Conservation of cofitness between PP_0246 and PP_4900 in Pseudomonas putida KT2440

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0246 two-component system DNA-binding response transcriptional dual regulator 1.0 PP_4900 epoxyqueuosine reductase 0.25 16
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_1772 Two-component system response regulator OmpR 0.82 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG — —
Pseudomonas sp. RS175 0.92 PFR28_04868 Transcriptional regulatory protein OmpR 0.81 PFR28_05115 Epoxyqueuosine reductase low > 88
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_11745 chemotaxis protein CheY 0.82 AO353_13115 epoxyqueuosine reductase — —
Pseudomonas simiae WCS417 0.92 PS417_01170 chemotaxis protein CheY 0.82 PS417_02460 epoxyqueuosine reductase — —
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS01280 two-component system response regulator OmpR 0.82 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG — —
Pseudomonas fluorescens SBW25 0.92 PFLU_RS01280 two-component system response regulator OmpR 0.82 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_427 Two-component system response regulator OmpR 0.81 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_10170 chemotaxis protein CheY 0.81 AO356_08685 epoxyqueuosine reductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3905 Two-component system response regulator OmpR 0.81 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG — —
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0258 Two-component response regulator OmpR 0.82 Psyr_0566 4Fe-4S cluster binding protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0258 Two-component response regulator OmpR 0.82 Psyr_0566 4Fe-4S cluster binding protein — —
Pseudomonas sp. S08-1 0.84 OH686_11095 Two-component system response regulator OmpR 0.82 OH686_09500 epoxyqueuosine reductase low > 80
Pseudomonas stutzeri RCH2 0.81 Psest_3995 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.78 Psest_0677 iron-sulfur cluster binding protein, putative low > 67
Shewanella loihica PV-4 0.69 Shew_3637 ompR osmolarity response regulator (RefSeq) 0.54 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.69 Shewana3_4017 ompR osmolarity response regulator (RefSeq) 0.54 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_13695 two-component system response regulator OmpR 0.57 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG low > 62
Shewanella oneidensis MR-1 0.69 SO4633 ompR transcriptional regulatory protein OmpR (NCBI ptt file) 0.54 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.68 Sama_3510 ompR osmolarity response regulator (RefSeq) 0.53 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.67 MIT1002_03968 Transcriptional regulatory protein OmpR 0.59 MIT1002_03794 Epoxyqueuosine reductase low > 70
Serratia liquefaciens MT49 0.67 IAI46_23790 two-component system response regulator OmpR 0.57 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG low > 86
Rahnella sp. WP5 0.67 EX31_RS04800 two-component system response regulator OmpR 0.56 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG low > 89
Dickeya dadantii 3937 0.67 DDA3937_RS19620 two-component system response regulator OmpR 0.57 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF613 Two-component system response regulator OmpR 0.57 GFF819 Epoxyqueuosine (oQ) reductase QueG low > 78
Escherichia coli BW25113 0.67 b3405 ompR osmolarity response regulator (NCBI) 0.57 b4166 yjeS predicted Fe-S electron transport protein (NCBI) low > 76
Escherichia coli ECRC99 0.67 KEDOAH_11105 ompR_G63V two-component system response regulator OmpR 0.57 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG — —
Klebsiella michiganensis M5al 0.67 BWI76_RS26665 DNA-binding response regulator 0.56 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG low > 92
Escherichia coli ECRC62 0.67 BNILDI_02695 ompR_G63V two-component system response regulator OmpR 0.57 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS01700 two-component system response regulator OmpR 0.58 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG low > 75
Escherichia coli Nissle 1917 0.67 ECOLIN_RS19455 two-component system response regulator OmpR 0.56 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG low > 52
Escherichia coli ECRC98 0.67 JDDGAC_20665 ompR_G63V two-component system response regulator OmpR 0.57 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG — —
Dickeya dianthicola 67-19 0.67 HGI48_RS19750 two-component system response regulator OmpR 0.57 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG low > 71
Escherichia coli ECOR27 0.67 NOLOHH_08825 ompR_G63V two-component system response regulator OmpR 0.57 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG low > 57
Escherichia coli ECRC101 0.67 MCAODC_07565 ompR_G63V two-component system response regulator OmpR 0.56 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECOR38 0.67 HEPCGN_15845 ompR_G63V two-component system response regulator OmpR 0.57 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG low > 85
