| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4546 | | ATP-dependent helicase HrpA | 1.0 | PP_5309 | | oxidative and nitrosative stress transcriptional dual regulator | 0.44 | 13 |
| Pseudomonas syringae pv. syringae B728a | 0.85 | Psyr_3831 | | ATP-dependent helicase HrpA | 0.92 | Psyr_0202 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.85 | Psyr_3831 | | ATP-dependent helicase HrpA | 0.92 | Psyr_0202 | | transcriptional regulator, LysR family | 0.49 | 13 |
| Pseudomonas fluorescens FW300-N2E2 | 0.85 | Pf6N2E2_2694 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | 0.93 | Pf6N2E2_4353 | | Hydrogen peroxide-inducible genes activator | low | > 103 |
| Pseudomonas sp. RS175 | 0.85 | PFR28_00739 | | hypothetical protein | 0.90 | PFR28_04434 | | Hydrogen peroxide-inducible genes activator | 0.20 | 56 |
| Pseudomonas simiae WCS417 | 0.85 | PS417_20575 | | ATP-dependent helicase HrpA | 0.89 | PS417_27865 | | LysR family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.85 | AO353_18225 | | ATP-dependent RNA helicase HrpA | 0.88 | AO353_09315 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.85 | AO356_04280 | | ATP-dependent RNA helicase HrpA | 0.90 | AO356_12385 | | LysR family transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_4467 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | 0.88 | PfGW456L13_773 | | Hydrogen peroxide-inducible genes activator | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.85 | PFLU_RS22265 | | ATP-dependent RNA helicase HrpA | 0.88 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | 0.56 | 29 |
| Pseudomonas fluorescens SBW25-INTG | 0.85 | PFLU_RS22265 | | ATP-dependent RNA helicase HrpA | 0.88 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.85 | Pf1N1B4_3388 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | 0.89 | Pf1N1B4_2106 | | Hydrogen peroxide-inducible genes activator | low | > 87 |
| Pseudomonas sp. S08-1 | 0.80 | OH686_05730 | | RNA helicase HrpA | 0.85 | OH686_13510 | | Hydrogen peroxide-inducible genes activator | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.78 | Psest_1339 | | ATP-dependent helicase HrpA | 0.87 | Psest_4191 | | Transcriptional regulator | low | > 67 |
| Marinobacter adhaerens HP15 | 0.48 | HP15_1863 | | RNA helicase, ATP-dependent DEAH box, HrpA type | 0.64 | HP15_308 | | oxidative stress regulatory protein OxyR | low | > 73 |
| Shewanella loihica PV-4 | 0.48 | Shew_1767 | | ATP-dependent helicase HrpA (RefSeq) | 0.22 | Shew_1035 | | LysR family transcriptional regulator (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.48 | Shewana3_1897 | | ATP-dependent helicase HrpA (RefSeq) | 0.25 | Shewana3_3046 | | LysR family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.48 | SO2229 | hrpA | ATP-dependent helicase HrpA (NCBI ptt file) | 0.25 | SO1328 | | transcriptional regulator, LysR family (NCBI ptt file) | low | > 76 |
| Dickeya dadantii 3937 | 0.48 | DDA3937_RS12270 | | ATP-dependent RNA helicase HrpA | 0.36 | DDA3937_RS00970 | | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_13330 | | ATP-dependent RNA helicase HrpA | 0.34 | IAI46_24475 | | DNA-binding transcriptional regulator OxyR | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.47 | CSW01_06950 | | ATP-dependent RNA helicase HrpA | 0.32 | CSW01_13340 | | DNA-binding transcriptional regulator OxyR | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS09660 | | ATP-dependent RNA helicase HrpA | 0.36 | HER17_RS00955 | | DNA-binding transcriptional regulator OxyR | low | > 75 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS12800 | | ATP-dependent RNA helicase HrpA | 0.36 | DZA65_RS21450 | | DNA-binding transcriptional regulator OxyR | low | > 75 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS12360 | | ATP-dependent RNA helicase HrpA | 0.36 | HGI48_RS20405 | | DNA-binding transcriptional regulator OxyR | low | > 71 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.47 | GFF2632 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | 0.35 | GFF2347 | | Hydrogen peroxide-inducible genes activator | low | > 78 |
