Conservation of cofitness between PP_4546 and PP_4880 in Pseudomonas putida KT2440

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4546 ATP-dependent helicase HrpA 1.0 PP_4880 exoribonuclease R 0.47 7
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.81 Psyr_0579 RNAse R low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.81 Psyr_0579 RNAse R 0.32 77
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.82 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R 0.34 7
Pseudomonas simiae WCS417 0.85 PS417_20575 ATP-dependent helicase HrpA 0.81 PS417_02555 exoribonuclease R 0.21 73
Pseudomonas sp. RS175 0.85 PFR28_00739 hypothetical protein 0.83 PFR28_05130 Ribonuclease R low > 88
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_18225 ATP-dependent RNA helicase HrpA 0.83 AO353_13200 exoribonuclease R 0.23 98
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_04280 ATP-dependent RNA helicase HrpA 0.82 AO356_08610 exoribonuclease R low > 104
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.83 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens SBW25 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.81 PFLU_RS02625 ribonuclease R 0.56 31
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.81 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.82 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas sp. S08-1 0.80 OH686_05730 RNA helicase HrpA 0.78 OH686_15910 ribonuclease R low > 80
Pseudomonas stutzeri RCH2 0.78 Psest_1339 ATP-dependent helicase HrpA 0.75 Psest_0691 ribonuclease R low > 67
Marinobacter adhaerens HP15 0.48 HP15_1863 RNA helicase, ATP-dependent DEAH box, HrpA type 0.47 HP15_622 exoribonuclease R low > 73
Shewanella loihica PV-4 0.48 Shew_1767 ATP-dependent helicase HrpA (RefSeq) 0.45 Shew_3289 ribonuclease R (RefSeq) 0.22 43
Shewanella sp. ANA-3 0.48 Shewana3_1897 ATP-dependent helicase HrpA (RefSeq) 0.45 Shewana3_0697 RNAse R (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) 0.44 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.48 IAI46_13330 ATP-dependent RNA helicase HrpA 0.45 IAI46_01660 ribonuclease R low > 86
Dickeya dadantii 3937 0.48 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.45 DDA3937_RS17260 ribonuclease R low > 74
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_06950 ATP-dependent RNA helicase HrpA 0.45 CSW01_13155 ribonuclease R low > 62
Pectobacterium carotovorum WPP14 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.45 HER17_RS03835 ribonuclease R 0.65 67
Dickeya dianthicola ME23 0.47 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.45 DZA65_RS18405 ribonuclease R low > 75
Dickeya dianthicola 67-19 0.47 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.45 HGI48_RS17315 ribonuclease R low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.45 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.62 12
Escherichia coli Nissle 1917 0.47 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.45 ECOLIN_RS24265 ribonuclease R — —
Escherichia fergusonii Becca 0.47 EFB2_02565 hypothetical protein 0.45 EFB2_04356 Ribonuclease R low > 86
Escherichia coli ECRC99 0.47 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.45 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECRC101 0.47 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.45 MCAODC_02735 rnr ribonuclease R — —
Escherichia coli ECRC102 0.47 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.45 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli ECRC101 0.47 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.45 OKFHMN_12220 rnr ribonuclease R — —
Escherichia coli ECRC98 0.47 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.45 JDDGAC_15860 rnr ribonuclease R — —
Escherichia coli BL21 0.47 ECD_01368 putative ATP-dependent helicase 0.45 ECD_04046 exoribonuclease R, RNase R low > 60
Shewanella amazonensis SB2B 0.47 Sama_1619 ATP-dependent helicase HrpA (RefSeq) 0.43 Sama_3067 exoribonuclease II (RefSeq) 0.24 10
Escherichia coli ECOR38 0.47 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.45 HEPCGN_10450 rnr ribonuclease R low > 85
Escherichia coli ECRC62 0.47 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.45 BNILDI_07005 rnr ribonuclease R — —
