Conservation of cofitness between Psyr_0090 and Psyr_0091 in Pseudomonas syringae pv. syringae B728a

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 1.0 Psyr_0091 succinate semialdehyde dehydrogenase 0.63 1
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 1.00 Psyr_0091 succinate semialdehyde dehydrogenase low > 86
Pseudomonas lactucae CFBP13502 0.91 GEMAOFIL_00404 5-aminovalerate aminotransferase DavT 0.91 GEMAOFIL_00403 Glutarate-semialdehyde dehydrogenase low > 96
Pseudomonas segetis P6 0.91 MPMX49_00505 5-aminovalerate aminotransferase DavT 0.90 MPMX49_00504 Glutarate-semialdehyde dehydrogenase 0.61 70
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.91 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase 0.66 1
Pseudomonas fluorescens SBW25 0.90 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.91 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.90 AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) 0.59 3
Pseudomonas simiae WCS417 0.90 PS417_00900 4-aminobutyrate aminotransferase 0.91 PS417_00895 succinate-semialdehyde dehydrogenase 0.22 15
Pseudomonas orientalis W4I3 0.90 QF045_RS03960 4-aminobutyrate--2-oxoglutarate transaminase 0.90 QF045_RS03955 NADP-dependent succinate-semialdehyde dehydrogenase low > 93
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.91 Pf1N1B4_1734 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.73 1
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.90 PfGW456L13_495 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (from data) 0.85 1
Pseudomonas sp. RS175 0.90 PFR28_04756 5-aminovalerate aminotransferase DavT 0.91 PFR28_04755 Glutarate-semialdehyde dehydrogenase 0.89 1
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.91 Pf6N2E2_4014 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.62 1
Pseudomonas sp. DMC3 0.90 GFF4255 5-aminovalerate aminotransferase DavT 0.92 GFF4256 Glutarate-semialdehyde dehydrogenase low > 89
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_10715 4-aminobutyrate aminotransferase 0.91 AO356_10720 succinate-semialdehyde dehydrogenase 0.77 3
Pseudomonas sp. BP01 0.88 JOY50_RS18510 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.90 JOY50_RS18515 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 84
Pseudomonas putida KT2440 0.87 PP_0214 4-aminobutyrate aminotransferase 0.90 PP_0213 succinate-semialdehyde dehydrogenase (NADP+) 0.67 1
Pseudomonas sp. SVBP6 0.87 COO64_RS12480 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.91 COO64_RS12475 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 93
Pseudomonas stutzeri RCH2 0.86 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type 0.83 Psest_4237 succinate-semialdehyde dehydrogenase low > 67
Pseudomonas aeruginosa MRSN321 0.82 DY961_RS21270 gabT;go_function=4-aminobutyrate 4-aminobutyrate--2-oxoglutarate transaminase 0.88 DY961_RS21260 gabD;go_function=succinate-semialdehyde NADP-dependent succinate-semialdehyde dehydrogenase 0.59 13
Pseudomonas aeruginosa PUPa3 0.82 DQ20_RS38015 gabT;go_function=4-aminobutyrate 4-aminobutyrate--2-oxoglutarate transaminase 0.88 DQ20_RS38020 gabD;go_function=succinate-semialdehyde NADP-dependent succinate-semialdehyde dehydrogenase 0.64 1
Pseudomonas aeruginosa PA14 0.81 IKLFDK_24130 4-aminobutyrate--2-oxoglutarate transaminase 0.88 IKLFDK_24135 NADP-dependent succinate-semialdehyde dehydrogenase 0.48 9
Pseudomonas sp. S08-1 0.79 OH686_11880 4-aminobutyrate transaminase 0.87 OH686_11875 Succinate-semialdehyde dehydrogenase [NAD(P)+] — —
Escherichia coli ECOR38 0.77 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.82 HEPCGN_20150 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 88
