Conservation of cofitness between Pf1N1B4_2728 and Pf1N1B4_1914 in Pseudomonas fluorescens FW300-N1B4

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_2728 ATP-dependent helicase HrpB 1.0 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.26 9
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_1395 ATP-dependent helicase HrpB 0.91 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_5038 ATP-dependent helicase HrpB 0.90 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_15485 ATP-dependent helicase 0.90 AO356_11275 16S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_06300 ATP-dependent helicase 0.91 AO353_10630 16S rRNA methyltransferase low > 101
Pseudomonas sp. RS175 0.91 PFR28_03833 ATP-dependent RNA helicase HrpB 0.90 PFR28_04663 Ribosomal RNA small subunit methyltransferase B low > 88
Pseudomonas simiae WCS417 0.89 PS417_24550 ATP-dependent helicase 0.90 PS417_00085 16S rRNA methyltransferase low > 88
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS26480 ATP-dependent helicase HrpB 0.90 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS26480 ATP-dependent helicase HrpB 0.90 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4320 ATP-dependent helicase HrpB 0.83 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4320 ATP-dependent helicase HrpB 0.83 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas putida KT2440 0.80 PP_4772 ATP-dependent helicase HrpB 0.84 PP_0066 Ribosomal RNA small subunit methyltransferase B low > 96
Pseudomonas stutzeri RCH2 0.79 Psest_0629 ATP-dependent helicase HrpB 0.79 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB low > 67
Pseudomonas sp. S08-1 0.79 OH686_08800 ATP-dependent helicase HrpB 0.72 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 80
Magnetospirillum magneticum AMB-1 0.46 AMB_RS06395 ATP-dependent helicase HrpB 0.21 AMB_RS00745 MFS transporter — —
Azospirillum sp. SherDot2 0.45 MPMX19_00095 ATP-dependent RNA helicase HrpB 0.20 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B low > 112
Marinobacter adhaerens HP15 0.43 HP15_3782 RNA helicase, ATP-dependent DEAH box, HrpB type 0.42 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase low > 73
Rhodopseudomonas palustris CGA009 0.40 TX73_002770 ATP-dependent helicase HrpB 0.20 TX73_000155 transcription antitermination factor NusB low > 86
Enterobacter asburiae PDN3 0.39 EX28DRAFT_3737 ATP-dependent helicase HrpB 0.44 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.43 67
Desulfovibrio vulgaris Hildenborough JW710 0.38 DVU1543 hrpB ATP-dependent helicase HrpB (TIGR) 0.14 DVU3363 sun sun protein (TIGR) low > 55
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_01243 ATP-dependent helicase hrpB 0.21 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 67
Caulobacter crescentus NA1000 0.38 CCNA_01243 ATP-dependent helicase hrpB 0.21 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 66
Shewanella oneidensis MR-1 0.38 SO0632 hrpB ATP-dependent helicase HrpB (NCBI ptt file) 0.39 SO0030 sun sun protein (NCBI ptt file) low > 76
Rhodospirillum rubrum S1H 0.38 Rru_A2365 ATP-dependent helicase HrpB (NCBI) 0.20 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF84 ATP-dependent helicase HrpB 0.44 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.354.1 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.31 Xcc-8004.4741.1 hypothetical protein low > 74
Enterobacter sp. TBS_079 0.38 MPMX20_00834 ATP-dependent RNA helicase HrpB 0.44 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Klebsiella michiganensis M5al 0.38 BWI76_RS05030 ATP-dependent helicase 0.44 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Shewanella sp. ANA-3 0.37 Shewana3_0622 ATP-dependent helicase HrpB (RefSeq) 0.40 Shewana3_0033 sun protein (RefSeq) low > 73
Escherichia fergusonii Becca 0.37 EFB2_03896 ATP-dependent RNA helicase HrpB 0.44 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Escherichia coli ECRC100 0.37 OKFHMN_10330 hrpB ATP-dependent helicase HrpB 0.44 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Escherichia coli Nissle 1917 0.37 ECOLIN_RS00830 ATP-dependent helicase HrpB 0.44 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 55
