Conservation of cofitness between Psyr_3742 and Psyr_4687 in Pseudomonas syringae pv. syringae B728a

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 1.0 Psyr_4687 biotin synthase 0.45 16
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 1.00 Psyr_4687 biotin synthase low > 86
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.94 AO353_07525 biotin synthase low > 101
Pseudomonas sp. DMC3 0.75 GFF4698 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.94 GFF76 Biotin synthase low > 89
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.95 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) low > 103
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.95 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.95 AO356_14135 biotin synthase low > 104
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.95 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) 0.33 52
Pseudomonas simiae WCS417 0.73 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.95 PS417_26005 biotin synthase low > 88
Pseudomonas sp. RS175 0.73 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.94 PFR28_04103 Biotin synthase low > 88
Pseudomonas lactucae CFBP13502 0.73 GEMAOFIL_02096 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.94 GEMAOFIL_05322 Biotin synthase low > 96
Pseudomonas fluorescens SBW25 0.72 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.95 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.95 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas sp. SVBP6 0.71 COO64_RS06835 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.94 COO64_RS22725 bioB biotin synthase BioB low > 93
Pseudomonas orientalis W4I3 0.71 QF045_RS21225 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.94 QF045_RS00415 biotin synthase BioB low > 93
Pseudomonas sp. BP01 0.70 JOY50_RS16225 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.93 JOY50_RS17930 bioB biotin synthase BioB low > 84
Pseudomonas sp. S08-1 0.68 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.89 OH686_10355 biotin synthase 0.70 25
Pseudomonas putida KT2440 0.68 PP_1751 methyltransferase/FAD-dependent oxidoreductase 0.94 PP_0362 Biotin synthase low > 96
Pseudomonas segetis P6 0.66 MPMX49_02868 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.89 MPMX49_00759 Biotin synthase low > 75
Pseudomonas stutzeri RCH2 0.62 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.89 Psest_0411 biotin synthetase low > 67
Pseudomonas aeruginosa PA14 0.62 IKLFDK_17740 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.89 IKLFDK_22935 biotin synthase BioB low > 98
Pseudomonas aeruginosa PUPa3 0.62 DQ20_RS41435 mnmC;go_function=tRNA bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.89 DQ20_RS36825 bioB;go_function=biotin biotin synthase BioB low > 101
Pseudomonas aeruginosa MRSN321 0.62 DY961_RS15640 mnmC;go_function=tRNA bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.89 DY961_RS22505 bioB;go_function=biotin biotin synthase BioB — —
Pantoea agglomerans CFBP13505 P0401 0.33 PagCFBP13505_RS00130 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 PagCFBP13505_RS03770 biotin synthase BioB low > 74
Pantoea sp. MT58 0.32 IAI47_06175 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 IAI47_13530 biotin synthase BioB low > 76
Escherichia coli ECRC101 0.32 MCAODC_13680 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 MCAODC_25615 bioB biotin synthase BioB low > 87
Escherichia coli ECRC99 0.32 KEDOAH_05555 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia coli ECRC100 0.32 OKFHMN_22640 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 OKFHMN_06400 bioB biotin synthase BioB low > 79
Escherichia coli ECRC98 0.32 JDDGAC_26600 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 JDDGAC_10035 bioB biotin synthase BioB low > 87
Escherichia coli BL21 0.32 ECD_02249 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme 0.66 ECD_00742 biotin synthase low > 61
Escherichia coli ECRC102 0.32 NIAGMN_20415 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 NIAGMN_04445 bioB biotin synthase BioB low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_01381 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.66 OHPLBJKB_02938 Biotin synthase low > 74
Escherichia coli BW25113 0.32 b2324 b2324 putative peptidase (VIMSS) 0.66 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli ECOR27 0.32 NOLOHH_14275 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 NOLOHH_22770 bioB biotin synthase BioB low > 76
Escherichia coli ECRC62 0.32 BNILDI_13195 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 BNILDI_21040 bioB biotin synthase BioB low > 75
Escherichia coli ECOR38 0.32 HEPCGN_21845 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 HEPCGN_01640 bioB biotin synthase BioB low > 88
Escherichia fergusonii Becca 0.31 EFB2_01534 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.66 EFB2_03330 Biotin synthase low > 86
Escherichia coli Nissle 1917 0.31 ECOLIN_RS13465 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 ECOLIN_RS04130 biotin synthase BioB low > 55
Erwinia tracheiphila SCR3 0.31 LU632_RS07800 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 LU632_RS09130 bioB biotin synthase BioB — —
Erwinia tracheiphila HP pepo 2.2 0.31 IJEDHG_17850 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 IJEDHG_19565 bioB biotin synthase BioB — —
