| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_1407 | | Protein of unknown function DUF28 | 1.0 | Psyr_5088 | | regulatory protein, LuxR:Response regulator receiver | 0.45 | 3 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_1407 | | Protein of unknown function DUF28 | 1.00 | Psyr_5088 | | regulatory protein, LuxR:Response regulator receiver | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_1850 | | FIG000859: hypothetical protein YebC | 0.36 | PfGW456L13_3749 | | Nitrogen regulation protein NR(I) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_5534 | | FIG000859: hypothetical protein YebC | 0.38 | Pf6N2E2_1724 | | DNA-binding response regulator, LuxR family | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.89 | AO356_18010 | | hypothetical protein | 0.68 | AO356_22615 | | nodulation protein NolW | — | — |
| Pseudomonas sp. RS175 | 0.89 | PFR28_03415 | | Transcriptional regulatory protein PmpR | 0.67 | PFR28_02521 | | Response regulator protein TmoT | — | — |
| Pseudomonas simiae WCS417 | 0.86 | PS417_22460 | | hypothetical protein | 0.41 | PS417_10320 | | hypothetical protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_640 | | FIG000859: hypothetical protein YebC | 0.52 | Pf1N1B4_4408 | | two-component response regulator | — | — |
| Pseudomonas putida KT2440 | 0.83 | PP_1214 | | putative transcriptional regulatory protein | 0.38 | PP_3551 | | DNA-binding response regulator, LuxR family | low | > 96 |
| Pseudomonas sp. S08-1 | 0.75 | OH686_19120 | | Probable transcriptional regulatory protein YebC | 0.50 | OH686_18645 | | Two-component transcriptional response regulator, LuxR family | low | > 80 |
| Shewanella oneidensis MR-1 | 0.70 | SO2432 | | conserved hypothetical protein TIGR01033 (NCBI ptt file) | 0.31 | SO4157 | | DNA-binding response regulator (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.70 | Shewana3_1954 | | hypothetical protein (RefSeq) | 0.31 | Shewana3_3697 | | two component LuxR family transcriptional regulator (RefSeq) | low | > 73 |
| Pantoea sp. MT58 | 0.69 | IAI47_08435 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.40 | IAI47_20275 | | response regulator transcription factor | low | > 76 |
| Shewanella loihica PV-4 | 0.68 | Shew_2078 | | hypothetical protein (RefSeq) | 0.42 | Shew_3240 | | two component LuxR family transcriptional regulator (RefSeq) | — | — |
| Dickeya dadantii 3937 | 0.68 | DDA3937_RS10065 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.67 | DDA3937_RS07235 | | response regulator transcription factor | low | > 74 |
| Shewanella amazonensis SB2B | 0.68 | Sama_1842 | | hypothetical protein (RefSeq) | 0.32 | Sama_3183 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Serratia liquefaciens MT49 | 0.67 | IAI46_14635 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.29 | IAI46_04860 | | response regulator transcription factor | low | > 86 |
| Enterobacter asburiae PDN3 | 0.67 | EX28DRAFT_0693 | | DNA-binding regulatory protein, YebC/PmpR family | 0.38 | EX28DRAFT_3507 | | Response regulator | low | > 76 |
| Enterobacter sp. TBS_079 | 0.67 | MPMX20_02769 | | putative transcriptional regulatory protein YebC | 0.25 | MPMX20_01965 | | Response regulator protein TmoT | low | > 85 |
| Klebsiella michiganensis M5al | 0.67 | BWI76_RS18160 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.28 | BWI76_RS14640 | | DNA-binding response regulator | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.67 | GFF1645 | | FIG000859: hypothetical protein YebC | 0.28 | GFF3576 | | Tetrathionate reductase two-component response regulator | low | > 78 |
| Marinobacter adhaerens HP15 | 0.62 | HP15_2043 | | protein YebC | 0.39 | HP15_1053 | | two component transcriptional regulator, LuxR family | low | > 73 |
| Herbaspirillum seropedicae SmR1 | 0.57 | HSERO_RS17750 | | transcriptional regulator | 0.42 | HSERO_RS22535 | | LuxR family transcriptional regulator | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_001546 | | YebC/PmpR family DNA-binding regulatory protein | 0.54 | ABIE53_001505 | | FixJ family two-component response regulator | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_04522 | | DNA-binding regulatory protein, YebC/PmpR family | 0.51 | H281DRAFT_03395 | | two component transcriptional regulator, LuxR family | — | — |
| Burkholderia phytofirmans PsJN | 0.56 | BPHYT_RS06410 | | transcriptional regulator | 0.50 | BPHYT_RS11910 | | chemotaxis protein CheY | — | — |
