Conservation of cofitness between RR42_RS11370 and RR42_RS13065 in Cupriavidus basilensis FW507-4G11

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS11370 ABC transporter ATP-binding protein 1.0 RR42_RS13065 ribonuclease R 0.53 10
Ralstonia solanacearum PSI07 0.91 RPSI07_RS16870 ABC-F family ATPase 0.79 RPSI07_RS18030 ribonuclease R low > 81
Ralstonia solanacearum GMI1000 0.91 RS_RS07315 ABC-F family ATPase 0.79 RS_RS06155 ribonuclease R low > 80
Ralstonia solanacearum IBSBF1503 0.91 RALBFv3_RS00635 ABC-F family ATPase 0.79 RALBFv3_RS15345 ribonuclease R low > 76
Ralstonia solanacearum UW163 0.91 UW163_RS13965 ABC-F family ATPase 0.79 UW163_RS12810 ribonuclease R — —
Ralstonia sp. UNC404CL21Col 0.90 ABZR87_RS12165 ABC-F family ATPase 0.77 ABZR87_RS10985 ribonuclease R low > 80
Paraburkholderia graminis OAS925 0.82 ABIE53_002379 ATPase subunit of ABC transporter with duplicated ATPase domains 0.65 ABIE53_001940 ribonuclease R low > 113
Paraburkholderia bryophila 376MFSha3.1 0.82 H281DRAFT_05171 ATPase components of ABC transporters with duplicated ATPase domains 0.65 H281DRAFT_00712 RNAse R low > 103
Burkholderia phytofirmans PsJN 0.82 BPHYT_RS11480 heme ABC transporter ATP-binding protein 0.66 BPHYT_RS08455 ribonuclease R low > 109
Paraburkholderia sabiae LMG 24235 0.82 QEN71_RS07090 ABC-F family ATPase 0.66 QEN71_RS22925 ribonuclease R low > 153
Herbaspirillum seropedicae SmR1 0.79 HSERO_RS11060 ABC transporter ATP-binding protein 0.64 HSERO_RS09290 ribonuclease R — —
Castellaniella sp019104865 MT123 0.73 ABCV34_RS03000 ABC-F family ATPase 0.50 ABCV34_RS06625 ribonuclease R low > 48
Dechlorosoma suillum PS 0.70 Dsui_0753 ATPase component of ABC transporters with duplicated ATPase domain 0.50 Dsui_3128 ribonuclease R low > 51
Pseudomonas sp. S08-1 0.68 OH686_00750 Bis-ABC ATPase YbiT 0.42 OH686_15910 ribonuclease R low > 80
Pseudomonas stutzeri RCH2 0.68 Psest_2115 ATPase components of ABC transporters with duplicated ATPase domains 0.41 Psest_0691 ribonuclease R low > 67
Pseudomonas putida KT2440 0.67 PP_2936 putative ATP-binding component of a transport system 0.43 PP_4880 exoribonuclease R low > 96
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_02893 putative ABC transporter ATP-binding protein YbiT 0.40 OHPLBJKB_03863 Ribonuclease R low > 73
Escherichia coli BL21 0.67 ECD_00787 ABC-F family putative regulatory ATPase 0.40 ECD_04046 exoribonuclease R, RNase R low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF717 Putative ATPase component of ABC transporter with duplicated ATPase domain 0.40 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.82 29
Escherichia coli BW25113 0.67 b0820 ybiT fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) 0.40 b4179 vacB putative enzyme (VIMSS) low > 76
Escherichia coli Nissle 1917 0.67 ECOLIN_RS04370 ABC-F family ATPase 0.40 ECOLIN_RS24265 ribonuclease R low > 55
Escherichia fergusonii Becca 0.67 EFB2_03285 putative ABC transporter ATP-binding protein YbiT 0.40 EFB2_04356 Ribonuclease R low > 86
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_3023 ABC transporter ATP-binding protein uup 0.43 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Shewanella amazonensis SB2B 0.67 Sama_1386 ABC transporter, ATP-binding protein (RefSeq) 0.39 Sama_3067 exoribonuclease II (RefSeq) low > 62
Escherichia coli ECRC102 0.67 NIAGMN_04205 ybiT ABC-F family ATPase 0.40 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli ECRC98 0.67 JDDGAC_09795 ybiT ABC-F family ATPase 0.40 JDDGAC_15860 rnr ribonuclease R low > 86
Escherichia coli ECRC62 0.67 BNILDI_20790 ybiT ABC-F family ATPase 0.40 BNILDI_07005 rnr ribonuclease R low > 75
Escherichia coli ECOR27 0.67 NOLOHH_22510 ybiT ABC-F family ATPase 0.40 NOLOHH_04485 rnr ribonuclease R low > 75
Erwinia tracheiphila SCR3 0.67 LU632_RS09525 ABC-F family ATPase 0.39 LU632_RS21750 rnr ribonuclease R low > 74
Marinobacter adhaerens HP15 0.67 HP15_2628 ABC transporter ATP-binding protein-like protein 0.40 HP15_622 exoribonuclease R low > 73
Escherichia coli ECRC99 0.67 KEDOAH_21750 ybiT ABC-F family ATPase 0.40 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECOR38 0.67 HEPCGN_01880 ybiT ABC-F family ATPase 0.40 HEPCGN_10450 rnr ribonuclease R 0.69 9
Escherichia coli ECRC100 0.67 OKFHMN_06160 ybiT ABC-F family ATPase 0.40 OKFHMN_12220 rnr ribonuclease R low > 80
