Conservation of cofitness between PP_5107 and PP_2160 in Pseudomonas putida KT2440

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5107 Monofunctional biosynthetic peptidoglycan transglycosylase 1.0 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.22 11
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_997 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) 0.82 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_4743 Glycosyl transferase, family 51 0.82 Psyr_1907 GTP cyclohydrolase I — —
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_4743 Glycosyl transferase, family 51 0.82 Psyr_1907 GTP cyclohydrolase I low > 86
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_08230 monofunctional biosynthetic peptidoglycan transglycosylase 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 101
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_2328 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) 0.82 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 87
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_13360 monofunctional biosynthetic peptidoglycan transglycosylase 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_4587 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 103
Pseudomonas sp. RS175 0.71 PFR28_04255 Biosynthetic peptidoglycan transglycosylase 0.81 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 88
Pseudomonas sp. S08-1 0.69 OH686_14270 monofunctional biosynthetic peptidoglycan transglycosylase 0.75 OH686_22700 queuine synthase low > 80
Pseudomonas simiae WCS417 0.69 PS417_26790 peptidoglycan transglycosylase 0.81 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 88
Pseudomonas fluorescens SBW25 0.69 PFLU_RS28435 monofunctional biosynthetic peptidoglycan transglycosylase 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS28435 monofunctional biosynthetic peptidoglycan transglycosylase 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas stutzeri RCH2 0.66 Psest_0264 monofunctional biosynthetic peptidoglycan transglycosylase 0.78 Psest_2714 7-cyano-7-deazaguanine reductase low > 67
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1585.1 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) 0.44 Xcc-8004.4789.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 74
Pectobacterium carotovorum WPP14 0.49 HER17_RS19890 monofunctional biosynthetic peptidoglycan transglycosylase 0.46 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF2952 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) 0.48 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 78
Dickeya dadantii 3937 0.48 DDA3937_RS01685 monofunctional biosynthetic peptidoglycan transglycosylase 0.47 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS05455 monofunctional biosynthetic peptidoglycan transglycosylase 0.53 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 59
Rhodanobacter denitrificans MT42 0.48 LRK55_RS05230 monofunctional biosynthetic peptidoglycan transglycosylase 0.53 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 63
Rhodanobacter sp. FW510-T8 0.48 OKGIIK_01350 Biosynthetic peptidoglycan transglycosylase 0.54 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 52
Escherichia coli ECOR27 0.48 NOLOHH_09710 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.49 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 57
Escherichia coli ECRC62 0.48 BNILDI_01825 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.49 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli BL21 0.48 ECD_03073 biosynthetic peptidoglycan transglycosylase 0.49 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) low > 60
Escherichia coli BW25113 0.48 b3208 mtgA monofunctional biosynthetic peptidoglycan transglycosylase (NCBI) 0.48 b2794 yqcD hypothetical protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.48 ECOLIN_RS18455 monofunctional biosynthetic peptidoglycan transglycosylase 0.49 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 52
Escherichia fergusonii Becca 0.48 EFB2_00615 Biosynthetic peptidoglycan transglycosylase 0.49 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_00492 Biosynthetic peptidoglycan transglycosylase 0.49 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 73
Enterobacter asburiae PDN3 0.48 EX28DRAFT_3261 monofunctional biosynthetic peptidoglycan transglycosylase 0.48 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase low > 76
Dickeya dianthicola 67-19 0.47 HGI48_RS01580 monofunctional biosynthetic peptidoglycan transglycosylase 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 71
Dickeya dianthicola ME23 0.47 DZA65_RS01655 monofunctional biosynthetic peptidoglycan transglycosylase 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Rahnella sp. WP5 0.47 EX31_RS12525 monofunctional biosynthetic peptidoglycan transglycosylase 0.49 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 89