Escherichia coli ECRC99 0.76 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.82 KEDOAH_07225 gabD NADP-dependent succinate-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.76 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.82 JDDGAC_24575 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC101 0.76 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.82 MCAODC_11435 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC100 0.76 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.82 OKFHMN_20915 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 79
Escherichia coli ECRC102 0.76 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.82 NIAGMN_18680 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 80
Klebsiella pneumoniae MKP103 0.76 KDGMDA_13830 4-aminobutyrate--2-oxoglutarate transaminase 0.81 KDGMDA_13835 NADP-dependent succinate-semialdehyde dehydrogenase low > 95
Escherichia fergusonii Becca 0.76 EFB2_01268 4-aminobutyrate aminotransferase GabT 0.80 EFB2_01269 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 86
Escherichia coli BW25113 0.76 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) 0.82 b2661 gabD succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI) low > 76
Escherichia coli BL21 0.76 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent 0.82 ECD_02517 succinate-semialdehyde dehydrogenase I, NADP-dependent low > 61
Escherichia coli Nissle 1917 0.76 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase 0.80 ECOLIN_RS14840 NADP-dependent succinate-semialdehyde dehydrogenase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT 0.82 OHPLBJKB_01071 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 74
Escherichia coli ECRC62 0.76 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.82 BNILDI_11300 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 75
Escherichia coli ECOR27 0.76 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.82 NOLOHH_12740 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.82 GFF1566 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.37 38
Shewanella amazonensis SB2B 0.70 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) 0.71 Sama_2637 succinate-semialdehyde dehydrogenase (NAD(P)(+)) (RefSeq) 0.52 16
Shewanella sp. ANA-3 0.68 Shewana3_3091 4-aminobutyrate aminotransferase (RefSeq) 0.73 Shewana3_3092 succinate semialdehyde dehydrogenase (RefSeq) low > 73
Variovorax sp. OAS795 0.67 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase 0.67 ABID97_RS11235 NAD-dependent succinate-semialdehyde dehydrogenase low > 91
Shewanella oneidensis MR-1 0.67 SO1276 gabT 4-aminobutyrate aminotransferase (NCBI ptt file) 0.73 SO1275 gabD succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] (from data) 0.64 1
Acidovorax sp. GW101-3H11 0.66 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.68 Ac3H11_1480 Aldehyde dehydrogenase B (EC 1.2.1.22) low > 79
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS21370 4-aminobutyrate aminotransferase 0.73 RR42_RS21760 succinate-semialdehyde dehydrogenase low > 128
Azospirillum brasilense Sp245 0.57 AZOBR_RS19630 4-aminobutyrate aminotransferase 0.72 AZOBR_RS09720 succinate-semialdehyde dehdyrogenase low > 97
Azospirillum sp. SherDot2 0.56 MPMX19_04919 5-aminovalerate aminotransferase DavT 0.64 MPMX19_04920 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 112
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS05420 4-aminobutyrate aminotransferase 0.74 HSERO_RS05395 succinate-semialdehyde dehdyrogenase 0.31 64
Pectobacterium carotovorum WPP14 0.55 HER17_RS09880 4-aminobutyrate--2-oxoglutarate transaminase 0.65 HER17_RS09885 NAD-dependent succinate-semialdehyde dehydrogenase low > 75
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS19980 4-aminobutyrate--2-oxoglutarate transaminase 0.71 QEN71_RS11690 NADP-dependent succinate-semialdehyde dehydrogenase low > 153
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS05190 4-aminobutyrate--2-oxoglutarate transaminase 0.66 ABZR87_RS08845 NAD-dependent succinate-semialdehyde dehydrogenase low > 80
Acinetobacter radioresistens SK82 0.54 MPMX26_01998 4-aminobutyrate aminotransferase PuuE 0.65 MPMX26_01991 Glutarate-semialdehyde dehydrogenase low > 36
