Conservation of cofitness between PP_4902 and PP_4880 in Pseudomonas putida KT2440

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4902 Oligoribonuclease 1.0 PP_4880 exoribonuclease R 0.49 1
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_08695 oligoribonuclease 0.82 AO356_08610 exoribonuclease R — —
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3622 3'-to-5' oligoribonuclease (orn) 0.82 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R — —
Pseudomonas sp. RS175 0.92 PFR28_05113 Oligoribonuclease 0.83 PFR28_05130 Ribonuclease R — —
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_13105 oligoribonuclease 0.83 AO353_13200 exoribonuclease R — —
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_162 3'-to-5' oligoribonuclease (orn) 0.83 PfGW456L13_144 3'-to-5' exoribonuclease RNase R — —
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1420 3'-to-5' oligoribonuclease (orn) 0.82 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R — —
Pseudomonas simiae WCS417 0.90 PS417_02450 oligoribonuclease 0.81 PS417_02555 exoribonuclease R — —
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS02530 oligoribonuclease 0.81 PFLU_RS02625 ribonuclease R — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS02530 oligoribonuclease 0.81 PFLU_RS02625 ribonuclease R — —
Pseudomonas stutzeri RCH2 0.88 Psest_0500 Oligoribonuclease (3'->5' exoribonuclease) 0.75 Psest_0691 ribonuclease R — —
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_0564 Exonuclease 0.81 Psyr_0579 RNAse R — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_0564 Exonuclease 0.81 Psyr_0579 RNAse R — —
Pseudomonas sp. S08-1 0.82 OH686_09505 3'-to-5' oligoribonuclease (orn) 0.78 OH686_15910 ribonuclease R low > 80
Escherichia coli Nissle 1917 0.69 ECOLIN_RS24180 oligoribonuclease 0.45 ECOLIN_RS24265 ribonuclease R — —
Escherichia coli ECOR27 0.69 NOLOHH_04575 orn oligoribonuclease 0.45 NOLOHH_04485 rnr ribonuclease R — —
Dickeya dadantii 3937 0.69 DDA3937_RS18940 oligoribonuclease 0.45 DDA3937_RS17260 ribonuclease R — —
Escherichia fergusonii Becca 0.69 EFB2_04373 Oligoribonuclease 0.45 EFB2_04356 Ribonuclease R — —
Escherichia coli BW25113 0.69 b4162 yjeR orf, hypothetical protein (VIMSS) 0.45 b4179 vacB putative enzyme (VIMSS) — —
Escherichia coli BL21 0.69 ECD_04032 oligoribonuclease 0.45 ECD_04046 exoribonuclease R, RNase R — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03880 Oligoribonuclease 0.45 OHPLBJKB_03863 Ribonuclease R — —
Escherichia coli ECRC62 0.69 BNILDI_06915 orn oligoribonuclease 0.45 BNILDI_07005 rnr ribonuclease R — —
Enterobacter sp. TBS_079 0.69 MPMX20_00443 Oligoribonuclease 0.45 MPMX20_00460 Ribonuclease R — —
Escherichia coli ECOR38 0.69 HEPCGN_10540 orn oligoribonuclease 0.45 HEPCGN_10450 rnr ribonuclease R — —
Serratia liquefaciens MT49 0.69 IAI46_01575 oligoribonuclease 0.45 IAI46_01660 ribonuclease R — —
Escherichia coli ECRC99 0.69 KEDOAH_15850 orn oligoribonuclease 0.45 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECRC101 0.69 OKFHMN_12315 orn oligoribonuclease 0.45 OKFHMN_12220 rnr ribonuclease R — —
Escherichia coli ECRC98 0.69 JDDGAC_15950 orn oligoribonuclease 0.45 JDDGAC_15860 rnr ribonuclease R — —
Escherichia coli ECRC101 0.69 MCAODC_02825 orn oligoribonuclease 0.45 MCAODC_02735 rnr ribonuclease R — —
Escherichia coli ECRC102 0.69 NIAGMN_10160 orn oligoribonuclease 0.45 NIAGMN_10070 rnr ribonuclease R — —
Dickeya dianthicola 67-19 0.69 HGI48_RS19035 oligoribonuclease 0.45 HGI48_RS17315 ribonuclease R — —
Dickeya dianthicola ME23 0.69 DZA65_RS20150 oligoribonuclease 0.45 DZA65_RS18405 ribonuclease R — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_01765 oligoribonuclease 0.45 CSW01_13155 ribonuclease R — —
Enterobacter asburiae PDN3 0.69 EX28DRAFT_3360 Oligoribonuclease (3'->5' exoribonuclease) 0.45 EX28DRAFT_3376 ribonuclease R — —