Escherichia coli ECOR38 0.47 HEPCGN_16785 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.49 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.57 61
Serratia liquefaciens MT49 0.47 IAI46_22325 monofunctional biosynthetic peptidoglycan transglycosylase 0.50 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 86
Escherichia coli ECRC102 0.46 NIAGMN_15670 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.49 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC101 0.46 OKFHMN_17910 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.49 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC101 0.46 MCAODC_08430 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.49 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Shewanella sp. ANA-3 0.46 Shewana3_0858 monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq) 0.48 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 73
Escherichia coli ECRC98 0.46 JDDGAC_21535 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.49 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC99 0.46 KEDOAH_10240 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.49 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Shewanella oneidensis MR-1 0.46 SO3735 mtgA monofunctional biosynthetic peptidoglycan transglycosylase (NCBI ptt file) 0.48 SO1608 conserved hypothetical protein (NCBI ptt file) low > 76
Enterobacter sp. TBS_079 0.46 MPMX20_04113 Biosynthetic peptidoglycan transglycosylase 0.48 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 85
Lysobacter sp. OAE881 0.46 ABIE51_RS16250 monofunctional biosynthetic peptidoglycan transglycosylase 0.44 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 62
Erwinia tracheiphila SCR3 0.45 LU632_RS21305 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS18920 monofunctional biosynthetic peptidoglycan transglycosylase 0.52 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Klebsiella michiganensis M5al 0.44 BWI76_RS25290 monofunctional biosynthetic peptidoglycan transglycosylase 0.47 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 92
Pantoea sp. MT58 0.40 IAI47_17210 monofunctional biosynthetic peptidoglycan transglycosylase 0.48 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 76
Marinobacter adhaerens HP15 0.39 HP15_2780 monofunctional biosynthetic peptidoglycan transglycosylase 0.42 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 73
Shewanella amazonensis SB2B 0.38 Sama_0740 monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq) 0.47 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 62
Herbaspirillum seropedicae SmR1 0.33 HSERO_RS01995 peptidoglycan transglycosylase 0.45 HSERO_RS19515 7-cyano-7-deazaguanine reductase low > 78
Dechlorosoma suillum PS 0.33 Dsui_0442 monofunctional biosynthetic peptidoglycan transglycosylase 0.53 Dsui_0505 7-cyano-7-deazaguanine reductase low > 51
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS27125 monofunctional biosynthetic peptidoglycan transglycosylase 0.47 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 153
Acinetobacter radioresistens SK82 0.32 MPMX26_02336 Biosynthetic peptidoglycan transglycosylase 0.38 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 36
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS16970 monofunctional biosynthetic peptidoglycan transglycosylase 0.46 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 109
Castellaniella sp019104865 MT123 0.31 ABCV34_RS10705 monofunctional biosynthetic peptidoglycan transglycosylase 0.42 ABCV34_RS06920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 48
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_06292 monofunctional biosynthetic peptidoglycan transglycosylase 0.46 H281DRAFT_01889 7-cyano-7-deazaguanine reductase low > 103
Paraburkholderia graminis OAS925 0.30 ABIE53_003559 monofunctional biosynthetic peptidoglycan transglycosylase 0.46 ABIE53_000759 7-cyano-7-deazaguanine reductase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF575 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) 0.47 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 90
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS05940 monofunctional biosynthetic peptidoglycan transglycosylase 0.50 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 76
Ralstonia solanacearum UW163 0.27 UW163_RS07685 monofunctional biosynthetic peptidoglycan transglycosylase 0.50 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Ralstonia solanacearum GMI1000 0.27 RS_RS13885 monofunctional biosynthetic peptidoglycan transglycosylase 0.50 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS01600 monofunctional biosynthetic peptidoglycan transglycosylase 0.49 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Cupriavidus basilensis FW507-4G11 0.26 RR42_RS17640 peptidoglycan transglycosylase 0.49 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 128

Not shown: 20 genomes with orthologs for PP_5107 only; 8 genomes with orthologs for PP_2160 only