Conservation of cofitness between Pf6N2E2_4014 and Pf6N2E2_4013 in Pseudomonas fluorescens FW300-N2E2

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_4014 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 1.0 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.62 2
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_10720 succinate-semialdehyde dehydrogenase 0.99 AO356_10715 4-aminobutyrate aminotransferase 0.77 2
Pseudomonas sp. RS175 0.99 PFR28_04755 Glutarate-semialdehyde dehydrogenase 0.99 PFR28_04756 5-aminovalerate aminotransferase DavT 0.89 1
Pseudomonas lactucae CFBP13502 0.98 GEMAOFIL_00403 Glutarate-semialdehyde dehydrogenase 0.94 GEMAOFIL_00404 5-aminovalerate aminotransferase DavT low > 93
Pseudomonas simiae WCS417 0.98 PS417_00895 succinate-semialdehyde dehydrogenase 0.94 PS417_00900 4-aminobutyrate aminotransferase 0.22 3
Pseudomonas fluorescens SBW25 0.97 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase 0.94 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase low > 109
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase 0.94 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.66 1
Pseudomonas sp. DMC3 0.97 GFF4256 Glutarate-semialdehyde dehydrogenase 0.96 GFF4255 5-aminovalerate aminotransferase DavT low > 89
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) 0.95 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.59 3
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_1734 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.95 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.73 1
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_495 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (from data) 0.96 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.85 1
Pseudomonas sp. SVBP6 0.93 COO64_RS12475 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.92 COO64_RS12480 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 93
Pseudomonas segetis P6 0.93 MPMX49_00504 Glutarate-semialdehyde dehydrogenase 0.90 MPMX49_00505 5-aminovalerate aminotransferase DavT 0.61 66
Pseudomonas sp. BP01 0.93 JOY50_RS18515 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.88 JOY50_RS18510 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 84
Pseudomonas putida KT2440 0.93 PP_0213 succinate-semialdehyde dehydrogenase (NADP+) 0.88 PP_0214 4-aminobutyrate aminotransferase 0.67 1
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0091 succinate semialdehyde dehydrogenase 0.88 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.63 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0091 succinate semialdehyde dehydrogenase 0.88 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Pseudomonas aeruginosa PA14 0.90 IKLFDK_24135 NADP-dependent succinate-semialdehyde dehydrogenase 0.82 IKLFDK_24130 4-aminobutyrate--2-oxoglutarate transaminase 0.50 100
Pseudomonas sp. S08-1 0.89 OH686_11875 Succinate-semialdehyde dehydrogenase [NAD(P)+] 0.80 OH686_11880 4-aminobutyrate transaminase — —
Pseudomonas stutzeri RCH2 0.86 Psest_4237 succinate-semialdehyde dehydrogenase 0.86 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type low > 67
Escherichia coli ECOR38 0.84 HEPCGN_20150 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.76 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 88
Escherichia coli ECRC98 0.84 JDDGAC_24575 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.76 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 87
Escherichia coli ECRC102 0.84 NIAGMN_18680 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.76 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 80
Escherichia coli ECRC100 0.84 OKFHMN_20915 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.76 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 79
Escherichia coli ECRC101 0.84 MCAODC_11435 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.76 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 88
Escherichia coli ECRC99 0.84 KEDOAH_07225 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.76 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.84 OHPLBJKB_01071 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD 0.76 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT low > 74
Escherichia coli BW25113 0.84 b2661 gabD succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI) 0.76 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) low > 76
Escherichia coli BL21 0.84 ECD_02517 succinate-semialdehyde dehydrogenase I, NADP-dependent 0.76 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent low > 61
Escherichia coli ECRC62 0.84 BNILDI_11300 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.76 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Escherichia coli ECOR27 0.84 NOLOHH_12740 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.76 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 76
Klebsiella michiganensis M5al 0.83 BWI76_RS05620 NAD-dependent succinate-semialdehyde dehydrogenase 0.55 BWI76_RS26375 aspartate aminotransferase family protein low > 92
Klebsiella pneumoniae MKP103 0.83 KDGMDA_13835 NADP-dependent succinate-semialdehyde dehydrogenase 0.77 KDGMDA_13830 4-aminobutyrate--2-oxoglutarate transaminase low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF1566 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.75 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 78
Escherichia fergusonii Becca 0.82 EFB2_01269 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD 0.76 EFB2_01268 4-aminobutyrate aminotransferase GabT low > 86
Escherichia coli Nissle 1917 0.81 ECOLIN_RS14840 NADP-dependent succinate-semialdehyde dehydrogenase 0.76 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase low > 55
Cupriavidus basilensis FW507-4G11 0.75 RR42_RS21760 succinate-semialdehyde dehydrogenase 0.59 RR42_RS26240 4-aminobutyrate aminotransferase low > 128