Escherichia coli ECOR27 0.47 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.45 NOLOHH_04485 rnr ribonuclease R — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_1357 RNA helicase HrpA 0.45 EX28DRAFT_3376 ribonuclease R low > 76
Escherichia coli BW25113 0.47 b1413 hrpA ATP-dependent helicase (RefSeq) 0.45 b4179 vacB putative enzyme (VIMSS) 0.20 32
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_02301 hypothetical protein 0.45 OHPLBJKB_03863 Ribonuclease R 0.82 10
Enterobacter sp. TBS_079 0.47 MPMX20_02189 hypothetical protein 0.45 MPMX20_00460 Ribonuclease R 0.26 28
Klebsiella michiganensis M5al 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.45 BWI76_RS02575 exoribonuclease R low > 92
Pantoea sp. MT58 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA 0.46 IAI47_02625 ribonuclease R low > 76
Rahnella sp. WP5 0.46 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.46 EX31_RS08785 ribonuclease R low > 89
Alteromonas macleodii MIT1002 0.45 MIT1002_01685 ATP-dependent RNA helicase HrpB 0.45 MIT1002_03606 Ribonuclease R low > 70
Erwinia tracheiphila SCR3 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.46 LU632_RS21750 rnr ribonuclease R 0.55 27
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS13030 ATP-dependent helicase 0.43 RR42_RS13065 ribonuclease R 0.32 122
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11020 ATP-dependent RNA helicase HrpA 0.41 ABZR87_RS10985 ribonuclease R low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17865 ATP-dependent RNA helicase HrpA 0.42 RPSI07_RS18030 ribonuclease R 0.72 11
Ralstonia solanacearum GMI1000 0.41 RS_RS06270 ATP-dependent RNA helicase HrpA 0.42 RS_RS06155 ribonuclease R low > 80
Ralstonia solanacearum UW163 0.41 UW163_RS12950 ATP-dependent RNA helicase HrpA 0.41 UW163_RS12810 ribonuclease R — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS15490 ATP-dependent RNA helicase HrpA 0.41 RALBFv3_RS15345 ribonuclease R low > 76
Dechlorosoma suillum PS 0.41 Dsui_1373 ATP-dependent helicase HrpA 0.44 Dsui_3128 ribonuclease R low > 51
Castellaniella sp019104865 MT123 0.40 ABCV34_RS02420 ATP-dependent RNA helicase HrpA 0.38 ABCV34_RS06625 ribonuclease R low > 48
Paraburkholderia graminis OAS925 0.40 ABIE53_002813 ATP-dependent helicase HrpA 0.41 ABIE53_001940 ribonuclease R 0.25 18
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_1779 ATP-dependent helicase HrpA 0.45 B158DRAFT_1989 ribonuclease R 0.48 31
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS17315 ATP-dependent helicase 0.41 HSERO_RS09290 ribonuclease R low > 78
Variovorax sp. OAS795 0.39 ABID97_RS16615 ATP-dependent RNA helicase HrpA 0.38 ABID97_RS17200 ribonuclease R low > 91
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19720 ATP-dependent RNA helicase HrpA 0.39 ABZR86_RS08270 ribonuclease R low > 74
Acidovorax sp. GW101-3H11 0.38 Ac3H11_896 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.38 Ac3H11_412 3'-to-5' exoribonuclease RNase R low > 79
Variovorax sp. SCN45 0.38 GFF247 ATP-dependent helicase HrpA 0.37 GFF399 3'-to-5' exoribonuclease RNase R low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4301 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.35 GFF4921 3'-to-5' exoribonuclease RNase R low > 90
Acinetobacter radioresistens SK82 0.37 MPMX26_02008 hypothetical protein 0.35 MPMX26_02684 Ribonuclease R low > 36
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS05625 ATP-dependent RNA helicase HrpA 0.41 QEN71_RS22925 ribonuclease R 0.72 10
Lysobacter sp. OAE881 0.37 ABIE51_RS05155 ATP-dependent RNA helicase HrpA 0.38 ABIE51_RS07475 ribonuclease R low > 62
Rhodanobacter denitrificans MT42 0.36 LRK55_RS12420 ATP-dependent RNA helicase HrpA 0.39 LRK55_RS00235 ribonuclease R low > 63
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS12715 ATP-dependent RNA helicase HrpA 0.39 LRK54_RS00495 ribonuclease R low > 59
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_02155 hrpA ATP-dependent RNA helicase HrpA 0.39 OKGIIK_06755 rnr ribonuclease R low > 52

Not shown: 1 genomes with orthologs for PP_4546 only; 24 genomes with orthologs for PP_4880 only