| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc02868 | | multidrug efflux system protein | 1.0 | SMc01457 | | transport transmembrane protein | 0.73 | 2 |
| Agrobacterium fabrum C58 | 0.55 | Atu3203 | | RND multidrug efflux membrane permease | 0.68 | Atu2054 | | AcrB/AcrD/AcrF family protein | low | > 89 |
| Rhodopseudomonas palustris CGA009 | 0.52 | TX73_020240 | | efflux RND transporter periplasmic adaptor subunit | 0.27 | TX73_019545 | | MexW/MexI family multidrug efflux RND transporter permease subunit | low | > 86 |
| Rhodospirillum rubrum S1H | 0.46 | Rru_A1117 | | Secretion protein HlyD (NCBI) | 0.38 | Rru_A2094 | | Acriflavin resistance protein (NCBI) | low | > 58 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS02415 | | hemolysin D | 0.22 | HSERO_RS07655 | | nodulation protein | low | > 78 |
| Pantoea sp. MT58 | 0.43 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | 0.22 | IAI47_06865 | | multidrug efflux RND transporter permease subunit MdtC | low | > 76 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_2955 | | RND efflux system, membrane fusion protein CmeA | 0.25 | PfGW456L13_1771 | | RND multidrug efflux transporter; Acriflavin resistance protein | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | 0.26 | PFLU_RS24405 | | multidrug efflux RND transporter permease subunit | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_28725 | | RND transporter | 0.26 | AO356_18440 | | acriflavine resistance protein B | — | — |
| Pseudomonas simiae WCS417 | 0.41 | PS417_12590 | | RND transporter | 0.26 | PS417_22755 | | acriflavine resistance protein B | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | 0.26 | PFLU_RS24405 | | multidrug efflux RND transporter permease subunit | low | > 109 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | 0.23 | IAI46_18980 | | multidrug efflux RND transporter permease subunit MdtC | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_1660 | | RND efflux system, membrane fusion protein CmeA | 0.26 | Pf6N2E2_5614 | | RND multidrug efflux transporter; Acriflavin resistance protein | low | > 103 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS05740 | | efflux RND transporter periplasmic adaptor subunit | 0.23 | DDA3937_RS15270 | | multidrug efflux RND transporter permease subunit MdtC | low | > 74 |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_26840 | | RND transporter | 0.26 | AO353_04000 | | acriflavine resistance protein B | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_4007 | | Secretion protein HlyD | 0.23 | Psyr_2483 | | Acriflavin resistance protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_4007 | | Secretion protein HlyD | 0.23 | Psyr_2483 | | Acriflavin resistance protein | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.40 | Psest_0309 | | RND family efflux transporter, MFP subunit | 0.26 | Psest_1153 | | Cation/multidrug efflux pump | low | > 67 |
| Pseudomonas sp. RS175 | 0.40 | PFR28_02462 | | Multidrug resistance protein MexA | 0.26 | PFR28_03330 | | Multidrug efflux pump subunit AcrB | low | > 88 |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS23900 | | efflux RND transporter periplasmic adaptor subunit | 0.21 | RPSI07_RS05520 | | nodulation protein | low | > 81 |
| Pseudomonas sp. S08-1 | 0.40 | OH686_16045 | | Multidrug efflux system, membrane fusion component | 0.31 | OH686_22670 | | RND efflux system, inner membrane transporter | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.40 | Pf1N1B4_4773 | | RND efflux system, membrane fusion protein CmeA | 0.26 | Pf1N1B4_720 | | RND multidrug efflux transporter; Acriflavin resistance protein | — | — |
| Erwinia tracheiphila SCR3 | 0.40 | LU632_RS18180 | | efflux RND transporter periplasmic adaptor subunit | 0.23 | LU632_RS08690 | | MdtB/MuxB family multidrug efflux RND transporter permease subunit | — | — |
| Shewanella amazonensis SB2B | 0.40 | Sama_3553 | | multidrug resistance protein AcrA/AcrE family (RefSeq) | 0.33 | Sama_1905 | | AcrB/AcrD/AcrF family protein (RefSeq) | low | > 62 |
