Conservation of cofitness between RR42_RS27685 and RR42_RS04295 in Cupriavidus basilensis FW507-4G11

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS27685 multidrug efflux RND transporter permease subunit 1.0 RR42_RS04295 hypothetical protein 0.30 11
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS19400 efflux RND transporter permease subunit 0.63 ABZR87_RS16095 GNAT family N-acetyltransferase low > 80
Ralstonia solanacearum PSI07 0.76 RPSI07_RS05175 multidrug efflux RND transporter permease subunit 0.66 RPSI07_RS13155 N-acetyltransferase low > 81
Ralstonia solanacearum UW163 0.75 UW163_RS20755 multidrug efflux RND transporter permease subunit 0.64 UW163_RS09475 N-acetyltransferase — —
Ralstonia solanacearum GMI1000 0.75 RS_RS22490 multidrug efflux RND transporter permease subunit 0.66 RS_RS11785 GNAT family N-acetyltransferase low > 80
Ralstonia solanacearum IBSBF1503 0.75 RALBFv3_RS18375 multidrug efflux RND transporter permease subunit 0.64 RALBFv3_RS04195 N-acetyltransferase low > 76
Paraburkholderia sabiae LMG 24235 0.74 QEN71_RS20105 efflux RND transporter permease subunit 0.59 QEN71_RS24900 GNAT family N-acetyltransferase low > 153
Burkholderia phytofirmans PsJN 0.72 BPHYT_RS22515 multidrug efflux RND transporter permease subunit 0.59 BPHYT_RS05475 hypothetical protein low > 109
Azospirillum brasilense Sp245 0.72 AZOBR_RS28205 transporter 0.34 AZOBR_RS05150 hypothetical protein low > 97
Paraburkholderia graminis OAS925 0.72 ABIE53_004106 multidrug efflux pump 0.59 ABIE53_001344 putative N-acyltransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.72 H281DRAFT_03190 multidrug efflux pump 0.59 H281DRAFT_00217 hypothetical protein low > 103
Acidovorax sp. GW101-3H11 0.72 Ac3H11_258 RND multidrug efflux transporter; Acriflavin resistance protein 0.47 Ac3H11_516 COGs COG3146 low > 79
Variovorax sp. SCN45 0.71 GFF429 RND efflux system, inner membrane transporter 0.51 GFF1149 FIG110192: hypothetical protein low > 127
Variovorax sp. OAS795 0.71 ABID97_RS17350 efflux RND transporter permease subunit 0.52 ABID97_RS14840 GNAT family N-acetyltransferase low > 91
Azospirillum sp. SherDot2 0.71 MPMX19_02968 multidrug efflux RND transporter permease subunit OqxB28 0.34 MPMX19_00536 hypothetical protein low > 112
Magnetospirillum magneticum AMB-1 0.70 AMB_RS09480 multidrug efflux RND transporter permease subunit 0.36 AMB_RS17495 N-acetyltransferase low > 64
Sinorhizobium meliloti 1021 0.70 SMc01095 multidrug-efflux system transmembrane protein 0.33 SMc02105 hypothetical protein low > 103
Rhizobium sp. OAE497 0.70 ABIE40_RS14875 multidrug efflux RND transporter permease subunit 0.33 ABIE40_RS08880 GNAT family N-acetyltransferase low > 107
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS01560 transporter 0.59 HSERO_RS09450 hypothetical protein low > 78
Rhodospirillum rubrum S1H 0.68 Rru_A0886 Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) 0.35 Rru_A2458 Protein of unknown function DUF482 (NCBI) low > 58
Agrobacterium fabrum C58 0.67 Atu2483 AcrB/AcrD/AcrF family protein 0.32 Atu1370 hypothetical protein low > 89
Pseudomonas simiae WCS417 0.66 PS417_13190 transporter 0.37 PS417_20550 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS14260 efflux RND transporter permease subunit 0.37 PFLU_RS22240 N-acetyltransferase low > 109
Pseudomonas fluorescens SBW25 0.66 PFLU_RS14260 efflux RND transporter permease subunit 0.37 PFLU_RS22240 N-acetyltransferase low > 109
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_27605 transporter 0.35 AO356_04255 acyltransferase superfamily protein low > 104
