Conservation of cofitness between Psyr_1419 and Psyr_0188 in Pseudomonas syringae pv. syringae B728a

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1419 preQ(0) biosynthesis protein QueC 1.0 Psyr_0188 Protein of unknown function UPF0047 0.40 12
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1419 preQ(0) biosynthesis protein QueC 1.00 Psyr_0188 Protein of unknown function UPF0047 low > 86
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_18070 7-cyano-7-deazaguanine synthase 0.85 AO356_12710 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_5546 Queuosine Biosynthesis QueC ATPase 0.84 Pf6N2E2_4413 FIG004064: hypothetical protein low > 103
Pseudomonas fluorescens SBW25 0.90 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.85 PFLU_RS29295 YjbQ family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.85 PFLU_RS29295 YjbQ family protein low > 109
Pseudomonas sp. RS175 0.89 PFR28_03403 7-cyano-7-deazaguanine synthase 0.84 PFR28_04381 hypothetical protein low > 88
Pseudomonas simiae WCS417 0.89 PS417_22400 7-cyano-7-deazaguanine synthase 0.84 PS417_27610 hypothetical protein 0.24 88
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_03535 7-cyano-7-deazaguanine synthase 0.84 AO353_09065 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_628 Queuosine Biosynthesis QueC ATPase 0.85 Pf1N1B4_2168 FIG004064: hypothetical protein low > 87
Pseudomonas sp. DMC3 0.86 GFF5175 7-cyano-7-deazaguanine synthase 0.86 GFF373 hypothetical protein low > 89
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase 0.85 PfGW456L13_839 FIG004064: hypothetical protein low > 87
Pseudomonas aeruginosa MRSN321 0.85 DY961_RS07550 queC;go_process=queuosine 7-cyano-7-deazaguanine synthase QueC 0.78 DY961_RS12320 secondary thiamine-phosphate synthase enzyme YjbQ low > 100
Pseudomonas aeruginosa PUPa3 0.85 DQ20_RS45240 queC;go_process=queuosine 7-cyano-7-deazaguanine synthase QueC 0.78 DQ20_RS49810 secondary thiamine-phosphate synthase enzyme YjbQ low > 101
Pseudomonas aeruginosa PA14 0.85 IKLFDK_04420 7-cyano-7-deazaguanine synthase QueC 0.78 IKLFDK_27020 Uncharacterised protein family UPF0047 low > 98
Pseudomonas stutzeri RCH2 0.84 Psest_1506 queuosine biosynthesis protein QueC 0.82 Psest_3770 secondary thiamine-phosphate synthase enzyme low > 67
Pseudomonas sp. S08-1 0.82 OH686_19180 queuosine biosynthesis protein QueC 0.80 OH686_13770 UPF0047 protein YjbQ low > 80
Methylophilus sp. DMC18 0.69 GFF2336 7-cyano-7-deazaguanine synthase 0.41 GFF1790 hypothetical protein low > 43
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1146 preQ(0) biosynthesis protein QueC 0.38 B158DRAFT_2014 secondary thiamine-phosphate synthase enzyme low > 40
Dechlorosoma suillum PS 0.67 Dsui_0549 queuosine biosynthesis protein QueC 0.43 Dsui_0738 secondary thiamine-phosphate synthase enzyme low > 51
Rhodanobacter sp000427505 FW510-R12 0.65 LRK53_RS05175 7-cyano-7-deazaguanine synthase QueC 0.40 LRK53_RS05655 secondary thiamine-phosphate synthase enzyme YjbQ low > 59
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_01895 queC 7-cyano-7-deazaguanine synthase QueC 0.41 OKGIIK_11150 yjbQ secondary thiamine-phosphate synthase low > 53
Rhodanobacter denitrificans MT42 0.64 LRK55_RS04635 7-cyano-7-deazaguanine synthase QueC 0.40 LRK55_RS04050 secondary thiamine-phosphate synthase enzyme YjbQ low > 63
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS04855 7-cyano-7-deazaguanine synthase QueC 0.40 LRK54_RS04275 secondary thiamine-phosphate synthase enzyme YjbQ low > 59