| Azospirillum sp. SherDot2 | 0.39 | MPMX19_05883 | | Multidrug resistance protein MexA | 0.31 | MPMX19_04343 | | Efflux pump membrane transporter BepE | low | > 112 |
| Variovorax sp. OAS795 | 0.39 | ABID97_RS00320 | | efflux RND transporter periplasmic adaptor subunit | 0.23 | ABID97_RS06490 | | efflux RND transporter permease subunit | low | > 91 |
| Enterobacter sp. TBS_079 | 0.39 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | 0.23 | MPMX20_03062 | | Multidrug resistance protein MdtC | low | > 85 |
| Variovorax sp. SCN45 | 0.39 | GFF3726 | | RND efflux system, membrane fusion protein | 0.25 | GFF3509 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system | low | > 127 |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_3318 | | RND family efflux transporter, MFP subunit | 0.23 | EX28DRAFT_0482 | | Cation/multidrug efflux pump | low | > 76 |
| Shewanella sp. ANA-3 | 0.39 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | 0.33 | Shewana3_1659 | | acriflavin resistance protein (RefSeq) | low | > 73 |
| Pseudomonas putida KT2440 | 0.39 | PP_3455 | | Multidrug efflux RND membrane fusion protein | 0.26 | PP_0906 | | putative Multidrug efflux RND transporter | low | > 96 |
| Shewanella oneidensis MR-1 | 0.39 | SO4693 | | multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) | 0.34 | SO1882 | | AcrB/AcrD/AcrF family protein (NCBI ptt file) | low | > 76 |
| Escherichia fergusonii Becca | 0.39 | EFB2_00559 | | Multidrug export protein AcrE | 0.22 | EFB2_01779 | | Multidrug resistance protein MdtC | low | > 86 |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS06120 | | efflux RND transporter periplasmic adaptor subunit | 0.22 | DZA65_RS16170 | | multidrug efflux RND transporter permease subunit MdtC | low | > 75 |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS05795 | | efflux RND transporter periplasmic adaptor subunit | 0.22 | HGI48_RS15350 | | multidrug efflux RND transporter permease subunit MdtC | low | > 71 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.38 | GFF2117 | | RND efflux system, membrane fusion protein CmeA | 0.22 | GFF3853 | | Multidrug transporter MdtC | low | > 78 |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_06815 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.22 | HEPCGN_02880 | mdtC | multidrug efflux RND transporter permease subunit MdtC | low | > 87 |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_08200 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.22 | OKFHMN_24190 | mdtC | multidrug efflux RND transporter permease subunit MdtC | low | > 80 |
| Escherichia coli BL21 | 0.38 | ECD_00414 | | multidrug efflux system | 0.22 | ECD_01981 | | multidrug efflux system, subunit C | low | > 61 |
| Escherichia coli ECOR27 | 0.38 | NOLOHH_01135 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.22 | NOLOHH_15535 | mdtC | multidrug efflux RND transporter permease subunit MdtC | low | > 75 |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_06255 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.22 | NIAGMN_22135 | mdtC | multidrug efflux RND transporter permease subunit MdtC | — | — |
| Escherichia coli ECRC62 | 0.38 | BNILDI_22550 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.22 | BNILDI_14450 | mdtC | multidrug efflux RND transporter permease subunit MdtC | low | > 75 |
| Escherichia coli BW25113 | 0.38 | b0463 | acrA | multidrug efflux system (NCBI) | 0.22 | b2076 | mdtC | multidrug efflux system, subunit C (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS02755 | | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.22 | ECOLIN_RS12205 | | multidrug efflux RND transporter permease subunit MdtC | — | — |
| Escherichia coli ECRC101 | 0.38 | MCAODC_27425 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.22 | MCAODC_20750 | mdtC | multidrug efflux RND transporter permease subunit MdtC | low | > 87 |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_11850 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.22 | JDDGAC_28300 | mdtC | multidrug efflux RND transporter permease subunit MdtC | low | > 86 |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_19765 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.22 | KEDOAH_03960 | mdtC | multidrug efflux RND transporter permease subunit MdtC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.38 | OHPLBJKB_03211 | | Multidrug efflux pump subunit AcrA | 0.22 | OHPLBJKB_01628 | | Multidrug resistance protein MdtC | low | > 73 |
