Conservation of cofitness between PP_2160 and PP_4546 in Pseudomonas putida KT2440

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 1.0 PP_4546 ATP-dependent helicase HrpA 0.39 7
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.85 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) low > 87
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.85 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) low > 87
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_1907 GTP cyclohydrolase I 0.85 Psyr_3831 ATP-dependent helicase HrpA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_1907 GTP cyclohydrolase I 0.85 Psyr_3831 ATP-dependent helicase HrpA — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.85 AO353_18225 ATP-dependent RNA helicase HrpA low > 101
Pseudomonas fluorescens SBW25 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA low > 109
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA low > 109
Pseudomonas simiae WCS417 0.81 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.85 PS417_20575 ATP-dependent helicase HrpA low > 88
Pseudomonas sp. RS175 0.81 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.85 PFR28_00739 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.85 AO356_04280 ATP-dependent RNA helicase HrpA low > 104
Pseudomonas fluorescens FW300-N2E2 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.85 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) low > 103
Pseudomonas stutzeri RCH2 0.78 Psest_2714 7-cyano-7-deazaguanine reductase 0.78 Psest_1339 ATP-dependent helicase HrpA low > 67
Pseudomonas sp. S08-1 0.75 OH686_22700 queuine synthase 0.80 OH686_05730 RNA helicase HrpA low > 80
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.35 OKGIIK_02155 hrpA ATP-dependent RNA helicase HrpA low > 52
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.36 LRK54_RS12715 ATP-dependent RNA helicase HrpA low > 59
Rhodanobacter denitrificans MT42 0.53 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.36 LRK55_RS12420 ATP-dependent RNA helicase HrpA low > 63
Dechlorosoma suillum PS 0.53 Dsui_0505 7-cyano-7-deazaguanine reductase 0.41 Dsui_1373 ATP-dependent helicase HrpA low > 51
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.39 ABZR86_RS19720 ATP-dependent RNA helicase HrpA low > 74
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 CSW01_06950 ATP-dependent RNA helicase HrpA low > 62
Ralstonia solanacearum PSI07 0.50 RPSI07_RS21815 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.41 RPSI07_RS17865 ATP-dependent RNA helicase HrpA low > 81
Ralstonia solanacearum UW163 0.50 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.41 UW163_RS12950 ATP-dependent RNA helicase HrpA — —
Ralstonia solanacearum GMI1000 0.50 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.41 RS_RS06270 ATP-dependent RNA helicase HrpA low > 80
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.41 RALBFv3_RS15490 ATP-dependent RNA helicase HrpA low > 76
Serratia liquefaciens MT49 0.50 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.48 IAI46_13330 ATP-dependent RNA helicase HrpA low > 86
Shewanella loihica PV-4 0.49 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.48 Shew_1767 ATP-dependent helicase HrpA (RefSeq) low > 60
Rahnella sp. WP5 0.49 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.46 EX31_RS06495 ATP-dependent RNA helicase HrpA low > 89
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.42 RR42_RS13030 ATP-dependent helicase low > 128
Escherichia coli ECRC98 0.49 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli ECRC99 0.49 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli ECRC102 0.49 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli ECRC101 0.49 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli ECRC101 0.49 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli Nissle 1917 0.49 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA — —
Escherichia fergusonii Becca 0.49 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.47 EFB2_02565 hypothetical protein low > 86
Escherichia coli ECOR38 0.49 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA low > 85
Escherichia coli ECOR27 0.49 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli ECRC62 0.49 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA — —
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.41 ABZR87_RS11020 ATP-dependent RNA helicase HrpA low > 80
Escherichia coli BL21 0.49 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) 0.47 ECD_01368 putative ATP-dependent helicase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.47 OHPLBJKB_02301 hypothetical protein low > 73
Escherichia coli BW25113 0.48 b2794 yqcD hypothetical protein (NCBI) 0.47 b1413 hrpA ATP-dependent helicase (RefSeq) low > 76
Shewanella oneidensis MR-1 0.48 SO1608 conserved hypothetical protein (NCBI ptt file) 0.48 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase 0.47 EX28DRAFT_1357 RNA helicase HrpA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) low > 78
Enterobacter sp. TBS_079 0.48 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.47 MPMX20_02189 hypothetical protein low > 85
Shewanella sp. ANA-3 0.48 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.48 Shewana3_1897 ATP-dependent helicase HrpA (RefSeq) low > 73
Pantoea sp. MT58 0.48 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA low > 76
Erwinia tracheiphila SCR3 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA low > 74
Klebsiella michiganensis M5al 0.47 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA low > 92
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.38 GFF4301 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. low > 90
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.37 QEN71_RS05625 ATP-dependent RNA helicase HrpA low > 153
Shewanella amazonensis SB2B 0.47 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.47 Sama_1619 ATP-dependent helicase HrpA (RefSeq) low > 62
Dickeya dadantii 3937 0.47 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.48 DDA3937_RS12270 ATP-dependent RNA helicase HrpA low > 74
Dickeya dianthicola 67-19 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 HGI48_RS12360 ATP-dependent RNA helicase HrpA low > 71
Paraburkholderia graminis OAS925 0.46 ABIE53_000759 7-cyano-7-deazaguanine reductase 0.40 ABIE53_002813 ATP-dependent helicase HrpA low > 113
Dickeya dianthicola ME23 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 DZA65_RS12800 ATP-dependent RNA helicase HrpA low > 75
Pectobacterium carotovorum WPP14 0.46 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA low > 75
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS19515 7-cyano-7-deazaguanine reductase 0.39 HSERO_RS17315 ATP-dependent helicase low > 78
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_2159 7-cyano-7-deazaguanine reductase 0.39 B158DRAFT_1779 ATP-dependent helicase HrpA low > 40
Acidovorax sp. GW101-3H11 0.45 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.38 Ac3H11_896 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. low > 79
Variovorax sp. SCN45 0.45 GFF6017 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) 0.38 GFF247 ATP-dependent helicase HrpA low > 127
Lysobacter sp. OAE881 0.44 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.37 ABIE51_RS05155 ATP-dependent RNA helicase HrpA low > 62
Alteromonas macleodii MIT1002 0.44 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.45 MIT1002_01685 ATP-dependent RNA helicase HrpB low > 70
Variovorax sp. OAS795 0.43 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.39 ABID97_RS16615 ATP-dependent RNA helicase HrpA low > 91
Marinobacter adhaerens HP15 0.42 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.48 HP15_1863 RNA helicase, ATP-dependent DEAH box, HrpA type low > 73
Castellaniella sp019104865 MT123 0.42 ABCV34_RS06920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.40 ABCV34_RS02420 ATP-dependent RNA helicase HrpA low > 48
Acinetobacter radioresistens SK82 0.38 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.37 MPMX26_02008 hypothetical protein low > 36

Not shown: 3 genomes with orthologs for PP_2160 only; 1 genomes with orthologs for PP_4546 only