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS10785 7-cyano-7-deazaguanine synthase QueC 0.44 ABZR86_RS10440 secondary thiamine-phosphate synthase enzyme YjbQ low > 74
Azospirillum brasilense Sp245 0.55 AZOBR_RS04150 7-cyano-7-deazaguanine synthase 0.43 AZOBR_RS06035 hypothetical protein low > 97
Synechocystis sp000284455 PCC 6803 0.47 SGL_RS16620 7-cyano-7-deazaguanine synthase QueC 0.37 SGL_RS10345 secondary thiamine-phosphate synthase enzyme YjbQ low > 52
Synechococcus elongatus PCC 7942 0.42 Synpcc7942_1333 ExsB 0.36 Synpcc7942_0078 hypothetical protein low > 38
Marinobacter adhaerens HP15 0.32 HP15_3814 ExsB protein 0.64 HP15_721 protein belonging to uncharacterized protein family UPF0047 low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF4360 Queuosine Biosynthesis QueC ATPase 0.55 GFF1425 FIG004064: hypothetical protein low > 78
Klebsiella michiganensis M5al 0.31 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC 0.58 BWI76_RS01935 thiamin phosphate synthase low > 92
Klebsiella pneumoniae MKP103 0.31 KDGMDA_14645 7-cyano-7-deazaguanine synthase QueC 0.60 KDGMDA_10390 Thiamin phosphate synthase low > 95
Enterobacter sp. TBS_079 0.31 MPMX20_01035 7-cyano-7-deazaguanine synthase 0.61 MPMX20_00274 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.31 EX28DRAFT_2526 queuosine biosynthesis protein QueC 0.61 EX28DRAFT_4248 secondary thiamine-phosphate synthase enzyme low > 76
Escherichia coli Nissle 1917 0.30 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC 0.60 ECOLIN_RS23475 secondary thiamine-phosphate synthase enzyme YjbQ low > 55
Dickeya dadantii 3937 0.30 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC 0.56 DDA3937_RS17595 YjbQ family protein low > 74
Phaeobacter inhibens DSM 17395 0.30 PGA1_c05600 queuosine biosynthesis protein QueC 0.41 PGA1_c08850 secondary thiamine-phosphate synthase enzyme low > 62
Escherichia coli BW25113 0.30 b0444 ybaX predicted aluminum resistance protein (NCBI) 0.61 b4056 yjbQ hypothetical protein (NCBI) low > 76
Escherichia coli ECRC62 0.30 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC 0.60 BNILDI_06370 yjbQ UPF0047 protein YjbQ low > 75
Escherichia coli ECOR27 0.30 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC 0.61 NOLOHH_05155 yjbQ UPF0047 protein YjbQ low > 76
Escherichia fergusonii Becca 0.30 EFB2_03613 7-cyano-7-deazaguanine synthase 0.60 EFB2_04535 hypothetical protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase 0.61 OHPLBJKB_03985 hypothetical protein low > 74
Escherichia coli ECOR38 0.30 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC 0.61 HEPCGN_11520 yjbQ UPF0047 protein YjbQ low > 88
Escherichia coli ECRC101 0.30 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC 0.61 MCAODC_03415 yjbQ UPF0047 protein YjbQ low > 87
Escherichia coli ECRC99 0.30 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC 0.61 KEDOAH_15245 yjbQ UPF0047 protein YjbQ — —
Escherichia coli ECRC100 0.30 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC 0.61 OKFHMN_12905 yjbQ UPF0047 protein YjbQ low > 79
Escherichia coli ECRC102 0.30 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC 0.61 NIAGMN_10750 yjbQ UPF0047 protein YjbQ low > 80
Escherichia coli ECRC98 0.30 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC 0.61 JDDGAC_16540 yjbQ UPF0047 protein YjbQ low > 87
