Conservation of cofitness between Psyr_3831 and Psyr_1250 in Pseudomonas syringae pv. syringae B728a

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3831 ATP-dependent helicase HrpA 1.0 Psyr_1250 conserved hypothetical protein 0.37 18
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3831 ATP-dependent helicase HrpA 1.00 Psyr_1250 conserved hypothetical protein low > 86
Pseudomonas simiae WCS417 0.89 PS417_20575 ATP-dependent helicase HrpA 0.83 PS417_23135 GTP-binding protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.83 PFLU_RS24790 tetratricopeptide repeat protein low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.83 PFLU_RS24790 tetratricopeptide repeat protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.81 Pf1N1B4_852 Mlr7403 protein — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.80 Pf6N2E2_3176 Mlr7403 protein — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_18225 ATP-dependent RNA helicase HrpA 0.83 AO353_15900 GTP-binding protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_04280 ATP-dependent RNA helicase HrpA 0.81 AO356_06580 GTP-binding protein low > 104
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.79 PfGW456L13_4860 Mlr7403 protein — —
Pseudomonas sp. RS175 0.88 PFR28_00739 hypothetical protein 0.81 PFR28_00299 hypothetical protein low > 88
Pseudomonas putida KT2440 0.83 PP_4546 ATP-dependent helicase HrpA 0.82 PP_0855 conserved protein of unknown function low > 96
Pseudomonas stutzeri RCH2 0.80 Psest_1339 ATP-dependent helicase HrpA 0.70 Psest_1264 Uncharacterized protein conserved in bacteria — —
Pseudomonas sp. S08-1 0.80 OH686_05730 RNA helicase HrpA 0.75 OH686_17540 UPF0070 protein YfgM 0.74 60
Marinobacter adhaerens HP15 0.49 HP15_1863 RNA helicase, ATP-dependent DEAH box, HrpA type 0.24 HP15_1495 conserved hypothetical protein — —
Shewanella loihica PV-4 0.48 Shew_1767 ATP-dependent helicase HrpA (RefSeq) 0.24 Shew_1292 tetratricopeptide TPR_4 (RefSeq) — —
Serratia liquefaciens MT49 0.47 IAI46_13330 ATP-dependent RNA helicase HrpA 0.18 IAI46_19265 YfgM family protein low > 86
Shewanella amazonensis SB2B 0.47 Sama_1619 ATP-dependent helicase HrpA (RefSeq) 0.24 Sama_2363 hypothetical protein (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.17 GFF2410 Mlr7403 protein low > 78
Shewanella sp. ANA-3 0.47 Shewana3_1897 ATP-dependent helicase HrpA (RefSeq) 0.22 Shewana3_1231 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.47 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) 0.21 SO3310 conserved hypothetical protein (NCBI ptt file) — —
Pectobacterium carotovorum WPP14 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.19 HER17_RS06110 YfgM family protein low > 75
Dickeya dadantii 3937 0.47 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.20 DDA3937_RS15455 YfgM family protein low > 74
Rahnella sp. WP5 0.47 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.19 EX31_RS20500 YfgM family protein low > 89
Dickeya dianthicola ME23 0.46 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.21 DZA65_RS16640 YfgM family protein low > 75
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_06950 ATP-dependent RNA helicase HrpA 0.22 CSW01_03950 hypothetical protein low > 62
Dickeya dianthicola 67-19 0.46 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.21 HGI48_RS15565 YfgM family protein low > 71
Escherichia coli Nissle 1917 0.46 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.19 ECOLIN_RS14280 ancillary SecYEG translocon subunit YfgM — —
Escherichia fergusonii Becca 0.46 EFB2_02565 hypothetical protein 0.19 EFB2_01377 hypothetical protein low > 86
Pantoea sp. MT58 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA 0.20 IAI47_05065 YfgM family protein low > 76
Escherichia coli BL21 0.46 ECD_01368 putative ATP-dependent helicase 0.19 ECD_02405 ancillary SecYEG translocon subunit; putative anti-RcsB factor 0.36 40
Enterobacter asburiae PDN3 0.46 EX28DRAFT_1357 RNA helicase HrpA 0.21 EX28DRAFT_0131 Uncharacterized protein conserved in bacteria low > 76
Escherichia coli ECRC101 0.46 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.19 MCAODC_12265 yfgM ancillary SecYEG translocon subunit YfgM low > 87
Escherichia coli ECRC99 0.46 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.19 KEDOAH_06485 yfgM ancillary SecYEG translocon subunit YfgM — —
Klebsiella michiganensis M5al 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.18 BWI76_RS21075 membrane protein low > 92