| Shewanella loihica PV-4 | 0.38 | Shew_0031 | | RND family efflux transporter MFP subunit (RefSeq) | 0.34 | Shew_1852 | | acriflavin resistance protein (RefSeq) | low | > 60 |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | 0.25 | ABZR86_RS11745 | | efflux RND transporter permease subunit | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.38 | Xcc-8004.1793.1 | | RND efflux system, membrane fusion protein CmeA | 0.31 | Xcc-8004.1262.1 | | RND multidrug efflux transporter; Acriflavin resistance protein | low | > 74 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF3839 | | RND efflux system, membrane fusion protein CmeA | 0.32 | GFF4261 | | RND multidrug efflux transporter; Acriflavin resistance protein | low | > 90 |
| Azospirillum brasilense Sp245 | 0.37 | AZOBR_RS30180 | | hemolysin D | 0.31 | AZOBR_RS22130 | | acriflavin resistance protein | low | > 97 |
| Ralstonia sp. UNC404CL21Col | 0.37 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | 0.21 | ABZR87_RS19025 | | MdtB/MuxB family multidrug efflux RND transporter permease subunit | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.36 | HER17_RS15735 | | efflux RND transporter periplasmic adaptor subunit | 0.23 | HER17_RS06320 | | MdtB/MuxB family multidrug efflux RND transporter permease subunit | low | > 75 |
| Acidovorax sp. GW101-3H11 | 0.36 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | 0.31 | Ac3H11_482 | | RND multidrug efflux transporter; Acriflavin resistance protein | low | > 79 |
| Cupriavidus basilensis FW507-4G11 | 0.36 | RR42_RS20645 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.23 | RR42_RS20555 | | acriflavine resistance protein B | — | — |
| Bosea sp. OAE506 | 0.36 | ABIE41_RS01600 | | efflux RND transporter periplasmic adaptor subunit | 0.23 | ABIE41_RS20140 | | efflux RND transporter permease subunit | 0.26 | 32 |
| Alteromonas macleodii MIT1002 | 0.35 | MIT1002_00134 | | Acriflavine resistance protein A precursor | 0.40 | MIT1002_01303 | | Efflux pump membrane transporter BepE | low | > 70 |
| Dechlorosoma suillum PS | 0.35 | Dsui_3181 | | RND family efflux transporter, MFP subunit | 0.31 | Dsui_1555 | | cation/multidrug efflux pump | low | > 51 |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS34600 | | hemolysin D | 0.23 | BPHYT_RS29560 | | acriflavine resistance protein B | low | > 109 |
| Rhizobium sp. OAE497 | 0.34 | ABIE40_RS24220 | | efflux RND transporter periplasmic adaptor subunit | 0.70 | ABIE40_RS11655 | | efflux RND transporter permease subunit | low | > 107 |
| Sphingomonas koreensis DSMZ 15582 | 0.34 | Ga0059261_0560 | | RND family efflux transporter, MFP subunit | 0.32 | Ga0059261_3804 | | Cation/multidrug efflux pump | low | > 68 |
| Caulobacter crescentus NA1000 Δfur | 0.32 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | 0.29 | CCNA_01262 | | cation/multidrug efflux pump, AcrB family | low | > 67 |
| Caulobacter crescentus NA1000 | 0.32 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | 0.29 | CCNA_01262 | | cation/multidrug efflux pump, AcrB family | low | > 66 |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS04230 | | efflux RND transporter periplasmic adaptor subunit | 0.21 | ABCV34_RS14625 | | efflux RND transporter permease subunit | low | > 48 |
| Lysobacter sp. OAE881 | 0.28 | ABIE51_RS17985 | | efflux RND transporter periplasmic adaptor subunit | 0.32 | ABIE51_RS16985 | | efflux RND transporter permease subunit | low | > 62 |
| Parabacteroides merdae CL09T00C40 | 0.25 | HMPREF1078_RS00005 | | efflux RND transporter periplasmic adaptor subunit | 0.30 | HMPREF1078_RS05470 | | efflux RND transporter permease subunit | low | > 61 |
Not shown: 15 genomes with orthologs for SMc02868 only; 13 genomes with orthologs for SMc01457 only