Escherichia coli ECRC99 0.37 KEDOAH_17825 hrpB ATP-dependent helicase HrpB 0.44 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli BW25113 0.37 b0148 hrpB helicase, ATP-dependent (VIMSS) 0.44 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) low > 76
Escherichia coli ECRC101 0.37 MCAODC_00845 hrpB ATP-dependent helicase HrpB 0.44 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli ECRC98 0.37 JDDGAC_13925 hrpB ATP-dependent helicase HrpB 0.44 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Escherichia coli ECRC102 0.37 NIAGMN_08180 hrpB ATP-dependent helicase HrpB 0.44 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECOR38 0.37 HEPCGN_08280 hrpB ATP-dependent helicase HrpB 0.44 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli ECRC62 0.37 BNILDI_08995 hrpB ATP-dependent helicase HrpB 0.44 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_03514 hypothetical protein 0.44 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B low > 73
Escherichia coli BL21 0.37 ECD_00147 putative ATP-dependent helicase 0.44 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent low > 61
Agrobacterium fabrum C58 0.37 Atu0052 helicase 0.20 Atu2825 Sun protein low > 89
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS05425 ATP-dependent helicase HrpB 0.17 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 48
Escherichia coli ECOR27 0.37 NOLOHH_02675 hrpB ATP-dependent helicase HrpB 0.44 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Lysobacter sp. OAE881 0.37 ABIE51_RS00675 ATP-dependent helicase HrpB 0.37 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_16270 hrpA HrpA-like RNA helicase 0.36 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Rhodanobacter denitrificans MT42 0.37 LRK55_RS09655 ATP-dependent helicase HrpB 0.33 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 63
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS10015 ATP-dependent helicase HrpB 0.33 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 59
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS13060 ATP-dependent helicase HrpB 0.37 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Dinoroseobacter shibae DFL-12 0.36 Dshi_2580 ATP-dependent helicase HrpB (RefSeq) 0.19 Dshi_3033 Fmu (Sun) domain protein (RefSeq) low > 64
Serratia liquefaciens MT49 0.36 IAI46_21195 ATP-dependent helicase HrpB 0.47 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_03170 ATP-dependent helicase HrpB 0.47 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Sinorhizobium meliloti 1021 0.36 SMc02586 ATP-dependent helicase 0.19 SMc04090 sun protein low > 103
Shewanella loihica PV-4 0.36 Shew_3124 ATP-dependent helicase HrpB (RefSeq) 0.41 Shew_3738 sun protein (RefSeq) low > 60
Rahnella sp. WP5 0.36 EX31_RS03235 ATP-dependent helicase HrpB 0.46 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Rhizobium sp. OAE497 0.36 ABIE40_RS19515 ATP-dependent helicase HrpB 0.20 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 107
Phaeobacter inhibens DSM 17395 0.34 PGA1_c24190 ATP-dependent RNA helicase HrpB 0.18 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B low > 62
Shewanella amazonensis SB2B 0.34 Sama_2972 ATP-dependent helicase HrpB (RefSeq) 0.41 Sama_0041 sun protein (RefSeq) low > 62
Pantoea sp. MT58 0.34 IAI47_15620 ATP-dependent helicase HrpB 0.46 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Dickeya dianthicola 67-19 0.33 HGI48_RS16035 ATP-dependent helicase HrpB 0.43 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_2125 ATP-dependent helicase HrpB 0.16 Ga0059261_2239 tRNA and rRNA cytosine-C5-methylases low > 68
Pectobacterium carotovorum WPP14 0.33 HER17_RS05595 ATP-dependent helicase HrpB 0.43 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Dickeya dadantii 3937 0.32 DDA3937_RS15920 ATP-dependent helicase HrpB 0.44 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Dickeya dianthicola ME23 0.32 DZA65_RS17120 ATP-dependent helicase HrpB 0.44 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Alteromonas macleodii MIT1002 0.28 MIT1002_00406 ATP-dependent RNA helicase HrpB 0.37 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B low > 70

Not shown: 4 genomes with orthologs for Pf1N1B4_2728 only; 23 genomes with orthologs for Pf1N1B4_1914 only