| Dechlorosoma suillum PS | 0.55 | Dsui_0489 | | DNA-binding regulatory protein, YebC/PmpR family | 0.40 | Dsui_2511 | | response regulator | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.55 | RR42_RS04735 | | hypothetical protein | 0.50 | RR42_RS25965 | | LuxR family transcriptional regulator | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.55 | QEN71_RS24395 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.53 | QEN71_RS39350 | | response regulator transcription factor | — | — |
| Ralstonia solanacearum PSI07 | 0.53 | RPSI07_RS13685 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.36 | RPSI07_RS15805 | | DNA-binding response regulator | — | — |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS15405 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.36 | ABZR87_RS13480 | | response regulator transcription factor | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS03540 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.36 | RALBFv3_RS01680 | | DNA-binding response regulator | — | — |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS10990 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.36 | RS_RS08045 | | DNA-binding response regulator | 0.33 | 40 |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS10130 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.36 | UW163_RS14990 | | DNA-binding response regulator | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.51 | GFF4523 | | FIG000859: hypothetical protein YebC | 0.35 | GFF1673 | | Nitrogen regulation protein NR(I) | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.51 | ABCV34_RS02555 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.39 | ABCV34_RS04170 | | response regulator transcription factor | — | — |
| Variovorax sp. SCN45 | 0.51 | GFF303 | | Probable transcriptional regulatory protein YebC | 0.36 | GFF965 | | Two-component transcriptional response regulator, LuxR family | — | — |
| Variovorax sp. OAS795 | 0.50 | ABID97_RS16740 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.44 | ABID97_RS26300 | | response regulator | — | — |
| Acidovorax sp. GW101-3H11 | 0.50 | Ac3H11_2422 | | FIG000859: hypothetical protein | 0.35 | Ac3H11_4095 | | Nitrogen regulation protein NR(I) | — | — |
| Lysobacter sp. OAE881 | 0.50 | ABIE51_RS05035 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.55 | ABIE51_RS11970 | | response regulator transcription factor | low | > 62 |
| Sinorhizobium meliloti 1021 | 0.48 | SMc03969 | | hypothetical protein | 0.40 | SM_b20869 | | two-component response regulator protein | low | > 103 |
| Dinoroseobacter shibae DFL-12 | 0.47 | Dshi_2762 | | protein of unknown function DUF28 (RefSeq) | 0.34 | Dshi_2568 | | two component transcriptional regulator, LuxR family (RefSeq) | low | > 64 |
| Agrobacterium fabrum C58 | 0.47 | Atu3727 | | hypothetical protein | 0.49 | Atu4774 | | two component response regulator | low | > 89 |
| Rhizobium sp. OAE497 | 0.46 | ABIE40_RS15665 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.48 | ABIE40_RS15215 | | response regulator | low | > 107 |
| Rhodopseudomonas palustris CGA009 | 0.45 | TX73_005640 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.48 | TX73_010870 | | response regulator | low | > 86 |
| Azospirillum sp. SherDot2 | 0.44 | MPMX19_00695 | | putative transcriptional regulatory protein | 0.50 | MPMX19_03583 | | Response regulator protein TodT | — | — |
| Azospirillum brasilense Sp245 | 0.44 | AZOBR_RS09035 | | transcriptional regulator | 0.54 | AZOBR_RS17625 | | Nodulation protein W | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.42 | Ga0059261_0824 | | DNA-binding regulatory protein, YebC/PmpR family | 0.33 | Ga0059261_3828 | | two component transcriptional regulator, LuxR family | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.41 | ABZR86_RS10850 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.32 | ABZR86_RS13745 | | response regulator | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.39 | CCNA_03352 | | YebC/PmpR transcriptional regulator | 0.34 | CCNA_00795 | | two-component response regulator FixJ | low | > 67 |
| Caulobacter crescentus NA1000 | 0.39 | CCNA_03352 | | YebC/PmpR transcriptional regulator | 0.34 | CCNA_00795 | | two-component response regulator FixJ | low | > 66 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.37 | A4249_RS15840 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.30 | A4249_RS15535 | | response regulator | — | — |
Not shown: 50 genomes with orthologs for Psyr_1407 only; 0 genomes with orthologs for Psyr_5088 only