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.35 Psyr_3828 Protein of unknown function DUF482 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.35 Psyr_3828 Protein of unknown function DUF482 low > 86
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_4864 Multidrug efflux transporter MexF 0.36 Pf1N1B4_3393 COGs COG3146 low > 87
Pseudomonas sp. RS175 0.65 PFR28_01728 multidrug efflux RND transporter permease subunit OqxB27 0.35 PFR28_00744 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_824 Multidrug efflux transporter MexF 0.36 Pf6N2E2_2687 COGs COG3146 low > 103
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_3060 Multidrug efflux transporter MexF 0.35 PfGW456L13_4463 COGs COG3146 low > 87
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_23960 transporter 0.36 AO353_18260 acyltransferase superfamily protein low > 101
Pseudomonas putida KT2440 0.64 PP_3426 Multidrug efflux RND transporter MexF 0.36 PP_4543 conserved protein of unknown function low > 96
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS15400 efflux RND transporter permease subunit 0.31 ABZR86_RS01795 GNAT family N-acetyltransferase low > 74
Rhodanobacter denitrificans MT42 0.64 LRK55_RS07890 efflux RND transporter permease subunit 0.29 LRK55_RS17480 peptidogalycan biosysnthesis protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS08140 multidrug efflux RND transporter permease subunit 0.29 LRK54_RS17255 peptidogalycan biosysnthesis protein low > 59
Pseudomonas stutzeri RCH2 0.64 Psest_2144 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.36 Psest_1621 Uncharacterized protein conserved in bacteria low > 67
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_14955 oqxB multidrug efflux RND transporter permease subunit 0.29 OKGIIK_07635 Peptidogalycan biosysnthesis/recognition low > 52
Pseudomonas sp. S08-1 0.63 OH686_01005 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.30 OH686_05475 hypothetical protein low > 80
Shewanella sp. ANA-3 0.62 Shewana3_1078 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.32 Shewana3_2486 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.62 SO3492 mexF RND multidrug efflux transporter MexF (NCBI ptt file) 0.31 SO1953 conserved hypothetical protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.59 MIT1002_02998 Efflux pump membrane transporter BepE 0.33 MIT1002_01126 hypothetical protein low > 70
Xanthomonas campestris pv. campestris strain 8004 0.58 Xcc-8004.3477.1 RND efflux system, inner membrane transporter CmeB 0.32 Xcc-8004.2751.1 COGs COG3146 low > 74
Pantoea sp. MT58 0.58 IAI47_10310 multidrug efflux RND transporter permease subunit OqxB 0.36 IAI47_01195 N-acetyltransferase low > 76
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_0436 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.36 Ga0059261_1390 Uncharacterized protein conserved in bacteria low > 68
Rahnella sp. WP5 0.55 EX31_RS01495 multidrug efflux RND transporter permease subunit 0.35 EX31_RS05275 N-acetyltransferase low > 89
Lysobacter sp. OAE881 0.54 ABIE51_RS01060 multidrug efflux RND transporter permease subunit 0.35 ABIE51_RS11470 GNAT family N-acetyltransferase low > 62
Shewanella loihica PV-4 0.45 Shew_1164 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.33 Shew_2157 hypothetical protein (RefSeq) low > 60
Rhodopseudomonas palustris CGA009 0.39 TX73_015325 efflux RND transporter permease subunit 0.35 TX73_016230 GNAT family N-acetyltransferase low > 86

Not shown: 10 genomes with orthologs for RR42_RS27685 only; 10 genomes with orthologs for RR42_RS04295 only