Escherichia coli ECRC101 0.67 MCAODC_25375 ybiT ABC-F family ATPase 0.40 MCAODC_02735 rnr ribonuclease R low > 87
Dickeya dianthicola 67-19 0.66 HGI48_RS14235 ABC-F family ATPase 0.39 HGI48_RS17315 ribonuclease R low > 71
Dickeya dianthicola ME23 0.66 DZA65_RS14910 ABC-F family ATPase 0.38 DZA65_RS18405 ribonuclease R low > 75
Serratia liquefaciens MT49 0.66 IAI46_07820 ABC-F family ATPase 0.38 IAI46_01660 ribonuclease R low > 86
Pantoea sp. MT58 0.66 IAI47_13150 ABC-F family ATPase 0.39 IAI47_02625 ribonuclease R low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_01457 putative ABC transporter ATP-binding protein YbiT 0.39 MPMX20_00460 Ribonuclease R low > 85
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_07630 ABC-F family ATPase 0.40 CSW01_13155 ribonuclease R low > 62
Pectobacterium carotovorum WPP14 0.66 HER17_RS07215 ABC-F family ATPase 0.39 HER17_RS03835 ribonuclease R low > 75
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2147 ATPase components of ABC transporters with duplicated ATPase domains 0.39 EX28DRAFT_3376 ribonuclease R low > 76
Shewanella loihica PV-4 0.66 Shew_1676 ABC transporter-related protein (RefSeq) 0.40 Shew_3289 ribonuclease R (RefSeq) — —
Pseudomonas fluorescens SBW25 0.66 PFLU_RS13740 ABC-F family ATPase 0.44 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS13740 ABC-F family ATPase 0.44 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas simiae WCS417 0.66 PS417_13100 ABC transporter ATP-binding protein 0.44 PS417_02555 exoribonuclease R low > 88
Pseudomonas sp. RS175 0.66 PFR28_01696 putative ABC transporter ATP-binding protein YbiT 0.43 PFR28_05130 Ribonuclease R low > 88
Dickeya dadantii 3937 0.65 DDA3937_RS14260 ABC-F family ATPase 0.39 DDA3937_RS17260 ribonuclease R low > 74
Shewanella oneidensis MR-1 0.65 SO1690 ABC transporter, ATP-binding protein (NCBI ptt file) 0.40 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Klebsiella michiganensis M5al 0.65 BWI76_RS09040 ABC-F family ATPase 0.40 BWI76_RS02575 exoribonuclease R low > 92
Rahnella sp. WP5 0.65 EX31_RS18775 ABC-F family ATPase 0.38 EX31_RS08785 ribonuclease R low > 89
Shewanella sp. ANA-3 0.65 Shewana3_2760 ABC transporter related (RefSeq) 0.40 Shewana3_0697 RNAse R (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_2495 ABC transporter 0.43 Psyr_0579 RNAse R low > 86
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_2495 ABC transporter 0.43 Psyr_0579 RNAse R low > 86
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_27740 ABC transporter ATP-binding protein 0.44 AO356_08610 exoribonuclease R low > 104
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_795 ABC transporter ATP-binding protein uup 0.44 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R low > 103
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_4749 ABC transporter ATP-binding protein uup 0.43 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_26510 ABC transporter ATP-binding protein 0.43 AO353_13200 exoribonuclease R low > 101
Alteromonas macleodii MIT1002 0.59 MIT1002_00912 putative ABC transporter ATP-binding protein YheS 0.39 MIT1002_03606 Ribonuclease R low > 70
Fusobacterium nucleatum SB010 0.44 HUW76_03735 ATP-binding cassette domain-containing protein 0.18 HUW76_06085 ribonuclease R low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_06580 ABC-F family ATPase 0.20 CA264_17355 ribonuclease R low > 74
Bacteroides ovatus ATCC 8483 0.41 BACOVA_00551 ABC transporter, ATP-binding protein 0.22 BACOVA_02736 ribonuclease R — —
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS15635 ATP-binding cassette domain-containing protein 0.21 HMPREF1078_RS05885 ribonuclease R low > 61
Bacteroides thetaiotaomicron VPI-5482 0.40 BT1242 ABC transporter ATP-binding protein (NCBI ptt file) 0.22 BT3077 ribonuclease R (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS04050 ATP-binding cassette domain-containing protein 0.22 HMPREF1181_RS01550 ribonuclease R low > 56
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS15690 ATP-binding cassette domain-containing protein 0.22 HMPREF1058_RS10970 ribonuclease R low > 67
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS11680 ATP-binding cassette domain-containing protein 0.22 ABI39_RS06100 ribonuclease R low > 72

Not shown: 3 genomes with orthologs for RR42_RS11370 only; 23 genomes with orthologs for RR42_RS13065 only