Pectobacterium carotovorum WPP14 0.30 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC 0.62 HER17_RS03555 secondary thiamine-phosphate synthase enzyme YjbQ low > 75
Escherichia coli BL21 0.30 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis 0.61 ECD_03928 thiamine phosphate synthase low > 61
Pseudomonas lactucae CFBP13502 0.30 GEMAOFIL_04820 7-cyano-7-deazaguanine synthase 0.84 GEMAOFIL_05660 hypothetical protein low > 96
Pseudomonas orientalis W4I3 0.30 QF045_RS25625 7-cyano-7-deazaguanine synthase QueC 0.85 QF045_RS01975 secondary thiamine-phosphate synthase enzyme YjbQ low > 93
Sinorhizobium meliloti 1021 0.30 SM_b20940 hypothetical protein 0.39 SMc01559 hypothetical protein low > 103
Pantoea agglomerans CFBP13505 P0401 0.29 PagCFBP13505_RS10575 7-cyano-7-deazaguanine synthase QueC 0.64 PagCFBP13505_RS21155 YjbQ family protein low > 74
Phocaeicola vulgatus CL09T03C04 0.29 HMPREF1058_RS15270 7-cyano-7-deazaguanine synthase QueC 0.54 HMPREF1058_RS05960 YjbQ family protein low > 67
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS11300 7-cyano-7-deazaguanine synthase QueC 0.54 ABI39_RS18130 secondary thiamine-phosphate synthase enzyme YjbQ low > 72
Erwinia amylovora T8 0.29 OLJFJH_17935 7-cyano-7-deazaguanine synthase QueC 0.59 OLJFJH_03445 Uncharacterised protein family UPF0047 low > 58
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_06875 7-cyano-7-deazaguanine synthase QueC 0.66 CSW01_01960 hypothetical protein low > 62
Pantoea sp. MT58 0.29 IAI47_14620 7-cyano-7-deazaguanine synthase QueC 0.64 IAI47_17830 YjbQ family protein low > 76
Shewanella amazonensis SB2B 0.29 Sama_1826 ExsB protein (RefSeq) 0.66 Sama_1665 hypothetical protein (RefSeq) low > 62
Serratia liquefaciens MT49 0.28 IAI46_05045 7-cyano-7-deazaguanine synthase QueC 0.53 IAI46_22925 YjbQ family protein low > 87
Bacteroides ovatus ATCC 8483 0.28 BACOVA_04309 protein ExsB 0.48 BACOVA_02253 secondary thiamine-phosphate synthase enzyme low > 96
Agrobacterium fabrum C58 0.28 Atu3346 succinoglycan biosynthesis regulator 0.37 Atu2164 hypothetical protein low > 89
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS11150 7-cyano-7-deazaguanine synthase QueC 0.49 HMPREF1181_RS13780 YjbQ family protein low > 56
Shewanella loihica PV-4 0.27 Shew_2062 exsB protein (RefSeq) 0.59 Shew_1893 hypothetical protein (RefSeq) — —
Bosea sp. OAE506 0.26 ABIE41_RS11340 7-cyano-7-deazaguanine synthase QueC 0.40 ABIE41_RS12025 secondary thiamine-phosphate synthase enzyme YjbQ low > 77
Desulfovibrio vulgaris Miyazaki F 0.23 DvMF_1125 exsB protein (RefSeq) 0.25 DvMF_2505 protein of unknown function UPF0047 (RefSeq) low > 51
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS00200 7-cyano-7-deazaguanine synthase QueC 0.44 QEN71_RS15455 secondary thiamine-phosphate synthase enzyme YjbQ low > 153
Burkholderia phytofirmans PsJN 0.23 BPHYT_RS01500 7-cyano-7-deazaguanine synthase 0.44 BPHYT_RS26250 hypothetical protein low > 109
Paraburkholderia graminis OAS925 0.23 ABIE53_000396 7-cyano-7-deazaguanine synthase 0.43 ABIE53_005988 secondary thiamine-phosphate synthase enzyme low > 113
Paraburkholderia bryophila 376MFSha3.1 0.22 H281DRAFT_02232 preQ(0) biosynthesis protein QueC 0.42 H281DRAFT_02804 secondary thiamine-phosphate synthase enzyme low > 103
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU2659 exsB protein (TIGR) 0.26 DVU0499 conserved hypothetical protein TIGR00149 (TIGR) low > 55

Not shown: 41 genomes with orthologs for Psyr_1419 only; 6 genomes with orthologs for Psyr_0188 only