Conservation of cofitness between PP_5028 and PP_1994 in Pseudomonas putida KT2440

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5028 proline iminopeptidase 1.0 PP_1994 tRNA pseudouridine (38-40)synthase 0.36 17
Pseudomonas sp. RS175 0.83 PFR28_04976 Proline iminopeptidase 0.78 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_12300 proline iminopeptidase 0.77 AO353_20660 pseudouridine synthase 0.27 62
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_3794 Proline iminopeptidase (EC 3.4.11.5) 0.78 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_09575 proline iminopeptidase 0.76 AO356_21435 pseudouridine synthase low > 104
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_313 Proline iminopeptidase (EC 3.4.11.5) 0.79 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_1575 Proline iminopeptidase (EC 3.4.11.5) 0.78 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas sp. S08-1 0.79 OH686_10205 prolyl aminopeptidase 0.71 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_0375 prolyl aminopeptidase, Serine peptidase, MEROPS family S33 0.78 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_0375 prolyl aminopeptidase, Serine peptidase, MEROPS family S33 0.78 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas simiae WCS417 0.79 PS417_01780 proline iminopeptidase 0.76 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens SBW25 0.78 PFLU_RS01825 prolyl aminopeptidase 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS01825 prolyl aminopeptidase 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas stutzeri RCH2 0.76 Psest_3951 proline iminopeptidase, Neisseria-type subfamily 0.70 Psest_2585 pseudouridylate synthase I low > 67
Marinobacter adhaerens HP15 0.58 HP15_430 peptidase S33, proline iminopeptidase 1 0.50 HP15_1829 tRNA pseudouridine synthase A low > 73
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.4219.1 Proline iminopeptidase (EC 3.4.11.5) 0.40 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS03175 prolyl aminopeptidase 0.40 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Rhodanobacter denitrificans MT42 0.52 LRK55_RS02925 prolyl aminopeptidase 0.40 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Lysobacter sp. OAE881 0.51 ABIE51_RS05500 prolyl aminopeptidase 0.41 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS09625 prolyl aminopeptidase 0.39 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_10045 pip prolyl aminopeptidase 0.39 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Rhizobium sp. OAE497 0.49 ABIE40_RS06225 prolyl aminopeptidase 0.28 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS06695 prolyl aminopeptidase 0.26 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA low > 48
Rahnella sp. WP5 0.48 EX31_RS24755 prolyl aminopeptidase 0.53 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_01285 proline iminopeptidase 0.28 CCNA_00280 tRNA pseudouridine synthase A low > 67
Caulobacter crescentus NA1000 0.48 CCNA_01285 proline iminopeptidase 0.28 CCNA_00280 tRNA pseudouridine synthase A low > 66
Sinorhizobium meliloti 1021 0.48 SMc02547 proline iminopeptidase 0.30 SMc01099 tRNA pseudouridine synthase A low > 103
Ralstonia solanacearum PSI07 0.47 RPSI07_RS00655 prolyl aminopeptidase 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Agrobacterium fabrum C58 0.47 Atu1069 proline iminopeptidase 0.29 Atu0368 tRNA pseudouridine synthase I low > 89
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS15995 proline iminopeptidase 0.43 HSERO_RS16485 tRNA pseudouridine synthase A low > 78
Variovorax sp. SCN45 0.47 GFF2633 Proline iminopeptidase (EC 3.4.11.5) 0.40 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Castellaniella sp019104865 MT123 0.47 ABCV34_RS09000 prolyl aminopeptidase 0.41 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA low > 48
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS16705 proline iminopeptidase 0.38 RR42_RS14370 tRNA pseudouridine synthase A — —
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_2484 proline iminopeptidase, Neisseria-type subfamily 0.24 Ga0059261_0647 tRNA pseudouridine(38-40) synthase low > 68
Ralstonia solanacearum IBSBF1503 0.47 RALBFv3_RS22505 prolyl aminopeptidase 0.41 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum UW163 0.47 UW163_RS23050 prolyl aminopeptidase 0.41 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Serratia liquefaciens MT49 0.47 IAI46_09990 prolyl aminopeptidase 0.53 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS16395 prolyl aminopeptidase 0.41 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA low > 80
Ralstonia solanacearum GMI1000 0.46 RS_RS18090 prolyl aminopeptidase 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA low > 80
Azospirillum brasilense Sp245 0.45 AZOBR_RS00910 proline iminopeptidase 0.31 AZOBR_RS03570 tRNA pseudouridine synthase A — —
Azospirillum sp. SherDot2 0.45 MPMX19_02763 Proline iminopeptidase 0.31 MPMX19_02005 tRNA pseudouridine synthase A — —
Dinoroseobacter shibae DFL-12 0.44 Dshi_3551 proline iminopeptidase (RefSeq) 0.26 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.44 PGA1_c34670 proline iminopeptidase Pip 0.28 PGA1_c05650 tRNA pseudouridine synthase A low > 62
Rhodospirillum rubrum S1H 0.40 Rru_A0084 Peptidase S33, proline iminopeptidase 1 (NCBI) 0.31 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.40 AMB_RS03080 prolyl aminopeptidase 0.30 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA low > 64
Alteromonas macleodii MIT1002 0.39 MIT1002_03674 Proline iminopeptidase 0.50 MIT1002_02529 tRNA pseudouridine synthase A 0.82 38
Rhodopseudomonas palustris CGA009 0.34 TX73_018815 prolyl aminopeptidase 0.25 TX73_003225 tRNA pseudouridine(38-40) synthase TruA low > 86
Fusobacterium nucleatum SB010 0.34 HUW76_04605 prolyl aminopeptidase 0.20 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA low > 35
Variovorax sp. OAS795 0.29 ABID97_RS12710 alpha/beta fold hydrolase 0.39 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA — —
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_01329 prolyl aminopeptidase (EC:3.4.11.5). Serine peptidase. MEROPS family S33 0.46 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Paraburkholderia graminis OAS925 0.21 ABIE53_005484 proline iminopeptidase 0.45 ABIE53_004807 tRNA pseudouridine38-40 synthase — —
Shewanella loihica PV-4 0.19 Shew_3544 alpha/beta hydrolase fold (RefSeq) 0.52 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Paraburkholderia sabiae LMG 24235 0.19 QEN71_RS30235 alpha/beta fold hydrolase 0.47 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.19 GFF5402 Proline iminopeptidase (EC 3.4.11.5) 0.42 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 90

Not shown: 1 genomes with orthologs for PP_5028 only; 47 genomes with orthologs for PP_1994 only