| Escherichia fergusonii Becca | 0.47 | EFB2_02565 | | hypothetical protein | 0.36 | EFB2_04651 | | Hydrogen peroxide-inducible genes activator | low | > 86 |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS08180 | | ATP-dependent RNA helicase HrpA | 0.36 | ECOLIN_RS22870 | | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_25865 | hrpA | ATP-dependent RNA helicase HrpA | 0.36 | NIAGMN_11315 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_26710 | hrpA | ATP-dependent RNA helicase HrpA | 0.36 | KEDOAH_14595 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_04220 | hrpA | ATP-dependent RNA helicase HrpA | 0.36 | JDDGAC_17190 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC101 | 0.47 | MCAODC_16205 | hrpA | ATP-dependent RNA helicase HrpA | 0.36 | MCAODC_04065 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC101 | 0.47 | OKFHMN_01730 | hrpA | ATP-dependent RNA helicase HrpA | 0.36 | OKFHMN_13565 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli BL21 | 0.47 | ECD_01368 | | putative ATP-dependent helicase | 0.36 | ECD_03846 | | oxidative and nitrosative stress transcriptional regulator | low | > 60 |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_26110 | hrpA | ATP-dependent RNA helicase HrpA | 0.36 | HEPCGN_12210 | oxyR | DNA-binding transcriptional regulator OxyR | low | > 85 |
| Shewanella amazonensis SB2B | 0.47 | Sama_1619 | | ATP-dependent helicase HrpA (RefSeq) | 0.23 | Sama_0860 | | LysR family transcriptional regulator (RefSeq) | low | > 62 |
| Escherichia coli ECRC62 | 0.47 | BNILDI_17845 | hrpA | ATP-dependent RNA helicase HrpA | 0.36 | BNILDI_05825 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_19390 | hrpA | ATP-dependent RNA helicase HrpA | 0.36 | NOLOHH_05700 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_1357 | | RNA helicase HrpA | 0.36 | EX28DRAFT_4424 | | Transcriptional regulator | — | — |
| Escherichia coli BW25113 | 0.47 | b1413 | hrpA | ATP-dependent helicase (RefSeq) | 0.36 | b3961 | oxyR | DNA-binding transcriptional dual regulator (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.47 | OHPLBJKB_02301 | | hypothetical protein | 0.36 | OHPLBJKB_04089 | | Hydrogen peroxide-inducible genes activator | low | > 73 |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_02189 | | hypothetical protein | 0.36 | MPMX20_04519 | | Hydrogen peroxide-inducible genes activator | low | > 85 |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS13165 | | ATP-dependent RNA helicase HrpA | 0.35 | BWI76_RS00865 | | DNA-binding transcriptional regulator OxyR | low | > 92 |
| Pantoea sp. MT58 | 0.46 | IAI47_09520 | | ATP-dependent RNA helicase HrpA | 0.34 | IAI47_00930 | | DNA-binding transcriptional regulator OxyR | low | > 76 |
| Rahnella sp. WP5 | 0.46 | EX31_RS06495 | | ATP-dependent RNA helicase HrpA | 0.35 | EX31_RS14170 | | DNA-binding transcriptional regulator OxyR | low | > 89 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_01685 | | ATP-dependent RNA helicase HrpB | 0.25 | MIT1002_01120 | | Morphology and auto-aggregation control protein | low | > 70 |
