synthase — —
Azospirillum sp. SherDot2 0.18 MPMX19_04536 D-amino acid dehydrogenase 1 0.60 MPMX19_00237 Cysteine synthase low > 112
Cupriavidus basilensis FW507-4G11 0.18 RR42_RS09075 amino acid dehydrogenase 0.41 RR42_RS21960 cysteine synthase low > 128
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_04065 D-amino acid dehydrogenase small subunit 0.47 CSW01_04945 cysteine synthase A low > 62
Xanthomonas campestris pv. campestris strain 8004 0.17 Xcc-8004.1916.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.34 Xcc-8004.1247.1 Cysteine synthase (EC 2.5.1.47) low > 74
Variovorax sp. OAS795 0.16 ABID97_RS22385 D-amino acid dehydrogenase 0.41 ABID97_RS06080 cysteine synthase A low > 91
Rhodanobacter sp. FW510-T8 0.16 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit 0.35 OKGIIK_05985 cysK cysteine synthase A low > 52
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.45 Pf6N2E2_2700 Cysteine synthase (EC 2.5.1.47) low > 103
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS00590 D-amino acid dehydrogenase 0.36 LRK54_RS00905 cysteine synthase A low > 59
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_12620 amino acid dehydrogenase 0.45 AO356_04305 cysteine synthase low > 104
Pseudomonas sp. S08-1 0.16 OH686_13685 D-amino acid dehydrogenase 0.45 OH686_05215 cysteine synthase A low > 80
Brevundimonas sp. GW460-12-10-14-LB2 0.16 A4249_RS08770 D-amino acid dehydrogenase 0.66 A4249_RS10255 cysteine synthase A low > 48
Pseudomonas sp. RS175 0.16 PFR28_04399 D-amino acid dehydrogenase 1 0.46 PFR28_00734 Cysteine synthase A low > 88
Rhodanobacter denitrificans MT42 0.16 LRK55_RS00360 D-amino acid dehydrogenase 0.36 LRK55_RS00680 cysteine synthase A low > 63
Pseudomonas fluorescens FW300-N2E3 0.16 AO353_09155 amino acid dehydrogenase 0.45 AO353_18020 cysteine synthase low > 101
Variovorax sp. SCN45 0.16 GFF1773 D-amino acid dehydrogenase (EC 1.4.99.6) 0.42 GFF4549 Cysteine synthase (EC 2.5.1.47) low > 127
Pseudomonas fluorescens FW300-N1B4 0.16 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.44 Pf1N1B4_3374 Cysteine synthase (EC 2.5.1.47) low > 87
Pseudomonas stutzeri RCH2 0.16 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.43 Psest_1855 cysteine synthase A low > 67
Pectobacterium carotovorum WPP14 0.15 HER17_RS11170 D-amino acid dehydrogenase 0.45 HER17_RS17170 cysteine synthase A low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_0235 D-amino acid dehydrogenase small subunit 0.45 Psyr_1583 cysteine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_0235 D-amino acid dehydrogenase small subunit 0.45 Psyr_1583 cysteine synthase low > 86
Dinoroseobacter shibae DFL-12 0.14 Dshi_0558 D-amino-acid dehydrogenase (RefSeq) 0.31 Dshi_0891 cysteine synthase A (RefSeq) low > 64
Dechlorosoma suillum PS 0.14 Dsui_0501 glycine/D-amino acid oxidase, deaminating 0.50 Dsui_3208 cysteine synthase A — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.46 GFF2044 Cysteine synthase (EC 2.5.1.47) low > 78
Rahnella sp. WP5 0.14 EX31_RS10485 D-amino acid dehydrogenase 0.49 EX31_RS20175 cysteine synthase A low > 89
Azospirillum brasilense Sp245 0.14 AZOBR_RS08020 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.61 AZOBR_RS01080 cysteine synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.14 CA265_RS05715 amino acid dehydrogenase 0.32 CA265_RS13740 cysteine synthase low > 88
Dickeya dianthicola 67-19 0.14 HGI48_RS11195 D-amino acid dehydrogenase 0.45 HGI48_RS04450 cysteine synthase A low > 71