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_03179 4-aminobutyrate aminotransferase apoenzyme 0.68 H281DRAFT_02680 succinate semialdehyde dehydrogenase low > 103
Ralstonia solanacearum PSI07 0.54 RPSI07_RS23805 4-aminobutyrate--2-oxoglutarate transaminase 0.66 RPSI07_RS20435 NAD-dependent succinate-semialdehyde dehydrogenase low > 81
Variovorax sp. SCN45 0.54 GFF921 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.68 GFF5612 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 127
Ralstonia solanacearum GMI1000 0.53 RS_RS00145 4-aminobutyrate--2-oxoglutarate transaminase 0.64 RS_RS00140 NAD-dependent succinate-semialdehyde dehydrogenase low > 80
Enterobacter asburiae PDN3 0.53 EX28DRAFT_4294 4-aminobutyrate aminotransferase, prokaryotic type 0.57 EX28DRAFT_3290 succinate-semialdehyde dehydrogenase low > 76
Enterobacter sp. TBS_079 0.53 MPMX20_04337 4-aminobutyrate aminotransferase PuuE 0.55 MPMX20_04145 Glutarate-semialdehyde dehydrogenase low > 85
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS22435 4-aminobutyrate aminotransferase 0.67 BPHYT_RS22430 succinate-semialdehyde dehydrogenase low > 109
Sinorhizobium meliloti 1021 0.53 SM_b21186 4-aminobutyrate aminotransferase 0.74 SMc02780 succinate-semialdehyde dehydrogenase [NADP+] protein low > 103
Serratia liquefaciens MT49 0.53 IAI46_22165 4-aminobutyrate--2-oxoglutarate transaminase 0.68 IAI46_16465 NADP-dependent succinate-semialdehyde dehydrogenase low > 87
Paraburkholderia graminis OAS925 0.53 ABIE53_004117 4-aminobutyrate aminotransferase 0.66 ABIE53_005621 succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase low > 113
Dickeya dianthicola ME23 0.53 DZA65_RS12405 4-aminobutyrate--2-oxoglutarate transaminase 0.66 DZA65_RS12400 NAD-dependent succinate-semialdehyde dehydrogenase 0.27 75
Klebsiella michiganensis M5al 0.53 BWI76_RS26375 aspartate aminotransferase family protein 0.82 BWI76_RS05620 NAD-dependent succinate-semialdehyde dehydrogenase low > 92
Dickeya dianthicola 67-19 0.52 HGI48_RS11860 4-aminobutyrate--2-oxoglutarate transaminase 0.65 HGI48_RS11855 NAD-dependent succinate-semialdehyde dehydrogenase 0.56 31
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF2029 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.62 GFF1556 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) low > 90
Ralstonia solanacearum UW163 0.52 UW163_RS04035 4-aminobutyrate--2-oxoglutarate transaminase 0.66 UW163_RS04040 NAD-dependent succinate-semialdehyde dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS09545 4-aminobutyrate--2-oxoglutarate transaminase 0.66 RALBFv3_RS09540 NAD-dependent succinate-semialdehyde dehydrogenase 0.35 13
Rhizobium sp. OAE497 0.52 ABIE40_RS00145 4-aminobutyrate--2-oxoglutarate transaminase 0.64 ABIE40_RS00140 NAD-dependent succinate-semialdehyde dehydrogenase low > 107
Shewanella loihica PV-4 0.52 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) 0.58 Shew_3173 succinic semialdehyde dehydrogenase (RefSeq) 0.75 8
Castellaniella sp019104865 MT123 0.51 ABCV34_RS01765 4-aminobutyrate--2-oxoglutarate transaminase 0.72 ABCV34_RS09380 NADP-dependent succinate-semialdehyde dehydrogenase low > 48
Acinetobacter baumannii LAC-4 0.51 RR41_RS01110 4-aminobutyrate--2-oxoglutarate transaminase 0.65 RR41_RS15005 NAD-dependent succinate-semialdehyde dehydrogenase low > 55
Rhodopseudomonas palustris CGA009 0.51 TX73_012015 4-aminobutyrate--2-oxoglutarate transaminase 0.61 TX73_002390 NAD-dependent succinate-semialdehyde dehydrogenase low > 86
Rahnella sp. WP5 0.51 EX31_RS00095 4-aminobutyrate--2-oxoglutarate transaminase 0.56 EX31_RS12300 NAD-dependent succinate-semialdehyde dehydrogenase low > 89
Marinobacter adhaerens HP15 0.50 HP15_3708 4-aminobutyrate aminotransferase 0.65 HP15_2020 succinate-semialdehyde dehydrogenase I low > 73

Not shown: 5 genomes with orthologs for Psyr_0090 only; 21 genomes with orthologs for Psyr_0091 only