Dickeya dianthicola ME23 0.67 DZA65_RS20840 two-component system response regulator OmpR 0.56 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG low > 75
Escherichia coli ECRC102 0.67 NIAGMN_14805 ompR_G63V two-component system response regulator OmpR 0.57 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC101 0.67 OKFHMN_17035 ompR_G63V two-component system response regulator OmpR 0.57 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia fergusonii Becca 0.67 EFB2_00423 Transcriptional regulatory protein OmpR 0.56 EFB2_04369 Epoxyqueuosine reductase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00298 Transcriptional regulatory protein OmpR 0.57 OHPLBJKB_03876 Epoxyqueuosine reductase low > 73
Enterobacter asburiae PDN3 0.67 EX28DRAFT_4138 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.56 EX28DRAFT_3363 epoxyqueuosine reductase low > 76
Pantoea sp. MT58 0.67 IAI47_01820 two-component system response regulator OmpR 0.57 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG low > 76
Enterobacter sp. TBS_079 0.67 MPMX20_04292 Transcriptional regulatory protein OmpR 0.56 MPMX20_00447 Epoxyqueuosine reductase low > 85
Escherichia coli BL21 0.67 ECD_03257 response regulator in two-component regulatory system with EnvZ 0.57 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis low > 60
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_0684 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.48 B158DRAFT_0486 iron-sulfur cluster binding protein, putative low > 40
Acinetobacter radioresistens SK82 0.65 MPMX26_02838 Transcriptional regulatory protein OmpR 0.52 MPMX26_01783 Epoxyqueuosine reductase low > 36
Variovorax sp. OAS795 0.59 ABID97_RS17265 two-component system response regulator OmpR 0.55 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG low > 91
Variovorax sp. SCN45 0.59 GFF408 Two-component system response regulator OmpR 0.51 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG low > 127
Acidovorax sp. GW101-3H11 0.58 Ac3H11_343 Two-component system response regulator OmpR 0.55 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF4930 Two-component system response regulator OmpR 0.56 GFF5474 Epoxyqueuosine (oQ) reductase QueG low > 90
Ralstonia solanacearum GMI1000 0.55 RS_RS08305 two-component system response regulator OmpR 0.53 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG — —
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS13210 two-component system response regulator OmpR 0.52 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG low > 80
Ralstonia solanacearum UW163 0.55 UW163_RS14725 two-component system response regulator OmpR 0.53 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS01415 two-component system response regulator OmpR 0.53 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG low > 76
Ralstonia solanacearum PSI07 0.55 RPSI07_RS16070 two-component system response regulator OmpR 0.53 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG low > 81
Paraburkholderia graminis OAS925 0.55 ABIE53_002101 two-component system phosphate regulon response regulator OmpR 0.54 ABIE53_003363 epoxyqueuosine reductase low > 113
Castellaniella sp019104865 MT123 0.55 ABCV34_RS08585 two-component system response regulator OmpR 0.52 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG — —
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS07885 chemotaxis protein CheY 0.52 RR42_RS03405 epoxyqueuosine reductase low > 128
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_00886 two component transcriptional regulator, winged helix family 0.52 H281DRAFT_04128 epoxyqueuosine reductase low > 103
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS09315 chemotaxis protein CheY 0.53 BPHYT_RS15960 iron-sulfur cluster binding protein low > 109
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS22030 two-component system response regulator OmpR 0.52 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG low > 153
Dechlorosoma suillum PS 0.54 Dsui_2401 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain 0.50 Dsui_3502 iron-sulfur cluster binding protein, putative low > 51
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS10760 chemotaxis protein CheY 0.57 HSERO_RS04220 epoxyqueuosine reductase — —
Agrobacterium fabrum C58 0.35 Atu2206 two component response regulator 0.33 Atu0292 iron-sulfur cluster binding protein — —
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_03026 two-component response regulator petR 0.35 CCNA_03753 iron-sulfur cluster-binding protein low > 67
Caulobacter crescentus NA1000 0.34 CCNA_03026 two-component response regulator petR 0.35 CCNA_03753 iron-sulfur cluster-binding protein low > 66
Phaeobacter inhibens DSM 17395 0.33 PGA1_c34130 protein PetR 0.33 PGA1_c34310 Uncharacterized Fe-S protein — —
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS09825 response regulator transcription factor 0.34 A4249_RS11375 tRNA epoxyqueuosine(34) reductase QueG — —
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS15940 DNA-binding response regulator 0.35 CA265_RS07695 tRNA epoxyqueuosine(34) reductase QueG — —

Not shown: 1 genomes with orthologs for PP_0246 only; 21 genomes with orthologs for PP_4900 only