Conservation of cofitness between Psyr_5018 and Psyr_4148 in Pseudomonas syringae pv. syringae B728a

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_5018 NAD(P) transhydrogenase, beta subunit 1.0 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P 0.35 20
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_5018 NAD(P) transhydrogenase, beta subunit 1.00 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_10870 NAD synthetase 0.81 AO356_07040 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_4040 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.81 Pf6N2E2_3268 Ribosome hibernation protein YhbH low > 103
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_11080 NAD synthetase 0.80 AO353_05185 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_1820 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.81 Pf1N1B4_1081 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS00545 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.75 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS00545 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.75 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas sp. RS175 0.87 PFR28_04723 NAD(P) transhydrogenase subunit beta 0.90 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_558 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.81 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas simiae WCS417 0.87 PS417_00560 NAD synthetase 0.79 PS417_04340 ribosome hibernation promoting factor HPF low > 88
Pseudomonas putida KT2440 0.85 PP_0155 pyridine nucleotide transhydrogenase, beta subunit 0.78 PP_0951 Ribosome hibernation promoting factor low > 96
Pseudomonas stutzeri RCH2 0.85 Psest_4205 NAD/NADP transhydrogenase beta subunit 0.65 Psest_3314 ribosomal subunit interface protein low > 67
Pseudomonas sp. S08-1 0.80 OH686_11935 NAD(P) transhydrogenase subunit beta 0.79 OH686_08550 Ribosome hibernation promoting factor Hpf low > 80
Ralstonia solanacearum PSI07 0.76 RPSI07_RS02775 NAD synthetase 0.48 RPSI07_RS22135 ribosomal subunit interface protein low > 81
Ralstonia sp. UNC404CL21Col 0.75 ABZR87_RS01355 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.45 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80
Variovorax sp. OAS795 0.74 ABID97_RS11590 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.46 ABID97_RS04490 ribosome-associated translation inhibitor RaiA — —
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS25230 NAD synthetase 0.49 RR42_RS02080 ribosome hibernation promoting factor low > 128
Castellaniella sp019104865 MT123 0.73 ABCV34_RS10180 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.43 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA low > 48
Paraburkholderia graminis OAS925 0.73 ABIE53_000814 NAD(P) transhydrogenase subunit beta 0.43 ABIE53_000717 putative sigma-54 modulation protein low > 113
Ralstonia solanacearum UW163 0.73 UW163_RS07840 NAD(P) transhydrogenase subunit beta 0.47 UW163_RS02415 ribosomal subunit interface protein — —
Ralstonia solanacearum IBSBF1503 0.73 RALBFv3_RS05785 NAD(P) transhydrogenase subunit beta 0.47 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Paraburkholderia bryophila 376MFSha3.1 0.72 H281DRAFT_04655 NAD(P) transhydrogenase subunit beta 0.43 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P low > 103
Ralstonia solanacearum GMI1000 0.72 RS_RS13675 NAD(P) transhydrogenase subunit beta 0.47 RS_RS02015 ribosomal subunit interface protein low > 80
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS26720 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.42 QEN71_RS01750 ribosome-associated translation inhibitor RaiA low > 153
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS03380 NAD(P) transhydrogenase subunit beta 0.43 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.71 GFF2606 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.47 GFF2612 Ribosome hibernation protein YhbH low > 90
Acinetobacter radioresistens SK82 0.51 MPMX26_00530 NAD(P) transhydrogenase subunit beta 0.31 MPMX26_02591 Ribosome hibernation promoting factor — —
Acidovorax sp. GW101-3H11 0.49 Ac3H11_662 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.47 Ac3H11_681 Ribosome hibernation protein YhbH low > 79
Shewanella amazonensis SB2B 0.49 Sama_2841 pntB pyridine nucleotide transhydrogenase (RefSeq) 0.59 Sama_3089 ribosomal subunit interface protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.48 SO3741 pntB NAD(P) transhydrogenase, beta subunit (NCBI ptt file) 0.56 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) low > 76
Rahnella sp. WP5 0.48 EX31_RS07210 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.55 EX31_RS12395 ribosome hibernation promoting factor low > 89
Escherichia fergusonii Becca 0.48 EFB2_02390 NAD(P) transhydrogenase subunit beta 0.50 EFB2_00620 Ribosome hibernation promoting factor low > 86
Escherichia coli ECOR27 0.48 NOLOHH_18200 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 NOLOHH_09735 Ribosome hibernation promoting factor low > 75
