Conservation of cofitness between PP_0246 and PP_4722 in Pseudomonas putida KT2440

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0246 two-component system DNA-binding response transcriptional dual regulator 1.0 PP_4722 Transcription elongation factor GreA 0.28 9
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_1772 Two-component system response regulator OmpR 0.80 Pf1N1B4_1171 Transcription elongation factor GreA — —
Pseudomonas simiae WCS417 0.92 PS417_01170 chemotaxis protein CheY 0.79 PS417_24035 transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_11745 chemotaxis protein CheY 0.80 AO353_05625 transcription elongation factor GreA — —
Pseudomonas sp. RS175 0.92 PFR28_04868 Transcriptional regulatory protein OmpR 0.85 PFR28_00078 Transcription elongation factor GreA — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_427 Two-component system response regulator OmpR 0.79 PfGW456L13_5098 Transcription elongation factor GreA — —
Pseudomonas fluorescens SBW25 0.92 PFLU_RS01280 two-component system response regulator OmpR 0.80 PFLU_RS25875 transcription elongation factor GreA — —
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS01280 two-component system response regulator OmpR 0.80 PFLU_RS25875 transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3905 Two-component system response regulator OmpR 0.89 Pf6N2E2_3363 Transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_10170 chemotaxis protein CheY 0.87 AO356_07475 transcription elongation factor GreA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0258 Two-component response regulator OmpR 0.82 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0258 Two-component response regulator OmpR 0.82 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas sp. S08-1 0.84 OH686_11095 Two-component system response regulator OmpR 0.81 OH686_17085 Transcription elongation factor GreA low > 80
Pseudomonas stutzeri RCH2 0.81 Psest_3995 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.77 Psest_0969 transcription elongation factor GreA low > 67
Shewanella loihica PV-4 0.69 Shew_3637 ompR osmolarity response regulator (RefSeq) 0.61 Shew_2837 transcription elongation factor GreA (RefSeq) low > 60
Shewanella sp. ANA-3 0.69 Shewana3_4017 ompR osmolarity response regulator (RefSeq) 0.61 Shewana3_1017 transcription elongation factor GreA (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_13695 two-component system response regulator OmpR 0.53 CSW01_03330 transcription elongation factor GreA low > 62
Shewanella oneidensis MR-1 0.69 SO4633 ompR transcriptional regulatory protein OmpR (NCBI ptt file) 0.60 SO1191 greA transcription elongation factor GreA (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.68 Sama_3510 ompR osmolarity response regulator (RefSeq) 0.59 Sama_0951 GreA/GreB family elongation factor (RefSeq) low > 62
Serratia liquefaciens MT49 0.67 IAI46_23790 two-component system response regulator OmpR 0.56 IAI46_01880 transcription elongation factor GreA low > 86
Rahnella sp. WP5 0.67 EX31_RS04800 two-component system response regulator OmpR 0.56 EX31_RS08595 transcription elongation factor GreA low > 89
Alteromonas macleodii MIT1002 0.67 MIT1002_03968 Transcriptional regulatory protein OmpR 0.60 MIT1002_01468 Transcript cleavage factor GreA 0.95 13
Dickeya dadantii 3937 0.67 DDA3937_RS19620 two-component system response regulator OmpR 0.57 DDA3937_RS03015 transcription elongation factor GreA — —
Erwinia tracheiphila SCR3 0.67 LU632_RS22940 ompR two-component system response regulator OmpR 0.54 LU632_RS21165 greA transcription elongation factor GreA low > 74
Pantoea sp. MT58 0.67 IAI47_01820 two-component system response regulator OmpR 0.58 IAI47_17080 transcription elongation factor GreA low > 76
Dickeya dianthicola 67-19 0.67 HGI48_RS19750 two-component system response regulator OmpR 0.57 HGI48_RS03185 transcription elongation factor GreA low > 71
Escherichia coli ECOR38 0.67 HEPCGN_15845 ompR_G63V two-component system response regulator OmpR 0.60 HEPCGN_16920 greA transcription elongation factor GreA — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS01700 two-component system response regulator OmpR 0.57 HER17_RS18330 transcription elongation factor GreA — —
Escherichia coli ECRC102 0.67 NIAGMN_14805 ompR_G63V two-component system response regulator OmpR 0.60 NIAGMN_15805 greA transcription elongation factor GreA — —
Escherichia fergusonii Becca 0.67 EFB2_00423 Transcriptional regulatory protein OmpR 0.60 EFB2_00642 Transcription elongation factor GreA low > 86
Escherichia coli BW25113 0.67 b3405 ompR osmolarity response regulator (NCBI) 0.60 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) low > 76
Dickeya dianthicola ME23 0.67 DZA65_RS20840 two-component system response regulator OmpR 0.57 DZA65_RS03180 transcription elongation factor GreA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00298 Transcriptional regulatory protein OmpR 0.60 OHPLBJKB_00519 Transcription elongation factor GreA low > 73
Klebsiella michiganensis M5al 0.67 BWI76_RS26665 DNA-binding response regulator 0.59 BWI76_RS25160 transcription elongation factor GreA low > 92
Escherichia coli ECOR27 0.67 NOLOHH_08825 ompR_G63V two-component system response regulator OmpR 0.60 NOLOHH_09845 greA transcription elongation factor GreA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF613 Two-component system response regulator OmpR 0.61 GFF2922 Transcription elongation factor GreA low > 78