Escherichia coli ECRC100 0.46 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.19 OKFHMN_21735 yfgM ancillary SecYEG translocon subunit YfgM low > 80
Escherichia coli ECRC98 0.46 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.19 JDDGAC_25410 yfgM ancillary SecYEG translocon subunit YfgM low > 86
Escherichia coli ECRC62 0.46 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.19 BNILDI_12185 yfgM ancillary SecYEG translocon subunit YfgM — —
Escherichia coli ECRC102 0.46 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.19 NIAGMN_19505 yfgM ancillary SecYEG translocon subunit YfgM — —
Enterobacter sp. TBS_079 0.46 MPMX20_02189 hypothetical protein 0.20 MPMX20_03391 hypothetical protein low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_02301 hypothetical protein 0.19 OHPLBJKB_01196 hypothetical protein low > 73
Escherichia coli ECOR27 0.46 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.19 NOLOHH_13385 yfgM ancillary SecYEG translocon subunit YfgM low > 75
Escherichia coli ECOR38 0.46 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.18 HEPCGN_20855 yfgM ancillary SecYEG translocon subunit YfgM low > 87
Escherichia coli BW25113 0.46 b1413 hrpA ATP-dependent helicase (RefSeq) 0.19 b2513 yfgM hypothetical protein (NCBI) low > 76
Alteromonas macleodii MIT1002 0.45 MIT1002_01685 ATP-dependent RNA helicase HrpB 0.25 MIT1002_02786 tol-pal system protein YbgF low > 70
Erwinia tracheiphila SCR3 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.20 LU632_RS17790 YfgM family protein 0.51 46
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11020 ATP-dependent RNA helicase HrpA 0.22 ABZR87_RS10925 tetratricopeptide repeat protein low > 80
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS13030 ATP-dependent helicase 0.24 RR42_RS13130 membrane protein low > 128
Ralstonia solanacearum GMI1000 0.41 RS_RS06270 ATP-dependent RNA helicase HrpA 0.22 RS_RS06095 membrane protein — —
Ralstonia solanacearum UW163 0.41 UW163_RS12950 ATP-dependent RNA helicase HrpA 0.20 UW163_RS12750 membrane protein — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS15490 ATP-dependent RNA helicase HrpA 0.20 RALBFv3_RS15285 membrane protein — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17865 ATP-dependent RNA helicase HrpA 0.22 RPSI07_RS18090 membrane protein low > 81
Dechlorosoma suillum PS 0.41 Dsui_1373 ATP-dependent helicase HrpA 0.23 Dsui_3140 hypothetical protein — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS12980 ATP-dependent helicase 0.20 BPHYT_RS12570 membrane protein — —
Variovorax sp. OAS795 0.39 ABID97_RS16615 ATP-dependent RNA helicase HrpA 0.20 ABID97_RS14235 tetratricopeptide repeat protein — —
Paraburkholderia graminis OAS925 0.39 ABIE53_002813 ATP-dependent helicase HrpA 0.18 ABIE53_002740 putative negative regulator of RcsB-dependent stress response low > 113
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_00445 ATP-dependent helicase HrpA 0.20 H281DRAFT_00518 Putative negative regulator of RcsB-dependent stress response low > 103
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS17315 ATP-dependent helicase 0.24 HSERO_RS14790 membrane protein low > 78
Castellaniella sp019104865 MT123 0.39 ABCV34_RS02420 ATP-dependent RNA helicase HrpA 0.23 ABCV34_RS02630 tetratricopeptide repeat protein — —
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_1779 ATP-dependent helicase HrpA 0.19 B158DRAFT_1154 Uncharacterized protein conserved in bacteria low > 40
Acidovorax sp. GW101-3H11 0.38 Ac3H11_896 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.18 Ac3H11_1796 Mlr7403 protein — —
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS19720 ATP-dependent RNA helicase HrpA 0.25 ABZR86_RS05440 tetratricopeptide repeat protein low > 74
Variovorax sp. SCN45 0.38 GFF247 ATP-dependent helicase HrpA 0.21 GFF997 UPF0070 protein YfgM low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF4301 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.22 GFF4861 Mlr7403 protein low > 90
Lysobacter sp. OAE881 0.37 ABIE51_RS05155 ATP-dependent RNA helicase HrpA 0.14 ABIE51_RS09430 tetratricopeptide repeat protein low > 62
Acinetobacter radioresistens SK82 0.37 MPMX26_02008 hypothetical protein 0.19 MPMX26_00431 hypothetical protein low > 36
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS05625 ATP-dependent RNA helicase HrpA 0.21 QEN71_RS05985 tetratricopeptide repeat protein 0.64 88

Not shown: 1 genomes with orthologs for Psyr_3831 only; 4 genomes with orthologs for Psyr_1250 only