| Erwinia tracheiphila SCR3 | 0.45 | LU632_RS12630 | hrpA | ATP-dependent RNA helicase HrpA | 0.34 | LU632_RS19590 | oxyR | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS13030 | | ATP-dependent helicase | 0.48 | RR42_RS17385 | | LysR family transcriptional regulator | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS11020 | | ATP-dependent RNA helicase HrpA | 0.50 | ABZR87_RS01255 | | LysR substrate-binding domain-containing protein | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS17865 | | ATP-dependent RNA helicase HrpA | 0.51 | RPSI07_RS11690 | | hydrogen peroxide-inducible genes activator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS06270 | | ATP-dependent RNA helicase HrpA | 0.51 | RS_RS13470 | | hydrogen peroxide-inducible genes activator | low | > 80 |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS12950 | | ATP-dependent RNA helicase HrpA | 0.51 | UW163_RS08020 | | hydrogen peroxide-inducible genes activator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS15490 | | ATP-dependent RNA helicase HrpA | 0.51 | RALBFv3_RS05605 | | hydrogen peroxide-inducible genes activator | low | > 76 |
| Dechlorosoma suillum PS | 0.41 | Dsui_1373 | | ATP-dependent helicase HrpA | 0.55 | Dsui_0823 | | transcriptional regulator | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.40 | ABCV34_RS02420 | | ATP-dependent RNA helicase HrpA | 0.52 | ABCV34_RS03575 | | LysR substrate-binding domain-containing protein | low | > 48 |
| Paraburkholderia graminis OAS925 | 0.40 | ABIE53_002813 | | ATP-dependent helicase HrpA | 0.50 | ABIE53_000834 | | LysR family hydrogen peroxide-inducible transcriptional activator | low | > 113 |
| Kangiella aquimarina DSM 16071 | 0.39 | B158DRAFT_1779 | | ATP-dependent helicase HrpA | 0.54 | B158DRAFT_0567 | | Transcriptional regulator | low | > 40 |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS17315 | | ATP-dependent helicase | 0.52 | HSERO_RS18935 | | LysR family transcriptional regulator | low | > 78 |
| Variovorax sp. OAS795 | 0.39 | ABID97_RS16615 | | ATP-dependent RNA helicase HrpA | 0.46 | ABID97_RS01570 | | LysR substrate-binding domain-containing protein | low | > 91 |
| Dyella japonica UNC79MFTsu3.2 | 0.39 | ABZR86_RS19720 | | ATP-dependent RNA helicase HrpA | 0.30 | ABZR86_RS19355 | | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.38 | Ac3H11_896 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | 0.47 | Ac3H11_784 | | Hydrogen peroxide-inducible genes activator | low | > 79 |
| Variovorax sp. SCN45 | 0.38 | GFF247 | | ATP-dependent helicase HrpA | 0.47 | GFF5549 | | Hydrogen peroxide-inducible genes activator => OxyR | 0.57 | 6 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF4301 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | 0.44 | GFF2803 | | Hydrogen peroxide-inducible genes activator | low | > 90 |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_02008 | | hypothetical protein | 0.27 | MPMX26_02334 | | Hydrogen peroxide-inducible genes activator | 0.63 | 17 |
| Paraburkholderia sabiae LMG 24235 | 0.37 | QEN71_RS05625 | | ATP-dependent RNA helicase HrpA | 0.51 | QEN71_RS26625 | | LysR substrate-binding domain-containing protein | low | > 153 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS05155 | | ATP-dependent RNA helicase HrpA | 0.30 | ABIE51_RS05475 | | LysR substrate-binding domain-containing protein | low | > 62 |
| Rhodanobacter denitrificans MT42 | 0.36 | LRK55_RS12420 | | ATP-dependent RNA helicase HrpA | 0.30 | LRK55_RS04545 | | LysR substrate-binding domain-containing protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS12715 | | ATP-dependent RNA helicase HrpA | 0.30 | LRK54_RS04765 | | LysR substrate-binding domain-containing protein | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.35 | OKGIIK_02155 | hrpA | ATP-dependent RNA helicase HrpA | 0.32 | OKGIIK_01995 | lysR | DNA-binding transcriptional regulator OxyR | low | > 52 |
Not shown: 1 genomes with orthologs for PP_4546 only; 27 genomes with orthologs for PP_5309 only