Enterobacter asburiae PDN3 0.31 EX28DRAFT_0280 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.65 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Marinobacter adhaerens HP15 0.31 HP15_1540 protein YfcK 0.71 HP15_2486 biotin synthase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF1945 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.65 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Erwinia amylovora T8 0.30 OLJFJH_11180 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 OLJFJH_16760 biotin synthase BioB low > 58
Klebsiella pneumoniae MKP103 0.30 KDGMDA_27245 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 KDGMDA_17025 biotin synthase BioB low > 95
Enterobacter sp. TBS_079 0.30 MPMX20_03259 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.65 MPMX20_01403 Biotin synthase low > 85
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_10535 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.69 CSW01_05645 biotin synthase low > 62
Klebsiella michiganensis M5al 0.30 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 BWI76_RS08760 biotin synthase low > 92
Rahnella sp. WP5 0.30 EX31_RS19660 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 EX31_RS23695 biotin synthase BioB low > 89
Methylophilus sp. DMC18 0.30 GFF715 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.54 GFF1682 Biotin synthase — —
Dickeya dianthicola 67-19 0.29 HGI48_RS14485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.65 HGI48_RS08675 biotin synthase BioB low > 71
Serratia liquefaciens MT49 0.29 IAI46_18000 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 IAI46_06525 biotin synthase BioB low > 87
Dickeya dianthicola ME23 0.29 DZA65_RS15420 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.65 DZA65_RS08965 biotin synthase BioB low > 75
Dickeya dadantii 3937 0.29 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.65 DDA3937_RS08510 biotin synthase BioB low > 74
Pectobacterium carotovorum WPP14 0.28 HER17_RS06960 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.65 HER17_RS13460 biotin synthase BioB low > 75
Paraburkholderia graminis OAS925 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.58 ABIE53_000577 biotin synthase low > 113
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.58 BPHYT_RS02150 biotin synthase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.58 H281DRAFT_02097 biotin synthase low > 103
Dechlorosoma suillum PS 0.27 Dsui_2868 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein 0.52 Dsui_1297 biotin synthetase low > 51
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.60 ABZR87_RS06265 biotin synthase BioB low > 80
Paraburkholderia sabiae LMG 24235 0.27 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.58 QEN71_RS01085 biotin synthase BioB — —
Ralstonia solanacearum PSI07 0.26 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.60 RPSI07_RS22850 biotin synthase BioB low > 81
Ralstonia solanacearum GMI1000 0.26 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.60 RS_RS01305 biotin synthase low > 80
Alteromonas macleodii MIT1002 0.26 MIT1002_02542 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.69 MIT1002_01379 Biotin synthase low > 70
Ralstonia solanacearum IBSBF1503 0.26 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.60 RALBFv3_RS10465 biotin synthase BioB low > 76
Ralstonia solanacearum UW163 0.26 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.60 UW163_RS03115 biotin synthase BioB — —
Acinetobacter baumannii LAC-4 0.23 RR41_RS02870 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.60 RR41_RS11800 biotin synthase BioB — —
Acinetobacter radioresistens SK82 0.22 MPMX26_02642 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.58 MPMX26_01785 Biotin synthase low > 36
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.57 RR42_RS00940 biotin synthase low > 128
Acidovorax sp. GW101-3H11 0.18 Ac3H11_579 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.52 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) low > 79
Kangiella aquimarina DSM 16071 0.17 B158DRAFT_1306 Uncharacterized conserved protein 0.66 B158DRAFT_0864 biotin synthase (EC 2.8.1.6) — —
Variovorax sp. OAS795 0.17 ABID97_RS15455 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.51 ABID97_RS13955 biotin synthase BioB low > 91
Castellaniella sp019104865 MT123 0.16 ABCV34_RS09580 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.55 ABCV34_RS15280 biotin synthase BioB low > 48
Caulobacter crescentus NA1000 0.16 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC 0.53 CCNA_03636 biotin synthase low > 66
Caulobacter crescentus NA1000 Δfur 0.16 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC 0.53 CCNA_03636 biotin synthase low > 67
Variovorax sp. SCN45 0.15 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.52 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Shewanella sp. ANA-3 0.15 Shewana3_1474 FAD dependent oxidoreductase (RefSeq) 0.66 Shewana3_2519 biotin synthase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.15 SO3073 conserved hypothetical protein (NCBI ptt file) 0.66 SO2740 bioB biotin synthase (NCBI ptt file) — —
Herbaspirillum seropedicae SmR1 0.15 HSERO_RS23825 hypothetical protein 0.51 HSERO_RS12235 biotin synthase low > 78

Not shown: 1 genomes with orthologs for Psyr_3742 only; 33 genomes with orthologs for Psyr_4687 only