| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc03228 | | YciI-like protein | 1.0 | SMc01235 | | excinuclease ABC subunit A | 0.30 | 15 |
| Rhizobium sp. OAE497 | 0.78 | ABIE40_RS18050 | | YciI-like protein | 0.89 | ABIE40_RS09360 | | excinuclease ABC subunit UvrA | low | > 107 |
| Agrobacterium fabrum C58 | 0.63 | Atu2649 | | hypothetical protein | 0.89 | Atu1513 | | ABC excinuclease subunit A | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.46 | Dshi_3413 | | YCII-related (RefSeq) | 0.67 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | low | > 64 |
| Caulobacter crescentus NA1000 | 0.39 | CCNA_00067 | | YciI-like protein | 0.70 | CCNA_02673 | | excinuclease ABC subunit A | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.39 | CCNA_00067 | | YciI-like protein | 0.70 | CCNA_02673 | | excinuclease ABC subunit A | low | > 67 |
| Azospirillum brasilense Sp245 | 0.39 | AZOBR_RS00285 | | hypothetical protein | 0.68 | AZOBR_RS15370 | | excinuclease ABC subunit A | 0.72 | 12 |
| Pseudomonas stutzeri RCH2 | 0.39 | Psest_1886 | | Uncharacterized protein conserved in bacteria | 0.59 | Psest_3576 | | excinuclease ABC, A subunit | low | > 67 |
| Phaeobacter inhibens DSM 17395 | 0.38 | PGA1_c35470 | | protein YciI | 0.66 | PGA1_c17370 | | uvrABC system protein A | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.37 | QEN71_RS38165 | | YciI family protein | 0.56 | QEN71_RS01825 | | excinuclease ABC subunit UvrA | low | > 153 |
| Pseudomonas sp. RS175 | 0.36 | PFR28_03321 | | Protein YciI | 0.59 | PFR28_03974 | | UvrABC system protein A | low | > 88 |
| Alteromonas macleodii MIT1002 | 0.36 | MIT1002_01424 | | YciI-like protein | 0.57 | MIT1002_00179 | | Excinuclease ABC subunit A | low | > 70 |
| Pseudomonas simiae WCS417 | 0.36 | PS417_22285 | | hypothetical protein | 0.59 | PS417_25395 | | excinuclease ABC subunit A | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.36 | PFLU_RS23925 | | YciI family protein | 0.59 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.14 | 37 |
| Dickeya dianthicola ME23 | 0.36 | DZA65_RS10900 | | YciI family protein | 0.57 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | low | > 75 |
| Pseudomonas fluorescens FW300-N2E3 | 0.36 | AO353_18510 | | hypothetical protein | 0.59 | AO353_06855 | | ABC-ATPase UvrA | low | > 101 |
| Pseudomonas fluorescens SBW25 | 0.36 | PFLU_RS23925 | | YciI family protein | 0.59 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas sp. S08-1 | 0.35 | OH686_20785 | | YciL protein | 0.59 | OH686_15495 | | excinuclease ABC subunit A | low | > 80 |
| Dickeya dadantii 3937 | 0.35 | DDA3937_RS10420 | | YciI family protein | 0.57 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | low | > 74 |
| Rahnella sp. WP5 | 0.35 | EX31_RS10020 | | YciI family protein | 0.57 | EX31_RS11990 | | excinuclease ABC subunit UvrA | low | > 89 |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_3549 | | YciL protein | 0.59 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.35 | AO356_18485 | | hypothetical protein | 0.59 | AO356_14785 | | ABC-ATPase UvrA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.35 | OHPLBJKB_02432 | | Protein YciI | 0.56 | OHPLBJKB_03983 | | UvrABC system protein A | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.35 | Psyr_3588 | | YCII-related protein | 0.59 | Psyr_4520 | | Excinuclease ABC subunit A | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.35 | PfGW456L13_4407 | | YciL protein | 0.59 | PfGW456L13_1283 | | Excinuclease ABC subunit A | low | > 87 |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS07555 | | YciI family protein | 0.56 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli BL21 | 0.35 | ECD_01225 | | putative DGPF domain-containing enzyme | 0.56 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | low | > 60 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.35 | Psyr_3588 | | YCII-related protein | 0.59 | Psyr_4520 | | Excinuclease ABC subunit A | — | — |
| Escherichia coli BW25113 | 0.35 | b1251 | yciI | orf, hypothetical protein (VIMSS) | 0.56 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.35 | EFB2_02674 | | Protein YciI | 0.56 | EFB2_04533 | | UvrABC system protein A | low | > 86 |
| Shewanella loihica PV-4 | 0.34 | Shew_2261 | | YciI-like protein (RefSeq) | 0.55 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | low | > 60 |
| Dechlorosoma suillum PS | 0.34 | Dsui_2887 | | hypothetical protein | 0.59 | Dsui_1622 | | excinuclease ABC, A subunit | low | > 51 |
| Dickeya dianthicola 67-19 | 0.34 | HGI48_RS10425 | | YciI family protein | 0.57 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | low | > 71 |
| Kangiella aquimarina DSM 16071 | 0.34 | B158DRAFT_2302 | | Uncharacterized protein conserved in bacteria | 0.58 | B158DRAFT_0885 | | excinuclease ABC, A subunit | low | > 40 |
