Conservation of cofitness between PP_4902 and PP_5309 in Pseudomonas putida KT2440

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4902 Oligoribonuclease 1.0 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.37 18
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_08695 oligoribonuclease 0.90 AO356_12385 LysR family transcriptional regulator — —
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3622 3'-to-5' oligoribonuclease (orn) 0.93 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator — —
Pseudomonas sp. RS175 0.92 PFR28_05113 Oligoribonuclease 0.90 PFR28_04434 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_13105 oligoribonuclease 0.88 AO353_09315 LysR family transcriptional regulator — —
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_162 3'-to-5' oligoribonuclease (orn) 0.88 PfGW456L13_773 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1420 3'-to-5' oligoribonuclease (orn) 0.89 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS02530 oligoribonuclease 0.88 PFLU_RS29545 hydrogen peroxide-inducible genes activator — —
Pseudomonas simiae WCS417 0.90 PS417_02450 oligoribonuclease 0.89 PS417_27865 LysR family transcriptional regulator — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS02530 oligoribonuclease 0.88 PFLU_RS29545 hydrogen peroxide-inducible genes activator — —
Pseudomonas stutzeri RCH2 0.88 Psest_0500 Oligoribonuclease (3'->5' exoribonuclease) 0.87 Psest_4191 Transcriptional regulator — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_0564 Exonuclease 0.92 Psyr_0202 transcriptional regulator, LysR family — —
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_0564 Exonuclease 0.92 Psyr_0202 transcriptional regulator, LysR family — —
Pseudomonas sp. S08-1 0.82 OH686_09505 3'-to-5' oligoribonuclease (orn) 0.85 OH686_13510 Hydrogen peroxide-inducible genes activator low > 80
Dickeya dadantii 3937 0.69 DDA3937_RS18940 oligoribonuclease 0.36 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECOR38 0.69 HEPCGN_10540 orn oligoribonuclease 0.36 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli BL21 0.69 ECD_04032 oligoribonuclease 0.36 ECD_03846 oxidative and nitrosative stress transcriptional regulator — —
Escherichia coli ECRC62 0.69 BNILDI_06915 orn oligoribonuclease 0.36 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli BW25113 0.69 b4162 yjeR orf, hypothetical protein (VIMSS) 0.36 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) — —
Enterobacter sp. TBS_079 0.69 MPMX20_00443 Oligoribonuclease 0.36 MPMX20_04519 Hydrogen peroxide-inducible genes activator — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03880 Oligoribonuclease 0.36 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator — —
Escherichia coli Nissle 1917 0.69 ECOLIN_RS24180 oligoribonuclease 0.36 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECOR27 0.69 NOLOHH_04575 orn oligoribonuclease 0.36 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia fergusonii Becca 0.69 EFB2_04373 Oligoribonuclease 0.36 EFB2_04651 Hydrogen peroxide-inducible genes activator — —
Escherichia coli ECRC101 0.69 MCAODC_02825 orn oligoribonuclease 0.36 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC101 0.69 OKFHMN_12315 orn oligoribonuclease 0.36 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC98 0.69 JDDGAC_15950 orn oligoribonuclease 0.36 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC102 0.69 NIAGMN_10160 orn oligoribonuclease 0.36 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR — —
Serratia liquefaciens MT49 0.69 IAI46_01575 oligoribonuclease 0.34 IAI46_24475 DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC99 0.69 KEDOAH_15850 orn oligoribonuclease 0.36 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR — —
Dickeya dianthicola ME23 0.69 DZA65_RS20150 oligoribonuclease 0.36 DZA65_RS21450 DNA-binding transcriptional regulator OxyR — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_01765 oligoribonuclease 0.32 CSW01_13340 DNA-binding transcriptional regulator OxyR — —
Enterobacter asburiae PDN3 0.69 EX28DRAFT_3360 Oligoribonuclease (3'->5' exoribonuclease) 0.36 EX28DRAFT_4424 Transcriptional regulator — —
Dickeya dianthicola 67-19 0.69 HGI48_RS19035 oligoribonuclease 0.36 HGI48_RS20405 DNA-binding transcriptional regulator OxyR — —
Klebsiella michiganensis M5al 0.68 BWI76_RS02480 oligoribonuclease 0.35 BWI76_RS00865 DNA-binding transcriptional regulator OxyR — —