Sinorhizobium meliloti 1021 0.74 SMc02780 succinate-semialdehyde dehydrogenase [NADP+] protein 0.53 SM_b21186 4-aminobutyrate aminotransferase low > 103
Azospirillum brasilense Sp245 0.73 AZOBR_RS09720 succinate-semialdehyde dehdyrogenase 0.58 AZOBR_RS19630 4-aminobutyrate aminotransferase low > 97
Herbaspirillum seropedicae SmR1 0.73 HSERO_RS05395 succinate-semialdehyde dehdyrogenase 0.57 HSERO_RS05420 4-aminobutyrate aminotransferase low > 78
Shewanella oneidensis MR-1 0.72 SO1275 gabD succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] (from data) 0.67 SO1276 gabT 4-aminobutyrate aminotransferase (NCBI ptt file) 0.64 1
Shewanella sp. ANA-3 0.71 Shewana3_3092 succinate semialdehyde dehydrogenase (RefSeq) 0.68 Shewana3_3091 4-aminobutyrate aminotransferase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.71 Sama_2637 succinate-semialdehyde dehydrogenase (NAD(P)(+)) (RefSeq) 0.69 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) low > 62
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS12060 NAD-dependent succinate-semialdehyde dehydrogenase 0.56 QEN71_RS19980 4-aminobutyrate--2-oxoglutarate transaminase low > 153
Castellaniella sp019104865 MT123 0.70 ABCV34_RS09380 NADP-dependent succinate-semialdehyde dehydrogenase 0.52 ABCV34_RS01765 4-aminobutyrate--2-oxoglutarate transaminase low > 48
Serratia liquefaciens MT49 0.69 IAI46_16465 NADP-dependent succinate-semialdehyde dehydrogenase 0.55 IAI46_22165 4-aminobutyrate--2-oxoglutarate transaminase low > 86
Ralstonia solanacearum PSI07 0.68 RPSI07_RS20435 NAD-dependent succinate-semialdehyde dehydrogenase 0.55 RPSI07_RS23805 4-aminobutyrate--2-oxoglutarate transaminase low > 81
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS09540 NAD-dependent succinate-semialdehyde dehydrogenase 0.53 RALBFv3_RS09545 4-aminobutyrate--2-oxoglutarate transaminase 0.35 13
Ralstonia solanacearum UW163 0.68 UW163_RS04040 NAD-dependent succinate-semialdehyde dehydrogenase 0.53 UW163_RS04035 4-aminobutyrate--2-oxoglutarate transaminase — —
Variovorax sp. SCN45 0.68 GFF5612 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.55 GFF921 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 127
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_02680 succinate semialdehyde dehydrogenase 0.56 H281DRAFT_03179 4-aminobutyrate aminotransferase apoenzyme low > 103
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS08845 NAD-dependent succinate-semialdehyde dehydrogenase 0.56 ABZR87_RS05190 4-aminobutyrate--2-oxoglutarate transaminase low > 80
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS22430 succinate-semialdehyde dehydrogenase 0.55 BPHYT_RS22435 4-aminobutyrate aminotransferase low > 109
Paraburkholderia graminis OAS925 0.66 ABIE53_005621 succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase 0.55 ABIE53_004117 4-aminobutyrate aminotransferase low > 113
Acidovorax sp. GW101-3H11 0.66 Ac3H11_1480 Aldehyde dehydrogenase B (EC 1.2.1.22) 0.66 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 79
Variovorax sp. OAS795 0.66 ABID97_RS11235 NAD-dependent succinate-semialdehyde dehydrogenase 0.69 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase low > 91
Pectobacterium carotovorum WPP14 0.66 HER17_RS09885 NAD-dependent succinate-semialdehyde dehydrogenase 0.56 HER17_RS09880 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Dickeya dianthicola ME23 0.66 DZA65_RS12400 NAD-dependent succinate-semialdehyde dehydrogenase 0.54 DZA65_RS12405 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Ralstonia solanacearum GMI1000 0.66 RS_RS00140 NAD-dependent succinate-semialdehyde dehydrogenase 0.54 RS_RS00145 4-aminobutyrate--2-oxoglutarate transaminase 0.49 27
Acinetobacter radioresistens SK82 0.65 MPMX26_01991 Glutarate-semialdehyde dehydrogenase 0.56 MPMX26_01998 4-aminobutyrate aminotransferase PuuE low > 36
Dickeya dianthicola 67-19 0.65 HGI48_RS11855 NAD-dependent succinate-semialdehyde dehydrogenase 0.53 HGI48_RS11860 4-aminobutyrate--2-oxoglutarate transaminase 0.56 16
Azospirillum sp. SherDot2 0.65 MPMX19_04920 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD 0.57 MPMX19_04919 5-aminovalerate aminotransferase DavT low > 112
Acinetobacter baumannii LAC-4 0.65 RR41_RS15005 NAD-dependent succinate-semialdehyde dehydrogenase 0.53 RR41_RS01110 4-aminobutyrate--2-oxoglutarate transaminase low > 55
Rhizobium sp. OAE497 0.64 ABIE40_RS00140 NAD-dependent succinate-semialdehyde dehydrogenase 0.52 ABIE40_RS00145 4-aminobutyrate--2-oxoglutarate transaminase low > 107
Marinobacter adhaerens HP15 0.64 HP15_2020 succinate-semialdehyde dehydrogenase I 0.50 HP15_3708 4-aminobutyrate aminotransferase low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF1556 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.53 GFF2029 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 90
Rhodopseudomonas palustris CGA009 0.61 TX73_002390 NAD-dependent succinate-semialdehyde dehydrogenase 0.52 TX73_012015 4-aminobutyrate--2-oxoglutarate transaminase low > 86
Shewanella loihica PV-4 0.58 Shew_3173 succinic semialdehyde dehydrogenase (RefSeq) 0.53 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) low > 60
Enterobacter asburiae PDN3 0.58 EX28DRAFT_3290 succinate-semialdehyde dehydrogenase 0.55 EX28DRAFT_4294 4-aminobutyrate aminotransferase, prokaryotic type low > 76
Rahnella sp. WP5 0.57 EX31_RS12300 NAD-dependent succinate-semialdehyde dehydrogenase 0.51 EX31_RS00095 4-aminobutyrate--2-oxoglutarate transaminase low > 89
Enterobacter sp. TBS_079 0.56 MPMX20_04145 Glutarate-semialdehyde dehydrogenase 0.54 MPMX20_04337 4-aminobutyrate aminotransferase PuuE low > 85

Not shown: 19 genomes with orthologs for Pf6N2E2_4014 only; 6 genomes with orthologs for Pf6N2E2_4013 only