| Escherichia coli ECRC101 | 0.34 | OKFHMN_28670 | yciI | YciI family protein | 0.56 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECOR27 | 0.34 | NOLOHH_20380 | yciI | YciI family protein | 0.56 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC99 | 0.34 | KEDOAH_25665 | yciI | YciI family protein | 0.56 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.34 | GFF2737 | | YciL protein | 0.56 | GFF1429 | | Excinuclease ABC subunit A | low | > 78 |
| Escherichia coli ECRC102 | 0.34 | NIAGMN_27565 | yciI | YciI family protein | 0.56 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC98 | 0.34 | JDDGAC_05905 | yciI | YciI family protein | 0.56 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC101 | 0.34 | MCAODC_21590 | yciI | YciI family protein | 0.56 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECOR38 | 0.34 | HEPCGN_25135 | yciI | YciI family protein | 0.56 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | low | > 85 |
| Marinobacter adhaerens HP15 | 0.33 | HP15_2225 | | YciI-like protein | 0.57 | HP15_406 | | excinuclease ABC, ATPase subunit (A) | low | > 73 |
| Pseudomonas fluorescens FW300-N2E2 | 0.33 | Pf6N2E2_5623 | | YciL protein | 0.59 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | low | > 103 |
| Acinetobacter radioresistens SK82 | 0.33 | MPMX26_02640 | | Protein YciI | 0.56 | MPMX26_02892 | | UvrABC system protein A | low | > 36 |
| Pectobacterium carotovorum WPP14 | 0.33 | HER17_RS10975 | | YciI family protein | 0.56 | HER17_RS03550 | | excinuclease ABC subunit UvrA | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.33 | CSW01_08565 | | hypothetical protein | 0.56 | CSW01_02080 | | UvrABC system protein A | low | > 62 |
| Magnetospirillum magneticum AMB-1 | 0.33 | AMB_RS21125 | | YciI family protein | 0.68 | AMB_RS12410 | | excinuclease ABC subunit UvrA | low | > 64 |
| Rhodanobacter denitrificans MT42 | 0.32 | LRK55_RS18180 | | YciI family protein | 0.57 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS00280 | | YciI family protein | 0.57 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | low | > 59 |
| Rhodospirillum rubrum S1H | 0.32 | Rru_A3572 | | YCII-related (NCBI) | 0.70 | Rru_A1752 | | Excinuclease ABC, A subunit (NCBI) | low | > 58 |
| Erwinia tracheiphila SCR3 | 0.32 | LU632_RS12835 | | YciI family protein | 0.56 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | low | > 74 |
| Serratia liquefaciens MT49 | 0.32 | IAI46_14115 | | YciI family protein | 0.56 | IAI46_22905 | | excinuclease ABC subunit UvrA | — | — |
| Enterobacter sp. TBS_079 | 0.32 | MPMX20_02577 | | Protein YciI | 0.56 | MPMX20_00276 | | UvrABC system protein A | low | > 85 |
| Pseudomonas putida KT2440 | 0.31 | PP_4502 | | putative enzyme | 0.59 | PP_0483 | | excinuclease (uvrABC system protein A) | — | — |
| Shewanella amazonensis SB2B | 0.31 | Sama_2138 | | YciI-like protein (RefSeq) | 0.55 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | low | > 62 |
| Klebsiella michiganensis M5al | 0.31 | BWI76_RS17195 | | hypothetical protein | 0.57 | BWI76_RS01950 | | excinuclease ABC subunit A | low | > 92 |
| Rhodanobacter sp. FW510-T8 | 0.31 | OKGIIK_07030 | | YciI family protein | 0.56 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | low | > 52 |
| Pantoea sp. MT58 | 0.30 | IAI47_09125 | | YciI family protein | 0.57 | IAI47_17815 | | excinuclease ABC subunit UvrA | low | > 76 |
| Enterobacter asburiae PDN3 | 0.30 | EX28DRAFT_0921 | | Uncharacterized protein conserved in bacteria | 0.56 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | low | > 76 |
| Shewanella oneidensis MR-1 | 0.30 | SO3036 | | conserved hypothetical protein (NCBI ptt file) | 0.56 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.30 | Shewana3_1504 | | YciI-like protein (RefSeq) | 0.56 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | low | > 73 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.2360.1 | | YciL protein | 0.57 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS02840 | | YciI family protein | 0.57 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | low | > 74 |
| Paraburkholderia graminis OAS925 | 0.29 | ABIE53_006363 | | uncharacterized protein YciI | 0.57 | ABIE53_000732 | | excinuclease ABC subunit A | low | > 113 |
| Azospirillum sp. SherDot2 | 0.29 | MPMX19_02041 | | Protein YciI | 0.70 | MPMX19_01152 | | UvrABC system protein A | low | > 112 |
| Variovorax sp. OAS795 | 0.29 | ABID97_RS29000 | | YciI family protein | 0.55 | ABID97_RS04340 | | excinuclease ABC subunit UvrA | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.28 | GFF1577 | | YciL protein | 0.55 | GFF2755 | | Excinuclease ABC subunit A | low | > 90 |
| Cupriavidus basilensis FW507-4G11 | 0.27 | RR42_RS32875 | | hypothetical protein | 0.57 | RR42_RS02145 | | excinuclease ABC subunit A | low | > 128 |
Not shown: 0 genomes with orthologs for SMc03228 only; 34 genomes with orthologs for SMc01235 only