Dickeya dadantii 3937 0.14 DDA3937_RS11170 D-amino acid dehydrogenase 0.45 DDA3937_RS04490 cysteine synthase A low > 74
Klebsiella michiganensis M5al 0.14 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.46 BWI76_RS20640 cysteine synthase A low > 92
Dickeya dianthicola ME23 0.14 DZA65_RS11540 D-amino acid dehydrogenase 0.45 DZA65_RS04370 cysteine synthase A low > 75
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.46 EX28DRAFT_0214 cysteine synthase A low > 76
Escherichia coli ECRC100 0.13 OKFHMN_28290 dadA D-amino acid dehydrogenase 0.46 OKFHMN_22200 cysK cysteine synthase A — —
Escherichia coli ECRC101 0.13 MCAODC_21880 dadA D-amino acid dehydrogenase 0.46 MCAODC_12730 cysK cysteine synthase A low > 87
Acidovorax sp. GW101-3H11 0.13 Ac3H11_1644 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.41 Ac3H11_1975 Cysteine synthase (EC 2.5.1.47) low > 79
Escherichia coli ECOR38 0.13 HEPCGN_24750 dadA D-amino acid dehydrogenase 0.46 HEPCGN_21380 cysK cysteine synthase A low > 87
Escherichia fergusonii Becca 0.13 EFB2_02743 D-amino acid dehydrogenase 0.46 EFB2_01462 Cysteine synthase A low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_02500 D-amino acid dehydrogenase 0.46 OHPLBJKB_01309 Cysteine synthase A low > 73
Escherichia coli BL21 0.13 ECD_01164 D-amino acid dehydrogenase 0.46 ECD_02314 cysteine synthase A, O-acetylserine sulfhydrolase A subunit low > 61
Escherichia coli ECRC99 0.13 KEDOAH_25305 dadA D-amino acid dehydrogenase 0.46 KEDOAH_06020 cysK cysteine synthase A — —
Escherichia coli ECOR27 0.13 NOLOHH_20725 dadA D-amino acid dehydrogenase 0.46 NOLOHH_13880 cysK cysteine synthase A low > 75
Escherichia coli ECRC102 0.13 NIAGMN_27930 dadA D-amino acid dehydrogenase 0.46 NIAGMN_19970 cysK cysteine synthase A — —
Escherichia coli ECRC98 0.13 JDDGAC_06220 dadA D-amino acid dehydrogenase 0.46 JDDGAC_26150 cysK cysteine synthase A — —
Escherichia coli Nissle 1917 0.13 ECOLIN_RS07185 D-amino acid dehydrogenase 0.46 ECOLIN_RS13870 cysteine synthase A — —
Escherichia coli ECRC62 0.13 BNILDI_18890 dadA D-amino acid dehydrogenase 0.46 BNILDI_12745 cysK cysteine synthase A low > 75
Escherichia coli BW25113 0.13 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 0.46 b2414 cysK cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) low > 76
Pantoea sp. MT58 0.13 IAI47_08890 D-amino acid dehydrogenase 0.47 IAI47_05440 cysteine synthase A low > 76
Magnetospirillum magneticum AMB-1 0.13 AMB_RS14080 D-amino-acid dehydrogenase 0.62 AMB_RS01005 cysteine synthase A — —
Enterobacter sp. TBS_079 0.13 MPMX20_02699 D-amino acid dehydrogenase 0.46 MPMX20_03308 Cysteine synthase A low > 85
Erwinia tracheiphila SCR3 0.13 LU632_RS13070 D-amino acid dehydrogenase 0.47 LU632_RS06625 cysK cysteine synthase A low > 74
Acinetobacter radioresistens SK82 0.12 MPMX26_01248 D-amino acid dehydrogenase 0.34 MPMX26_00536 Cysteine synthase B — —
Marinobacter adhaerens HP15 0.12 HP15_2610 D-amino acid dehydrogenase small subunit 0.47 HP15_3453 cysteine synthase A low > 73
Serratia liquefaciens MT49 0.12 IAI46_14460 D-amino acid dehydrogenase 0.46 IAI46_18445 cysteine synthase A low > 86
Dyella japonica UNC79MFTsu3.2 0.11 ABZR86_RS08930 FAD-dependent oxidoreductase 0.37 ABZR86_RS05875 cysteine synthase A — —
Sphingomonas koreensis DSMZ 15582 0.11 Ga0059261_3351 Glycine/D-amino acid oxidases (deaminating) 0.41 Ga0059261_3644 cysteine synthase A low > 68

Not shown: 12 genomes with orthologs for TX73_019540 only; 19 genomes with orthologs for TX73_002885 only