Escherichia coli ECRC101 0.67 OKFHMN_17035 ompR_G63V two-component system response regulator OmpR 0.60 OKFHMN_18045 greA transcription elongation factor GreA — —
Escherichia coli ECRC62 0.67 BNILDI_02695 ompR_G63V two-component system response regulator OmpR 0.60 BNILDI_01690 greA transcription elongation factor GreA — —
Enterobacter asburiae PDN3 0.67 EX28DRAFT_4138 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.59 EX28DRAFT_3232 transcription elongation factor GreA low > 76
Escherichia coli Nissle 1917 0.67 ECOLIN_RS19455 two-component system response regulator OmpR 0.60 ECOLIN_RS18320 transcription elongation factor GreA — —
Escherichia coli ECRC99 0.67 KEDOAH_11105 ompR_G63V two-component system response regulator OmpR 0.60 KEDOAH_10105 greA transcription elongation factor GreA — —
Escherichia coli ECRC98 0.67 JDDGAC_20665 ompR_G63V two-component system response regulator OmpR 0.60 JDDGAC_21670 greA transcription elongation factor GreA — —
Escherichia coli ECRC101 0.67 MCAODC_07565 ompR_G63V two-component system response regulator OmpR 0.60 MCAODC_08565 greA transcription elongation factor GreA — —
Enterobacter sp. TBS_079 0.67 MPMX20_04292 Transcriptional regulatory protein OmpR 0.59 MPMX20_04085 Transcription elongation factor GreA low > 85
Escherichia coli BL21 0.67 ECD_03257 response regulator in two-component regulatory system with EnvZ 0.60 ECD_03046 transcript cleavage factor low > 60
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_0684 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.58 B158DRAFT_0617 transcription elongation factor GreA low > 40
Acinetobacter radioresistens SK82 0.65 MPMX26_02838 Transcriptional regulatory protein OmpR 0.56 MPMX26_00765 Transcription elongation factor GreA low > 36
Variovorax sp. OAS795 0.59 ABID97_RS17265 two-component system response regulator OmpR 0.45 ABID97_RS17070 transcription elongation factor GreA low > 91
Variovorax sp. SCN45 0.59 GFF408 Two-component system response regulator OmpR 0.45 GFF374 Transcription elongation factor GreA low > 127
Acidovorax sp. GW101-3H11 0.58 Ac3H11_343 Two-component system response regulator OmpR 0.49 Ac3H11_437 Transcription elongation factor GreA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF4930 Two-component system response regulator OmpR 0.47 GFF4897 Transcription elongation factor GreA low > 90
Ralstonia solanacearum UW163 0.55 UW163_RS14725 two-component system response regulator OmpR 0.46 UW163_RS15495 transcription elongation factor GreA — —
Ralstonia solanacearum PSI07 0.55 RPSI07_RS16070 two-component system response regulator OmpR 0.47 RPSI07_RS15260 transcription elongation factor GreA low > 81
Ralstonia solanacearum GMI1000 0.55 RS_RS08305 two-component system response regulator OmpR 0.46 RS_RS07635 transcription elongation factor GreA — —
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS13210 two-component system response regulator OmpR 0.48 ABZR87_RS14135 transcription elongation factor GreA low > 80
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS01415 two-component system response regulator OmpR 0.46 RALBFv3_RS02185 transcription elongation factor GreA low > 76
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS07885 chemotaxis protein CheY 0.47 RR42_RS13505 transcription elongation factor GreA — —
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_00886 two component transcriptional regulator, winged helix family 0.46 H281DRAFT_04404 GreA/GreB family elongation factor low > 103
Paraburkholderia graminis OAS925 0.55 ABIE53_002101 two-component system phosphate regulon response regulator OmpR 0.46 ABIE53_003003 transcription elongation factor GreA low > 113
Castellaniella sp019104865 MT123 0.55 ABCV34_RS08585 two-component system response regulator OmpR 0.45 ABCV34_RS15540 transcription elongation factor GreA — —
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS09315 chemotaxis protein CheY 0.46 BPHYT_RS14185 transcription elongation factor GreA low > 109
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS22030 two-component system response regulator OmpR 0.47 QEN71_RS04785 transcription elongation factor GreA low > 153
Dechlorosoma suillum PS 0.54 Dsui_2401 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain 0.49 Dsui_3063 transcription elongation factor GreA low > 51
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS10760 chemotaxis protein CheY 0.48 HSERO_RS06930 transcription elongation factor GreA — —
Agrobacterium fabrum C58 0.35 Atu2206 two component response regulator 0.45 Atu2182 transcription elongation facto — —
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_03026 two-component response regulator petR 0.46 CCNA_02941 transcription elongation factor greA low > 67
Caulobacter crescentus NA1000 0.34 CCNA_03026 two-component response regulator petR 0.46 CCNA_02941 transcription elongation factor greA low > 66
Phaeobacter inhibens DSM 17395 0.33 PGA1_c34130 protein PetR 0.47 PGA1_c03290 transcription elongation factor GreA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS09825 response regulator transcription factor 0.48 A4249_RS00695 transcription elongation factor GreA — —
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS15940 DNA-binding response regulator 0.35 CA265_RS23190 transcription elongation factor GreA — —

Not shown: 0 genomes with orthologs for PP_0246 only; 27 genomes with orthologs for PP_4722 only