Alteromonas macleodii MIT1002 0.68 MIT1002_00496 Oligoribonuclease 0.25 MIT1002_01120 Morphology and auto-aggregation control protein — —
Shewanella oneidensis MR-1 0.68 SO0592 orn oligoribonuclease (NCBI ptt file) 0.25 SO1328 transcriptional regulator, LysR family (NCBI ptt file) — —
Pectobacterium carotovorum WPP14 0.68 HER17_RS02415 oligoribonuclease 0.36 HER17_RS00955 DNA-binding transcriptional regulator OxyR — —
Pantoea sp. MT58 0.68 IAI47_02540 oligoribonuclease 0.34 IAI47_00930 DNA-binding transcriptional regulator OxyR — —
Shewanella sp. ANA-3 0.68 Shewana3_0590 oligoribonuclease (RefSeq) 0.25 Shewana3_3046 LysR family transcriptional regulator (RefSeq) — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1946 Oligoribonuclease (3'->5' exoribonuclease) 0.54 B158DRAFT_0567 Transcriptional regulator — —
Rahnella sp. WP5 0.67 EX31_RS08865 oligoribonuclease 0.35 EX31_RS14170 DNA-binding transcriptional regulator OxyR — —
Marinobacter adhaerens HP15 0.67 HP15_2506 oligoribonuclease 0.64 HP15_308 oxidative stress regulatory protein OxyR — —
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS07210 oligoribonuclease 0.52 HSERO_RS18935 LysR family transcriptional regulator — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF1989 '3'-to-5' oligoribonuclease (orn)' transl_table=11 0.35 GFF2347 Hydrogen peroxide-inducible genes activator — —
Acinetobacter radioresistens SK82 0.65 MPMX26_02630 Oligoribonuclease 0.27 MPMX26_02334 Hydrogen peroxide-inducible genes activator — —
Erwinia tracheiphila SCR3 0.65 LU632_RS01950 orn oligoribonuclease 0.34 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR — —
Shewanella amazonensis SB2B 0.64 Sama_3032 oligoribonuclease (RefSeq) 0.23 Sama_0860 LysR family transcriptional regulator (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_0559 oligoribonuclease (RefSeq) 0.22 Shew_1035 LysR family transcriptional regulator (RefSeq) — —
Paraburkholderia graminis OAS925 0.64 ABIE53_003119 oligoribonuclease 0.50 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator — —
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.2410.1 3'-to-5' oligoribonuclease (orn) 0.30 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS14770 oligoribonuclease 0.48 RR42_RS17385 LysR family transcriptional regulator — —
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS04255 oligoribonuclease 0.51 QEN71_RS26625 LysR substrate-binding domain-containing protein — —
Lysobacter sp. OAE881 0.62 ABIE51_RS09510 oligoribonuclease 0.30 ABIE51_RS05475 LysR substrate-binding domain-containing protein — —
Dechlorosoma suillum PS 0.62 Dsui_3222 oligoribonuclease (3'->5' exoribonuclease) 0.55 Dsui_0823 transcriptional regulator — —
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04301 oligoribonuclease 0.51 H281DRAFT_04673 transcriptional regulator, LysR family — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14720 oligoribonuclease 0.50 BPHYT_RS03470 LysR family transcriptional regulator — —
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_07465 orn oligoribonuclease 0.32 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR — —
Rhodanobacter denitrificans MT42 0.61 LRK55_RS17690 oligoribonuclease 0.30 LRK55_RS04545 LysR substrate-binding domain-containing protein — —
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS17470 oligoribonuclease 0.30 LRK54_RS04765 LysR substrate-binding domain-containing protein — —
Acidovorax sp. GW101-3H11 0.60 Ac3H11_1677 3'-to-5' oligoribonuclease (orn) 0.47 Ac3H11_784 Hydrogen peroxide-inducible genes activator 0.39 59
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS01910 oligoribonuclease 0.30 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR — —
Castellaniella sp019104865 MT123 0.58 ABCV34_RS06995 oligoribonuclease 0.52 ABCV34_RS03575 LysR substrate-binding domain-containing protein — —
Variovorax sp. SCN45 0.56 GFF3960 3'-to-5' oligoribonuclease (orn) 0.47 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF5731 3'-to-5' oligoribonuclease (orn) 0.44 GFF2803 Hydrogen peroxide-inducible genes activator low > 90
Variovorax sp. OAS795 0.55 ABID97_RS08790 oligoribonuclease 0.46 ABID97_RS01570 LysR substrate-binding domain-containing protein low > 91

Not shown: 1 genomes with orthologs for PP_4902 only; 29 genomes with orthologs for PP_5309 only