Alteromonas macleodii MIT1002 0.68 MIT1002_00496 Oligoribonuclease 0.45 MIT1002_03606 Ribonuclease R — —
Shewanella oneidensis MR-1 0.68 SO0592 orn oligoribonuclease (NCBI ptt file) 0.44 SO3935 vacB ribonuclease R (NCBI ptt file) — —
Pectobacterium carotovorum WPP14 0.68 HER17_RS02415 oligoribonuclease 0.45 HER17_RS03835 ribonuclease R — —
Klebsiella michiganensis M5al 0.68 BWI76_RS02480 oligoribonuclease 0.45 BWI76_RS02575 exoribonuclease R — —
Pantoea sp. MT58 0.68 IAI47_02540 oligoribonuclease 0.46 IAI47_02625 ribonuclease R — —
Shewanella sp. ANA-3 0.68 Shewana3_0590 oligoribonuclease (RefSeq) 0.45 Shewana3_0697 RNAse R (RefSeq) — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1946 Oligoribonuclease (3'->5' exoribonuclease) 0.45 B158DRAFT_1989 ribonuclease R — —
Marinobacter adhaerens HP15 0.67 HP15_2506 oligoribonuclease 0.47 HP15_622 exoribonuclease R — —
Rahnella sp. WP5 0.67 EX31_RS08865 oligoribonuclease 0.46 EX31_RS08785 ribonuclease R — —
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS07210 oligoribonuclease 0.41 HSERO_RS09290 ribonuclease R — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF1989 '3'-to-5' oligoribonuclease (orn)' transl_table=11 0.45 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 — —
Acinetobacter radioresistens SK82 0.65 MPMX26_02630 Oligoribonuclease 0.35 MPMX26_02684 Ribonuclease R — —
Erwinia tracheiphila SCR3 0.65 LU632_RS01950 orn oligoribonuclease 0.46 LU632_RS21750 rnr ribonuclease R — —
Shewanella amazonensis SB2B 0.64 Sama_3032 oligoribonuclease (RefSeq) 0.43 Sama_3067 exoribonuclease II (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_0559 oligoribonuclease (RefSeq) 0.45 Shew_3289 ribonuclease R (RefSeq) — —
Paraburkholderia graminis OAS925 0.64 ABIE53_003119 oligoribonuclease 0.41 ABIE53_001940 ribonuclease R — —
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.2410.1 3'-to-5' oligoribonuclease (orn) 0.38 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS14770 oligoribonuclease 0.43 RR42_RS13065 ribonuclease R — —
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS04255 oligoribonuclease 0.41 QEN71_RS22925 ribonuclease R — —
Lysobacter sp. OAE881 0.62 ABIE51_RS09510 oligoribonuclease 0.38 ABIE51_RS07475 ribonuclease R — —
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04301 oligoribonuclease 0.41 H281DRAFT_00712 RNAse R — —
Dechlorosoma suillum PS 0.62 Dsui_3222 oligoribonuclease (3'->5' exoribonuclease) 0.44 Dsui_3128 ribonuclease R — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14720 oligoribonuclease 0.41 BPHYT_RS08455 ribonuclease R — —
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_07465 orn oligoribonuclease 0.39 OKGIIK_06755 rnr ribonuclease R — —
Rhodanobacter denitrificans MT42 0.61 LRK55_RS17690 oligoribonuclease 0.39 LRK55_RS00235 ribonuclease R — —
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS17470 oligoribonuclease 0.39 LRK54_RS00495 ribonuclease R — —
Acidovorax sp. GW101-3H11 0.60 Ac3H11_1677 3'-to-5' oligoribonuclease (orn) 0.38 Ac3H11_412 3'-to-5' exoribonuclease RNase R low > 79
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS01910 oligoribonuclease 0.39 ABZR86_RS08270 ribonuclease R — —
Castellaniella sp019104865 MT123 0.58 ABCV34_RS06995 oligoribonuclease 0.38 ABCV34_RS06625 ribonuclease R — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF5731 3'-to-5' oligoribonuclease (orn) 0.35 GFF4921 3'-to-5' exoribonuclease RNase R low > 90
Variovorax sp. SCN45 0.56 GFF3960 3'-to-5' oligoribonuclease (orn) 0.37 GFF399 3'-to-5' exoribonuclease RNase R 0.85 3
Variovorax sp. OAS795 0.55 ABID97_RS08790 oligoribonuclease 0.38 ABID97_RS17200 ribonuclease R low > 91

Not shown: 1 genomes with orthologs for PP_4902 only; 26 genomes with orthologs for PP_4880 only