Escherichia coli BL21 0.48 ECD_01571 pyridine nucleotide transhydrogenase, beta subunit 0.50 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_02124 NAD(P) transhydrogenase subunit beta 0.50 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 73
Escherichia coli ECRC99 0.48 KEDOAH_00410 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli ECRC101 0.48 MCAODC_17715 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 MCAODC_08455 Ribosome hibernation promoting factor low > 87
Escherichia coli ECOR38 0.48 HEPCGN_06070 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 HEPCGN_16810 Ribosome hibernation promoting factor low > 87
Escherichia coli BW25113 0.48 b1602 pntB pyridine nucleotide transhydrogenase (NCBI) 0.50 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) low > 76
Escherichia coli ECRC100 0.48 OKFHMN_27695 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 OKFHMN_17935 Ribosome hibernation promoting factor low > 80
Escherichia coli Nissle 1917 0.48 ECOLIN_RS08950 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 ECOLIN_RS18430 ribosome hibernation promoting factor low > 55
Escherichia coli ECRC98 0.48 JDDGAC_02285 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 JDDGAC_21560 Ribosome hibernation promoting factor 0.66 51
Escherichia coli ECRC102 0.48 NIAGMN_00380 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 NIAGMN_15695 Ribosome hibernation promoting factor — —
Escherichia coli ECRC62 0.48 BNILDI_16990 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 BNILDI_01800 Ribosome hibernation promoting factor 0.75 32
Serratia liquefaciens MT49 0.47 IAI46_13270 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.54 IAI46_22475 ribosome hibernation promoting factor low > 86
Pectobacterium carotovorum WPP14 0.47 HER17_RS10515 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.54 HER17_RS20065 ribosome hibernation promoting factor low > 75
Shewanella sp. ANA-3 0.47 Shewana3_0853 pntB pyridine nucleotide transhydrogenase (RefSeq) 0.58 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) 0.33 67
Klebsiella michiganensis M5al 0.47 BWI76_RS16200 NAD(P) transhydrogenase subunit beta 0.50 BWI76_RS25270 ribosome hibernation promoting factor low > 92
Dickeya dadantii 3937 0.47 DDA3937_RS10960 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.53 DDA3937_RS01525 ribosome hibernation promoting factor low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF1795 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.50 GFF2947 Ribosome hibernation protein YhbH low > 78
Enterobacter sp. TBS_079 0.46 MPMX20_02032 NAD(P) transhydrogenase subunit beta 0.49 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Dickeya dianthicola 67-19 0.46 HGI48_RS10910 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.52 HGI48_RS01440 ribosome hibernation promoting factor low > 71
Dickeya dianthicola ME23 0.46 DZA65_RS11370 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.52 DZA65_RS01505 ribosome hibernation promoting factor low > 75
Enterobacter asburiae PDN3 0.46 EX28DRAFT_1543 NAD/NADP transhydrogenase beta subunit 0.48 EX28DRAFT_3257 ribosomal subunit interface protein low > 76
Erwinia tracheiphila SCR3 0.46 LU632_RS11430 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.50 LU632_RS21285 hpf ribosome hibernation promoting factor low > 74
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_17045 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.49 CSW01_12820 ribosome hibernation promoting factor low > 62
Pantoea sp. MT58 0.45 IAI47_09570 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.49 IAI47_17190 ribosome hibernation promoting factor low > 76
Shewanella loihica PV-4 0.42 Shew_0662 NAD(P) transhydrogenase, beta subunit (RefSeq) 0.62 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.39 MIT1002_03907 NAD(P) transhydrogenase subunit beta 0.59 MIT1002_00826 Ribosome hibernation promoting factor 0.85 21
Lysobacter sp. OAE881 0.37 ABIE51_RS05560 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.43 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA low > 62
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS22120 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.33 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS03825 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.36 LRK54_RS12870 ribosome-associated translation inhibitor RaiA low > 59
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_10675 pntB NAD(P) transhydrogenase subunit beta 0.36 OKGIIK_02260 raiA ribosomal subunit interface protein low > 52
Rhodanobacter denitrificans MT42 0.33 LRK55_RS03575 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.36 LRK55_RS12570 ribosome-associated translation inhibitor RaiA low > 63
Dechlorosoma suillum PS 0.31 Dsui_2937 NAD/NADP transhydrogenase beta subunit 0.48 Dsui_0703 ribosomal subunit interface protein low > 51

Not shown: 19 genomes with orthologs for Psyr_5018 only; 9 genomes with orthologs for Psyr_4148 only